Wall clock time and date at job start Tue Mar 31 2020 00:53:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31515 * 1 3 3 Si 1.86799 * 120.00232 * 2 1 4 4 H 1.48500 * 109.47063 * 239.99692 * 3 2 1 5 5 H 1.48494 * 109.46933 * 359.97438 * 3 2 1 6 6 H 1.48503 * 109.47273 * 120.00150 * 3 2 1 7 7 C 1.37884 * 119.99448 * 179.97438 * 2 1 3 8 8 H 1.08001 * 119.99565 * 184.72132 * 7 2 1 9 9 C 1.50695 * 120.00285 * 4.72147 * 7 2 1 10 10 C 1.53001 * 115.54821 * 84.36009 * 9 7 2 11 11 N 1.46498 * 109.47506 * 65.36309 * 10 9 7 12 12 C 1.34776 * 120.00548 * 185.11611 * 11 10 9 13 13 O 1.21723 * 119.99589 * 359.72592 * 12 11 10 14 14 C 1.46249 * 120.00195 * 180.02562 * 12 11 10 15 15 C 1.35238 * 119.99925 * 186.32356 * 14 12 11 16 16 C 1.46403 * 120.00101 * 12.24233 * 15 14 12 17 17 N 1.30831 * 125.54763 * 46.43487 * 16 15 14 18 18 C 1.30812 * 115.81074 * 179.97438 * 17 16 15 19 19 C 1.34169 * 115.80775 * 359.97438 * 18 17 16 20 20 S 1.71065 * 109.15284 * 359.72922 * 19 18 17 21 21 C 1.52993 * 117.49963 * 230.02613 * 9 7 2 22 22 C 1.52989 * 117.50047 * 298.69035 * 9 7 2 23 23 H 0.97006 * 119.99645 * 5.00324 * 1 2 3 24 24 H 1.09008 * 109.46755 * 305.36372 * 10 9 7 25 25 H 1.08999 * 109.47365 * 185.36747 * 10 9 7 26 26 H 0.97010 * 119.99480 * 5.11126 * 11 10 9 27 27 H 1.07999 * 119.99758 * 6.32397 * 14 12 11 28 28 H 1.08000 * 120.00305 * 192.24437 * 15 14 12 29 29 H 1.08002 * 122.09649 * 180.02562 * 18 17 16 30 30 H 1.07998 * 125.42368 * 179.97438 * 19 18 17 31 31 H 1.09006 * 117.50046 * 215.00401 * 21 9 7 32 32 H 1.09000 * 117.50165 * 0.03211 * 21 9 7 33 33 H 1.09003 * 117.49871 * 359.97438 * 22 9 7 34 34 H 1.09001 * 117.50304 * 144.97459 * 22 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.1030 1.6963 -1.2125 5 1 1.2843 2.7464 -0.0006 6 1 3.1030 1.6963 1.2125 7 6 2.0044 -1.1942 0.0005 8 1 3.0817 -1.1957 0.0775 9 6 1.2547 -2.4970 -0.1063 10 6 0.9071 -2.9436 -1.5278 11 7 2.1400 -3.2356 -2.2633 12 6 2.0854 -3.5490 -3.5729 13 8 1.0111 -3.5944 -4.1435 14 6 3.3162 -3.8409 -4.3070 15 6 3.2766 -4.0295 -5.6456 16 6 2.0698 -3.6825 -6.3983 17 7 1.3912 -2.5705 -6.2773 18 6 0.3395 -2.4583 -7.0470 19 6 0.0964 -3.4984 -7.8590 20 16 1.3006 -4.6898 -7.6208 21 6 1.5829 -3.5868 0.9162 22 6 0.2552 -2.8299 1.0031 23 1 -0.4850 0.8369 -0.0733 24 1 0.3610 -2.1483 -2.0352 25 1 0.2881 -3.8399 -1.4860 26 1 2.9958 -3.2032 -1.8076 27 1 4.2566 -3.9060 -3.7800 28 1 4.1352 -4.4360 -6.1593 29 1 -0.2930 -1.5830 -7.0305 30 1 -0.7261 -3.5701 -8.5552 31 1 1.5511 -4.6220 0.5762 32 1 2.3407 -3.3613 1.6665 33 1 0.1402 -2.1068 1.8105 34 1 -0.6503 -3.3668 0.7203 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001349533226.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:53:42 Heat of formation + Delta-G solvation = 61.954023 kcal Electronic energy + Delta-G solvation = -18808.493023 eV Core-core repulsion = 15835.055075 eV Total energy + Delta-G solvation = -2973.437948 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 278.083 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -39.62665 -38.64514 -36.67468 -33.60344 -33.15598 -31.93084 -29.46306 -26.89183 -25.58696 -24.84115 -22.43485 -21.15478 -20.11008 -19.42092 -18.66632 -18.04460 -16.53163 -16.15676 -15.39014 -14.84408 -14.59423 -14.44626 -14.28335 -13.79046 -13.67987 -13.18823 -12.86486 -12.65008 -12.28910 -11.81593 -11.51348 -11.38168 -10.94726 -10.89119 -10.52776 -10.23722 -10.07940 -9.63317 -9.46978 -9.29047 -9.10345 -9.02756 -8.43839 -8.31792 -8.13426 -8.01378 -6.05334 -4.13669 0.50424 1.26854 1.83628 1.98741 3.26301 3.30355 3.36094 3.37751 3.83208 3.98045 4.38838 4.39431 5.05005 5.20445 5.24301 5.28091 5.40523 5.53077 5.65235 5.99144 6.03880 6.23425 6.34907 6.39970 6.49850 6.56277 6.70368 6.91293 7.12871 7.32968 7.44178 7.55192 7.83621 8.01221 8.34614 8.35986 8.86700 8.95512 9.53399 11.03004 Molecular weight = 278.08amu Principal moments of inertia in cm(-1) A = 0.021288 B = 0.004650 C = 0.004319 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1314.953708 B = 6019.984382 C = 6481.220647 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.875 5.875 2 C 0.074 3.926 3 Si 0.889 3.111 4 H -0.276 1.276 5 H -0.287 1.287 6 H -0.277 1.277 7 C -0.498 4.498 8 H 0.059 0.941 9 C 0.024 3.976 10 C 0.166 3.834 11 N -0.696 5.696 12 C 0.525 3.475 13 O -0.537 6.537 14 C -0.137 4.137 15 C -0.041 4.041 16 C 0.100 3.900 17 N -0.416 5.416 18 C 0.049 3.951 19 C -0.292 4.292 20 S 0.113 5.887 21 C -0.212 4.212 22 C -0.143 4.143 23 H 0.262 0.738 24 H 0.071 0.929 25 H 0.034 0.966 26 H 0.399 0.601 27 H 0.142 0.858 28 H 0.149 0.851 29 H 0.167 0.833 30 H 0.171 0.829 31 H 0.064 0.936 32 H 0.078 0.922 33 H 0.086 0.914 34 H 0.063 0.937 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.525 -9.214 -12.434 16.432 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.511 5.511 2 C -0.130 4.130 3 Si 0.716 3.284 4 H -0.202 1.202 5 H -0.213 1.213 6 H -0.202 1.202 7 C -0.535 4.535 8 H 0.077 0.923 9 C 0.024 3.976 10 C 0.043 3.957 11 N -0.344 5.344 12 C 0.312 3.688 13 O -0.417 6.417 14 C -0.164 4.164 15 C -0.064 4.064 16 C -0.174 4.174 17 N -0.128 5.128 18 C -0.107 4.107 19 C -0.431 4.431 20 S 0.371 5.629 21 C -0.249 4.249 22 C -0.181 4.181 23 H 0.071 0.929 24 H 0.089 0.911 25 H 0.052 0.948 26 H 0.233 0.767 27 H 0.159 0.841 28 H 0.167 0.833 29 H 0.184 0.816 30 H 0.189 0.811 31 H 0.083 0.917 32 H 0.096 0.904 33 H 0.105 0.895 34 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges 4.872 -9.675 -12.866 16.819 hybrid contribution 0.007 1.802 0.282 1.823 sum 4.879 -7.873 -12.585 15.626 Atomic orbital electron populations 1.69993 1.05875 1.27035 1.48210 1.24965 0.94795 0.98929 0.94286 0.86722 0.79729 0.83334 0.78611 1.20154 1.21295 1.20238 1.20291 0.92439 0.88674 1.52102 0.92302 1.19057 0.99303 0.93278 0.86004 1.20952 0.84249 0.97755 0.92717 1.45872 1.11600 1.67750 1.09146 1.18253 0.89368 0.78678 0.82520 1.90811 1.30565 1.52238 1.68038 1.23474 0.98750 0.99459 0.94692 1.21391 0.93513 0.98327 0.93162 1.25902 0.99633 0.92983 0.98893 1.66993 1.05753 1.20861 1.19199 1.21652 0.95663 0.99901 0.93507 1.26296 1.07432 0.99321 1.10087 1.83521 1.20424 1.22952 1.36038 1.23019 1.00637 0.95567 1.05684 1.22467 0.90806 1.01386 1.03455 0.92861 0.91107 0.94769 0.76728 0.84052 0.83315 0.81581 0.81114 0.91731 0.90386 0.89537 0.91886 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.88 -24.74 12.68 55.43 0.70 -24.04 16 2 C 0.07 2.00 5.43 -17.82 -0.10 1.91 16 3 Si 0.89 20.99 29.54 -169.99 -5.02 15.97 16 4 H -0.28 -6.52 7.11 56.52 0.40 -6.12 16 5 H -0.29 -6.82 7.11 56.52 0.40 -6.42 16 6 H -0.28 -6.42 7.11 56.52 0.40 -6.02 16 7 C -0.50 -12.94 8.72 -34.44 -0.30 -13.25 16 8 H 0.06 1.50 7.82 -52.49 -0.41 1.09 16 9 C 0.02 0.58 1.43 -155.67 -0.22 0.35 16 10 C 0.17 3.82 5.50 -4.04 -0.02 3.80 16 11 N -0.70 -13.54 5.46 -61.75 -0.34 -13.88 16 12 C 0.53 9.94 7.51 -13.04 -0.10 9.84 16 13 O -0.54 -12.00 13.08 5.17 0.07 -11.93 16 14 C -0.14 -1.87 10.06 -37.43 -0.38 -2.24 16 15 C -0.04 -0.51 10.22 -37.37 -0.38 -0.89 16 16 C 0.10 1.53 5.52 -14.69 -0.08 1.45 16 17 N -0.42 -7.52 8.55 -11.69 -0.10 -7.62 16 18 C 0.05 0.76 11.24 -19.42 -0.22 0.54 16 19 C -0.29 -3.79 11.08 29.30 0.32 -3.46 16 20 S 0.11 1.40 23.20 -107.50 -2.49 -1.09 16 21 C -0.21 -4.40 9.96 -26.70 -0.27 -4.66 16 22 C -0.14 -3.31 9.18 -26.70 -0.25 -3.56 16 23 H 0.26 7.16 8.32 -40.82 -0.34 6.82 16 24 H 0.07 1.90 8.14 -51.92 -0.42 1.48 16 25 H 0.03 0.77 8.09 -51.93 -0.42 0.35 16 26 H 0.40 6.91 8.44 -40.82 -0.34 6.56 16 27 H 0.14 1.37 8.06 -52.49 -0.42 0.95 16 28 H 0.15 1.16 8.06 -52.49 -0.42 0.74 16 29 H 0.17 2.32 8.06 -52.49 -0.42 1.89 16 30 H 0.17 1.69 8.06 -52.49 -0.42 1.27 16 31 H 0.06 1.22 8.14 -51.93 -0.42 0.79 16 32 H 0.08 1.59 8.14 -51.93 -0.42 1.17 16 33 H 0.09 2.15 8.14 -51.93 -0.42 1.73 16 34 H 0.06 1.39 8.14 -51.93 -0.42 0.97 16 LS Contribution 315.29 15.07 4.75 4.75 Total: -1.00 -32.23 315.29 -8.53 -40.76 By element: Atomic # 1 Polarization: 11.36 SS G_CDS: -4.11 Total: 7.25 kcal Atomic # 6 Polarization: -8.18 SS G_CDS: -1.98 Total: -10.17 kcal Atomic # 7 Polarization: -45.81 SS G_CDS: 0.27 Total: -45.54 kcal Atomic # 8 Polarization: -12.00 SS G_CDS: 0.07 Total: -11.93 kcal Atomic # 14 Polarization: 20.99 SS G_CDS: -5.02 Total: 15.97 kcal Atomic # 16 Polarization: 1.40 SS G_CDS: -2.49 Total: -1.09 kcal Total LS contribution 4.75 Total: 4.75 kcal Total: -32.23 -8.53 -40.76 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001349533226.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 102.715 kcal (2) G-P(sol) polarization free energy of solvation -32.230 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 70.484 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.530 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.761 kcal (6) G-S(sol) free energy of system = (1) + (5) 61.954 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds