Wall clock time and date at job start Mon Mar 30 2020 23:48:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46498 * 1 3 3 C 1.46504 * 120.00013 * 2 1 4 4 C 1.50703 * 109.47029 * 274.99956 * 3 2 1 5 5 H 1.08006 * 120.00159 * 359.97438 * 4 3 2 6 6 C 1.37877 * 120.00120 * 180.02562 * 4 3 2 7 7 N 1.31514 * 120.00089 * 359.97438 * 6 4 3 8 8 Si 1.86798 * 119.99938 * 180.02562 * 6 4 3 9 9 H 1.48506 * 109.47297 * 269.99556 * 8 6 4 10 10 H 1.48503 * 109.47261 * 149.99737 * 8 6 4 11 11 H 1.48500 * 109.47454 * 29.99730 * 8 6 4 12 12 S 1.65598 * 120.00114 * 179.97438 * 2 1 3 13 13 O 1.42101 * 106.40072 * 23.54375 * 12 2 1 14 14 O 1.42107 * 106.40451 * 156.45777 * 12 2 1 15 15 N 1.65601 * 107.21981 * 270.00232 * 12 2 1 16 16 C 1.46493 * 120.00093 * 64.99654 * 15 12 2 17 17 H 1.09000 * 110.32859 * 25.78951 * 16 15 12 18 18 C 1.54491 * 110.36716 * 148.14654 * 16 15 12 19 19 C 1.54573 * 102.14667 * 103.49361 * 18 16 15 20 20 O 1.45833 * 104.44015 * 26.84761 * 19 18 16 21 21 C 1.34061 * 109.91162 * 329.39256 * 20 19 18 22 22 O 1.20820 * 125.09847 * 200.79690 * 21 20 19 23 23 H 1.08997 * 109.47090 * 89.99926 * 1 2 3 24 24 H 1.08999 * 109.47238 * 210.00236 * 1 2 3 25 25 H 1.08996 * 109.46898 * 330.00537 * 1 2 3 26 26 H 1.09003 * 109.46930 * 155.00221 * 3 2 1 27 27 H 1.08996 * 109.47301 * 34.99788 * 3 2 1 28 28 H 0.96998 * 119.99255 * 0.02562 * 7 6 4 29 29 H 0.97003 * 119.99350 * 245.00088 * 15 12 2 30 30 H 1.09004 * 110.86754 * 221.65317 * 18 16 15 31 31 H 1.08994 * 110.87106 * 345.32692 * 18 16 15 32 32 H 1.08995 * 110.43913 * 268.10739 * 19 18 16 33 33 H 1.08995 * 110.44359 * 145.58500 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1975 1.2688 0.0000 4 6 2.3414 1.7657 -1.4154 5 1 1.9289 1.1934 -2.2333 6 6 3.0006 2.9503 -1.6665 7 7 3.5034 3.6469 -0.6708 8 14 3.1784 3.5666 -3.4209 9 1 4.4331 3.0320 -4.0087 10 1 3.2245 5.0509 -3.4220 11 1 2.0190 3.1069 -4.2270 12 16 2.2930 -1.4341 0.0006 13 8 1.4114 -2.4067 -0.5434 14 8 3.5760 -1.1570 -0.5440 15 7 2.5381 -1.8580 1.5826 16 6 1.3947 -2.1767 2.4411 17 1 0.5568 -2.5302 1.8401 18 6 1.7907 -3.2374 3.4922 19 6 1.9455 -2.3849 4.7722 20 8 1.0630 -1.2438 4.5582 21 6 0.9885 -0.9635 3.2493 22 8 0.6473 0.0983 2.7846 23 1 -0.3633 0.0000 -1.0276 24 1 -0.3634 -0.8899 0.5139 25 1 -0.3633 0.8900 0.5137 26 1 3.1858 1.1177 0.4343 27 1 1.6502 2.0043 0.5894 28 1 3.4107 3.3270 0.2402 29 1 3.4388 -1.8951 1.9407 30 1 1.0005 -3.9786 3.6127 31 1 2.7343 -3.7140 3.2266 32 1 2.9773 -2.0522 4.8854 33 1 1.6292 -2.9517 5.6478 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001348524600.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 23:48:50 Heat of formation + Delta-G solvation = -148.676038 kcal Electronic energy + Delta-G solvation = -21059.851060 eV Core-core repulsion = 17634.137493 eV Total energy + Delta-G solvation = -3425.713567 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 278.081 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -41.17971 -37.56458 -36.78674 -35.62485 -35.46597 -35.32134 -32.54689 -31.15756 -27.47170 -27.31464 -24.77158 -22.89898 -22.38664 -21.40731 -19.50334 -17.75054 -17.72103 -17.07698 -16.71915 -16.62324 -16.30070 -15.45706 -14.92040 -14.51934 -14.07236 -13.81414 -13.63027 -13.20453 -13.06009 -12.54268 -12.37007 -12.19923 -12.02841 -11.68532 -11.61670 -11.42140 -11.23448 -11.20485 -11.02372 -10.86798 -10.57298 -10.43121 -10.05336 -9.46894 -9.26600 -8.32595 -7.87343 -6.33855 -4.04819 0.99865 1.90605 3.03223 3.29520 3.49314 3.52996 3.65211 3.68317 3.80903 4.02482 4.25529 4.43108 4.59030 4.78456 4.91011 5.05419 5.16529 5.32026 5.38499 5.52128 5.64997 6.14863 6.29838 6.47440 6.56034 6.77951 7.02481 7.27595 7.36512 7.51306 8.08274 8.50387 8.85549 9.64291 11.04246 Molecular weight = 278.08amu Principal moments of inertia in cm(-1) A = 0.027749 B = 0.006116 C = 0.005633 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1008.788683 B = 4576.789787 C = 4969.818828 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.120 3.880 2 N -0.979 5.979 3 C 0.254 3.746 4 C -0.607 4.607 5 H 0.054 0.946 6 C 0.020 3.980 7 N -0.911 5.911 8 Si 1.073 2.927 9 H -0.286 1.286 10 H -0.284 1.284 11 H -0.288 1.288 12 S 2.777 3.223 13 O -0.991 6.991 14 O -0.957 6.957 15 N -1.116 6.116 16 C 0.092 3.908 17 H 0.133 0.867 18 C -0.160 4.160 19 C 0.053 3.947 20 O -0.346 6.346 21 C 0.458 3.542 22 O -0.413 6.413 23 H 0.048 0.952 24 H 0.044 0.956 25 H 0.070 0.930 26 H 0.022 0.978 27 H 0.029 0.971 28 H 0.267 0.733 29 H 0.416 0.584 30 H 0.103 0.897 31 H 0.107 0.893 32 H 0.087 0.913 33 H 0.113 0.887 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.051 -15.126 11.762 19.585 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.027 4.027 2 N -0.822 5.822 3 C 0.131 3.869 4 C -0.646 4.646 5 H 0.073 0.927 6 C -0.184 4.184 7 N -0.548 5.548 8 Si 0.901 3.099 9 H -0.213 1.213 10 H -0.210 1.210 11 H -0.214 1.214 12 S 2.784 3.216 13 O -0.975 6.975 14 O -0.940 6.940 15 N -0.874 5.874 16 C -0.018 4.018 17 H 0.150 0.850 18 C -0.199 4.199 19 C -0.022 4.022 20 O -0.263 6.263 21 C 0.292 3.708 22 O -0.292 6.292 23 H 0.066 0.934 24 H 0.062 0.938 25 H 0.089 0.911 26 H 0.040 0.960 27 H 0.046 0.954 28 H 0.077 0.923 29 H 0.250 0.750 30 H 0.122 0.878 31 H 0.126 0.874 32 H 0.105 0.895 33 H 0.131 0.869 Dipole moment (debyes) X Y Z Total from point charges -3.627 -13.726 9.955 17.339 hybrid contribution -0.272 -1.184 1.466 1.904 sum -3.899 -14.910 11.421 19.182 Atomic orbital electron populations 1.21137 0.79575 1.01284 1.00684 1.57260 1.14429 1.22481 1.87984 1.19075 0.90184 0.79630 0.97998 1.22350 1.40084 1.09543 0.92661 0.92744 1.25811 0.93103 0.93592 1.05936 1.70777 1.43356 1.40206 1.00427 0.83491 0.76358 0.76085 0.73920 1.21307 1.20976 1.21433 1.02183 0.73589 0.73027 0.72761 1.93546 1.67443 1.60281 1.76200 1.93662 1.40599 1.84811 1.74964 1.56463 1.13054 1.86016 1.31909 1.21973 0.91892 0.93642 0.94340 0.84963 1.23252 1.05418 0.97677 0.93569 1.24161 0.94242 0.84525 0.99275 1.87066 1.62282 1.49509 1.27425 1.23734 0.75388 0.89387 0.82259 1.90850 1.40307 1.25833 1.72166 0.93360 0.93769 0.91078 0.96037 0.95354 0.92269 0.75027 0.87814 0.87424 0.89487 0.86863 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.12 2.27 8.74 59.85 0.52 2.79 16 2 N -0.98 -21.31 2.68 -123.05 -0.33 -21.64 16 3 C 0.25 6.64 4.43 -5.19 -0.02 6.62 16 4 C -0.61 -17.80 9.38 -34.44 -0.32 -18.13 16 5 H 0.05 1.61 7.81 -52.48 -0.41 1.20 16 6 C 0.02 0.58 5.46 -17.82 -0.10 0.49 16 7 N -0.91 -28.21 13.65 55.43 0.76 -27.46 16 8 Si 1.07 26.32 29.90 -169.99 -5.08 21.24 16 9 H -0.29 -6.84 7.11 56.52 0.40 -6.44 16 10 H -0.28 -6.82 7.11 56.52 0.40 -6.42 16 11 H -0.29 -6.72 7.11 56.52 0.40 -6.32 16 12 S 2.78 54.37 6.04 -107.50 -0.65 53.72 16 13 O -0.99 -19.99 16.58 -57.17 -0.95 -20.93 16 14 O -0.96 -22.60 17.11 -57.17 -0.98 -23.58 16 15 N -1.12 -15.22 5.55 -4.95 -0.03 -15.24 16 16 C 0.09 1.03 3.66 -67.99 -0.25 0.78 16 17 H 0.13 1.43 7.20 -51.93 -0.37 1.06 16 18 C -0.16 -0.99 6.89 -25.12 -0.17 -1.16 16 19 C 0.05 0.33 7.90 37.98 0.30 0.63 16 20 O -0.35 -3.99 11.05 -38.47 -0.43 -4.42 16 21 C 0.46 6.31 8.21 36.32 0.30 6.61 16 22 O -0.41 -7.41 15.57 -18.41 -0.29 -7.69 16 23 H 0.05 0.91 8.14 -51.93 -0.42 0.48 16 24 H 0.04 0.70 7.39 -51.93 -0.38 0.31 16 25 H 0.07 1.35 7.77 -51.93 -0.40 0.94 16 26 H 0.02 0.59 7.48 -51.93 -0.39 0.20 16 27 H 0.03 0.77 7.83 -51.93 -0.41 0.36 16 28 H 0.27 8.19 7.22 -40.82 -0.29 7.89 16 29 H 0.42 4.62 8.79 -34.47 -0.30 4.32 16 30 H 0.10 0.43 8.14 -51.93 -0.42 0.00 16 31 H 0.11 0.51 7.97 -51.93 -0.41 0.09 16 32 H 0.09 0.46 8.14 -51.93 -0.42 0.04 16 33 H 0.11 0.39 8.14 -51.93 -0.42 -0.04 16 LS Contribution 296.15 15.07 4.46 4.46 Total: -1.00 -38.10 296.15 -7.12 -45.22 By element: Atomic # 1 Polarization: 1.55 SS G_CDS: -3.86 Total: -2.31 kcal Atomic # 6 Polarization: -1.62 SS G_CDS: 0.26 Total: -1.37 kcal Atomic # 7 Polarization: -64.74 SS G_CDS: 0.40 Total: -64.35 kcal Atomic # 8 Polarization: -53.98 SS G_CDS: -2.64 Total: -56.62 kcal Atomic # 14 Polarization: 26.32 SS G_CDS: -5.08 Total: 21.24 kcal Atomic # 16 Polarization: 54.37 SS G_CDS: -0.65 Total: 53.72 kcal Total LS contribution 4.46 Total: 4.46 kcal Total: -38.10 -7.12 -45.22 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001348524600.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -103.456 kcal (2) G-P(sol) polarization free energy of solvation -38.104 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -141.560 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.116 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.220 kcal (6) G-S(sol) free energy of system = (1) + (5) -148.676 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds