Wall clock time and date at job start Mon Mar 30 2020 23:48:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46498 * 1 3 3 C 1.46504 * 120.00013 * 2 1 4 4 C 1.50703 * 109.47029 * 274.99956 * 3 2 1 5 5 H 1.08006 * 120.00159 * 359.97438 * 4 3 2 6 6 C 1.37877 * 120.00120 * 180.02562 * 4 3 2 7 7 N 1.31514 * 120.00089 * 359.97438 * 6 4 3 8 8 Si 1.86798 * 119.99938 * 180.02562 * 6 4 3 9 9 H 1.48506 * 109.47297 * 269.99556 * 8 6 4 10 10 H 1.48503 * 109.47261 * 149.99737 * 8 6 4 11 11 H 1.48500 * 109.47454 * 29.99730 * 8 6 4 12 12 S 1.65598 * 120.00114 * 179.97438 * 2 1 3 13 13 O 1.42101 * 106.40072 * 23.54375 * 12 2 1 14 14 O 1.42107 * 106.40451 * 156.45777 * 12 2 1 15 15 N 1.65601 * 107.21981 * 270.00232 * 12 2 1 16 16 C 1.46493 * 120.00093 * 64.99654 * 15 12 2 17 17 H 1.09000 * 110.32859 * 25.78951 * 16 15 12 18 18 C 1.54491 * 110.36716 * 148.14654 * 16 15 12 19 19 C 1.54573 * 102.14667 * 103.49361 * 18 16 15 20 20 O 1.45833 * 104.44015 * 26.84761 * 19 18 16 21 21 C 1.34061 * 109.91162 * 329.39256 * 20 19 18 22 22 O 1.20820 * 125.09847 * 200.79690 * 21 20 19 23 23 H 1.08997 * 109.47090 * 89.99926 * 1 2 3 24 24 H 1.08999 * 109.47238 * 210.00236 * 1 2 3 25 25 H 1.08996 * 109.46898 * 330.00537 * 1 2 3 26 26 H 1.09003 * 109.46930 * 155.00221 * 3 2 1 27 27 H 1.08996 * 109.47301 * 34.99788 * 3 2 1 28 28 H 0.96998 * 119.99255 * 0.02562 * 7 6 4 29 29 H 0.97003 * 119.99350 * 245.00088 * 15 12 2 30 30 H 1.09004 * 110.86754 * 221.65317 * 18 16 15 31 31 H 1.08994 * 110.87106 * 345.32692 * 18 16 15 32 32 H 1.08995 * 110.43913 * 268.10739 * 19 18 16 33 33 H 1.08995 * 110.44359 * 145.58500 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1975 1.2688 0.0000 4 6 2.3414 1.7657 -1.4154 5 1 1.9289 1.1934 -2.2333 6 6 3.0006 2.9503 -1.6665 7 7 3.5034 3.6469 -0.6708 8 14 3.1784 3.5666 -3.4209 9 1 4.4331 3.0320 -4.0087 10 1 3.2245 5.0509 -3.4220 11 1 2.0190 3.1069 -4.2270 12 16 2.2930 -1.4341 0.0006 13 8 1.4114 -2.4067 -0.5434 14 8 3.5760 -1.1570 -0.5440 15 7 2.5381 -1.8580 1.5826 16 6 1.3947 -2.1767 2.4411 17 1 0.5568 -2.5302 1.8401 18 6 1.7907 -3.2374 3.4922 19 6 1.9455 -2.3849 4.7722 20 8 1.0630 -1.2438 4.5582 21 6 0.9885 -0.9635 3.2493 22 8 0.6473 0.0983 2.7846 23 1 -0.3633 0.0000 -1.0276 24 1 -0.3634 -0.8899 0.5139 25 1 -0.3633 0.8900 0.5137 26 1 3.1858 1.1177 0.4343 27 1 1.6502 2.0043 0.5894 28 1 3.4107 3.3270 0.2402 29 1 3.4388 -1.8951 1.9407 30 1 1.0005 -3.9786 3.6127 31 1 2.7343 -3.7140 3.2266 32 1 2.9773 -2.0522 4.8854 33 1 1.6292 -2.9517 5.6478 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001348524600.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 23:48:50 Heat of formation + Delta-G solvation = -179.952720 kcal Electronic energy + Delta-G solvation = -21061.207319 eV Core-core repulsion = 17634.137493 eV Total energy + Delta-G solvation = -3427.069826 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 278.081 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -42.07824 -38.63426 -38.44630 -37.42218 -37.01568 -36.55578 -34.69923 -31.94936 -29.37006 -28.24898 -26.65183 -24.48394 -23.52524 -22.37250 -20.90977 -19.50938 -18.84128 -18.51544 -18.37158 -17.93074 -17.29746 -16.91510 -16.16532 -15.74890 -15.66867 -15.23221 -14.94846 -14.85433 -14.29019 -14.06592 -13.99180 -13.44333 -13.32988 -13.24007 -13.16789 -12.97640 -12.83636 -12.55641 -12.44380 -12.40485 -12.16924 -11.92677 -11.53052 -11.28564 -10.59834 -10.55182 -9.78443 -8.68594 -6.41999 -0.53119 0.84529 1.51039 1.60483 1.78268 1.86371 2.24051 2.44252 2.55815 2.80520 3.11381 3.15463 3.28338 3.70125 3.83069 3.93819 4.09762 4.37667 4.56991 4.67141 4.69036 4.83663 4.90760 4.95206 4.97429 5.29013 5.55353 5.66927 5.84163 5.87596 6.18744 6.33999 6.49695 7.35649 8.68377 Molecular weight = 278.08amu Principal moments of inertia in cm(-1) A = 0.027749 B = 0.006116 C = 0.005633 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1008.788683 B = 4576.789787 C = 4969.818828 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.116 3.884 2 N -0.991 5.991 3 C 0.270 3.730 4 C -0.623 4.623 5 H 0.047 0.953 6 C -0.031 4.031 7 N -0.932 5.932 8 Si 1.117 2.883 9 H -0.275 1.275 10 H -0.276 1.276 11 H -0.270 1.270 12 S 2.796 3.204 13 O -0.996 6.996 14 O -1.002 7.002 15 N -1.099 6.099 16 C 0.083 3.917 17 H 0.139 0.861 18 C -0.145 4.145 19 C 0.044 3.956 20 O -0.361 6.361 21 C 0.456 3.544 22 O -0.468 6.468 23 H 0.045 0.955 24 H 0.076 0.924 25 H 0.063 0.937 26 H 0.006 0.994 27 H 0.011 0.989 28 H 0.256 0.744 29 H 0.430 0.570 30 H 0.135 0.865 31 H 0.130 0.870 32 H 0.097 0.903 33 H 0.150 0.850 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.210 -17.286 12.432 21.704 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.029 4.029 2 N -0.831 5.831 3 C 0.146 3.854 4 C -0.662 4.662 5 H 0.065 0.935 6 C -0.229 4.229 7 N -0.569 5.569 8 Si 0.938 3.062 9 H -0.201 1.201 10 H -0.201 1.201 11 H -0.195 1.195 12 S 2.804 3.196 13 O -0.979 6.979 14 O -0.986 6.986 15 N -0.863 5.863 16 C -0.027 4.027 17 H 0.157 0.843 18 C -0.183 4.183 19 C -0.029 4.029 20 O -0.277 6.277 21 C 0.293 3.707 22 O -0.351 6.351 23 H 0.064 0.936 24 H 0.094 0.906 25 H 0.082 0.918 26 H 0.024 0.976 27 H 0.029 0.971 28 H 0.065 0.935 29 H 0.267 0.733 30 H 0.153 0.847 31 H 0.148 0.852 32 H 0.115 0.885 33 H 0.168 0.832 Dipole moment (debyes) X Y Z Total from point charges -3.791 -15.933 10.659 19.541 hybrid contribution -0.252 -0.652 1.436 1.597 sum -4.043 -16.585 12.095 20.921 Atomic orbital electron populations 1.21256 0.78212 1.02613 1.00845 1.57218 1.15484 1.21577 1.88856 1.18574 0.89611 0.81222 0.96012 1.22709 1.39852 1.09742 0.93913 0.93475 1.27319 0.92393 0.94022 1.09211 1.70896 1.44799 1.40822 1.00352 0.82958 0.77419 0.76173 0.69685 1.20112 1.20067 1.19506 1.01390 0.72256 0.72289 0.73666 1.93535 1.67395 1.59749 1.77215 1.93597 1.42610 1.85321 1.77083 1.55856 1.14836 1.85126 1.30482 1.22342 0.91150 0.94172 0.94993 0.84321 1.23382 1.07615 0.96487 0.90856 1.24657 0.94198 0.83259 1.00754 1.87043 1.62922 1.51544 1.26172 1.24177 0.74028 0.89249 0.83259 1.90823 1.42800 1.28045 1.73389 0.93625 0.90582 0.91768 0.97630 0.97080 0.93472 0.73311 0.84696 0.85209 0.88462 0.83221 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.12 4.44 8.74 127.77 1.12 5.56 16 2 N -0.99 -43.84 2.68 -543.23 -1.46 -45.30 16 3 C 0.27 14.66 4.43 85.63 0.38 15.04 16 4 C -0.62 -37.35 9.38 25.60 0.24 -37.11 16 5 H 0.05 2.83 7.81 -2.91 -0.02 2.80 16 6 C -0.03 -1.87 5.46 84.65 0.46 -1.41 16 7 N -0.93 -58.88 13.65 21.45 0.29 -58.59 16 8 Si 1.12 52.83 29.90 68.60 2.05 54.88 16 9 H -0.28 -12.48 7.11 99.48 0.71 -11.77 16 10 H -0.28 -12.58 7.11 99.48 0.71 -11.88 16 11 H -0.27 -11.88 7.11 99.48 0.71 -11.17 16 12 S 2.80 108.54 6.04 -56.49 -0.34 108.20 16 13 O -1.00 -38.83 16.58 -128.00 -2.12 -40.96 16 14 O -1.00 -47.87 17.11 -128.00 -2.19 -50.06 16 15 N -1.10 -28.30 5.55 -169.56 -0.94 -29.24 16 16 C 0.08 1.66 3.66 44.95 0.16 1.82 16 17 H 0.14 2.63 7.20 -2.39 -0.02 2.61 16 18 C -0.14 -1.14 6.89 31.64 0.22 -0.92 16 19 C 0.04 0.39 7.90 72.52 0.57 0.96 16 20 O -0.36 -7.63 11.05 -50.13 -0.55 -8.19 16 21 C 0.46 12.16 8.21 71.44 0.59 12.75 16 22 O -0.47 -17.14 15.57 21.66 0.34 -16.80 16 23 H 0.05 1.72 8.14 -2.39 -0.02 1.70 16 24 H 0.08 2.36 7.39 -2.39 -0.02 2.34 16 25 H 0.06 2.51 7.77 -2.39 -0.02 2.49 16 26 H 0.01 0.33 7.48 -2.39 -0.02 0.31 16 27 H 0.01 0.64 7.83 -2.39 -0.02 0.62 16 28 H 0.26 16.28 7.22 -92.71 -0.67 15.61 16 29 H 0.43 8.78 8.79 -96.75 -0.85 7.93 16 30 H 0.13 0.34 8.14 -2.39 -0.02 0.32 16 31 H 0.13 0.55 7.97 -2.39 -0.02 0.53 16 32 H 0.10 0.68 8.14 -2.39 -0.02 0.66 16 33 H 0.15 0.26 8.14 -2.39 -0.02 0.24 16 Total: -1.00 -85.22 296.15 -0.79 -86.01 By element: Atomic # 1 Polarization: 2.97 SS G_CDS: 0.39 Total: 3.36 kcal Atomic # 6 Polarization: -7.06 SS G_CDS: 3.74 Total: -3.32 kcal Atomic # 7 Polarization: -131.02 SS G_CDS: -2.10 Total: -133.13 kcal Atomic # 8 Polarization: -111.48 SS G_CDS: -4.53 Total: -116.01 kcal Atomic # 14 Polarization: 52.83 SS G_CDS: 2.05 Total: 54.88 kcal Atomic # 16 Polarization: 108.54 SS G_CDS: -0.34 Total: 108.20 kcal Total: -85.22 -0.79 -86.01 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001348524600.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -93.941 kcal (2) G-P(sol) polarization free energy of solvation -85.221 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -179.162 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.791 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -86.012 kcal (6) G-S(sol) free energy of system = (1) + (5) -179.953 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds