Wall clock time and date at job start Tue Mar 31 2020 00:53:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31515 * 1 3 3 Si 1.86799 * 120.00232 * 2 1 4 4 H 1.48500 * 109.47063 * 239.99692 * 3 2 1 5 5 H 1.48494 * 109.46933 * 359.97438 * 3 2 1 6 6 H 1.48503 * 109.47273 * 120.00150 * 3 2 1 7 7 C 1.37884 * 119.99448 * 179.97438 * 2 1 3 8 8 H 1.08001 * 119.99565 * 184.72132 * 7 2 1 9 9 C 1.50695 * 120.00285 * 4.72147 * 7 2 1 10 10 C 1.53001 * 115.54821 * 84.36009 * 9 7 2 11 11 N 1.46498 * 109.47506 * 65.36309 * 10 9 7 12 12 C 1.34776 * 120.00548 * 185.11611 * 11 10 9 13 13 O 1.21723 * 119.99589 * 359.72592 * 12 11 10 14 14 C 1.46249 * 120.00195 * 180.02562 * 12 11 10 15 15 C 1.35238 * 119.99925 * 186.32356 * 14 12 11 16 16 C 1.46403 * 120.00101 * 12.24233 * 15 14 12 17 17 N 1.30831 * 125.54763 * 46.43487 * 16 15 14 18 18 C 1.30812 * 115.81074 * 179.97438 * 17 16 15 19 19 C 1.34169 * 115.80775 * 359.97438 * 18 17 16 20 20 S 1.71065 * 109.15284 * 359.72922 * 19 18 17 21 21 C 1.52993 * 117.49963 * 230.02613 * 9 7 2 22 22 C 1.52989 * 117.50047 * 298.69035 * 9 7 2 23 23 H 0.97006 * 119.99645 * 5.00324 * 1 2 3 24 24 H 1.09008 * 109.46755 * 305.36372 * 10 9 7 25 25 H 1.08999 * 109.47365 * 185.36747 * 10 9 7 26 26 H 0.97010 * 119.99480 * 5.11126 * 11 10 9 27 27 H 1.07999 * 119.99758 * 6.32397 * 14 12 11 28 28 H 1.08000 * 120.00305 * 192.24437 * 15 14 12 29 29 H 1.08002 * 122.09649 * 180.02562 * 18 17 16 30 30 H 1.07998 * 125.42368 * 179.97438 * 19 18 17 31 31 H 1.09006 * 117.50046 * 215.00401 * 21 9 7 32 32 H 1.09000 * 117.50165 * 0.03211 * 21 9 7 33 33 H 1.09003 * 117.49871 * 359.97438 * 22 9 7 34 34 H 1.09001 * 117.50304 * 144.97459 * 22 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.1030 1.6963 -1.2125 5 1 1.2843 2.7464 -0.0006 6 1 3.1030 1.6963 1.2125 7 6 2.0044 -1.1942 0.0005 8 1 3.0817 -1.1957 0.0775 9 6 1.2547 -2.4970 -0.1063 10 6 0.9071 -2.9436 -1.5278 11 7 2.1400 -3.2356 -2.2633 12 6 2.0854 -3.5490 -3.5729 13 8 1.0111 -3.5944 -4.1435 14 6 3.3162 -3.8409 -4.3070 15 6 3.2766 -4.0295 -5.6456 16 6 2.0698 -3.6825 -6.3983 17 7 1.3912 -2.5705 -6.2773 18 6 0.3395 -2.4583 -7.0470 19 6 0.0964 -3.4984 -7.8590 20 16 1.3006 -4.6898 -7.6208 21 6 1.5829 -3.5868 0.9162 22 6 0.2552 -2.8299 1.0031 23 1 -0.4850 0.8369 -0.0733 24 1 0.3610 -2.1483 -2.0352 25 1 0.2881 -3.8399 -1.4860 26 1 2.9958 -3.2032 -1.8076 27 1 4.2566 -3.9060 -3.7800 28 1 4.1352 -4.4360 -6.1593 29 1 -0.2930 -1.5830 -7.0305 30 1 -0.7261 -3.5701 -8.5552 31 1 1.5511 -4.6220 0.5762 32 1 2.3407 -3.3613 1.6665 33 1 0.1402 -2.1068 1.8105 34 1 -0.6503 -3.3668 0.7203 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001349533226.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:53:42 Heat of formation + Delta-G solvation = 40.493069 kcal Electronic energy + Delta-G solvation = -18809.423639 eV Core-core repulsion = 15835.055075 eV Total energy + Delta-G solvation = -2974.368565 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 278.083 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -40.89513 -40.00165 -38.44270 -34.91993 -34.56440 -33.95277 -30.58709 -28.47927 -27.40709 -26.23620 -23.66951 -22.91399 -21.46316 -21.22438 -19.84675 -19.30762 -18.07095 -17.67199 -16.77999 -16.63543 -16.11415 -15.92898 -15.62819 -15.38883 -14.79955 -14.58791 -14.42998 -13.90883 -13.69844 -13.47589 -13.35077 -12.91738 -12.78938 -12.43006 -12.41212 -12.02564 -11.41796 -11.14322 -10.99148 -10.88780 -10.51734 -10.40274 -10.15870 -10.04365 -9.73828 -9.26643 -8.11136 -6.23222 -0.54869 0.22303 0.80826 0.90599 1.41406 1.43789 1.49331 2.10366 2.41221 2.48418 2.57613 3.18666 3.42782 3.51846 4.01064 4.20213 4.27001 4.32894 4.55195 4.55982 4.60734 4.65664 4.72035 4.98604 4.99446 5.02300 5.27946 5.29157 5.35211 5.59137 5.63634 5.74200 5.78664 6.36226 6.83275 6.89342 6.93962 7.46116 7.51684 8.96868 Molecular weight = 278.08amu Principal moments of inertia in cm(-1) A = 0.021288 B = 0.004650 C = 0.004319 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1314.953708 B = 6019.984382 C = 6481.220647 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.910 5.910 2 C 0.022 3.978 3 Si 0.946 3.054 4 H -0.275 1.275 5 H -0.293 1.293 6 H -0.265 1.265 7 C -0.499 4.499 8 H 0.065 0.935 9 C 0.001 3.999 10 C 0.187 3.813 11 N -0.695 5.695 12 C 0.516 3.484 13 O -0.579 6.579 14 C -0.154 4.154 15 C -0.022 4.022 16 C 0.062 3.938 17 N -0.465 5.465 18 C 0.012 3.988 19 C -0.287 4.287 20 S 0.179 5.821 21 C -0.172 4.172 22 C -0.157 4.157 23 H 0.257 0.743 24 H 0.018 0.982 25 H 0.032 0.968 26 H 0.411 0.589 27 H 0.186 0.814 28 H 0.204 0.796 29 H 0.166 0.834 30 H 0.201 0.799 31 H 0.091 0.909 32 H 0.087 0.913 33 H 0.063 0.937 34 H 0.067 0.933 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.913 -10.965 -13.482 19.095 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.548 5.548 2 C -0.178 4.178 3 Si 0.772 3.228 4 H -0.200 1.200 5 H -0.219 1.219 6 H -0.190 1.190 7 C -0.537 4.537 8 H 0.083 0.917 9 C 0.000 4.000 10 C 0.062 3.938 11 N -0.344 5.344 12 C 0.306 3.694 13 O -0.460 6.460 14 C -0.180 4.180 15 C -0.044 4.044 16 C -0.211 4.211 17 N -0.179 5.179 18 C -0.144 4.144 19 C -0.427 4.427 20 S 0.437 5.563 21 C -0.209 4.209 22 C -0.195 4.195 23 H 0.066 0.934 24 H 0.037 0.963 25 H 0.050 0.950 26 H 0.246 0.754 27 H 0.203 0.797 28 H 0.220 0.780 29 H 0.183 0.817 30 H 0.218 0.782 31 H 0.110 0.890 32 H 0.105 0.895 33 H 0.081 0.919 34 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges 7.310 -11.442 -13.908 19.437 hybrid contribution -0.805 2.263 0.487 2.451 sum 6.505 -9.180 -13.421 17.513 Atomic orbital electron populations 1.70128 1.07285 1.27289 1.50075 1.25705 0.95447 1.02119 0.94509 0.85797 0.78469 0.79623 0.78867 1.20001 1.21866 1.18976 1.20647 0.92849 0.89663 1.50559 0.91726 1.19084 1.00230 0.94052 0.86643 1.20418 0.85447 0.95713 0.92217 1.45755 1.10774 1.68203 1.09672 1.19190 0.90889 0.77244 0.82107 1.90788 1.32775 1.53839 1.68635 1.23518 0.97819 1.01574 0.95134 1.22127 0.93785 0.95697 0.92808 1.26504 1.00804 0.93417 1.00334 1.66954 1.07085 1.23136 1.20693 1.21810 0.96260 1.01289 0.94991 1.26726 1.08128 0.98622 1.09204 1.83187 1.18693 1.20876 1.33560 1.23002 0.98528 0.95925 1.03485 1.22383 0.92276 1.02023 1.02854 0.93423 0.96315 0.94972 0.75359 0.79678 0.77973 0.81701 0.78216 0.89042 0.89490 0.91859 0.91486 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -53.24 12.68 21.45 0.27 -52.97 16 2 C 0.02 1.22 5.43 84.66 0.46 1.68 16 3 Si 0.95 43.57 29.54 68.60 2.03 45.59 16 4 H -0.27 -12.47 7.11 99.48 0.71 -11.76 16 5 H -0.29 -13.61 7.11 99.48 0.71 -12.91 16 6 H -0.26 -11.59 7.11 99.48 0.71 -10.88 16 7 C -0.50 -26.02 8.72 25.60 0.22 -25.79 16 8 H 0.06 3.22 7.82 -2.91 -0.02 3.19 16 9 C 0.00 0.03 1.43 -52.93 -0.08 -0.05 16 10 C 0.19 8.80 5.50 86.38 0.48 9.27 16 11 N -0.69 -26.86 5.46 -467.50 -2.55 -29.42 16 12 C 0.52 19.38 7.51 86.32 0.65 20.03 16 13 O -0.58 -26.43 13.08 -4.42 -0.06 -26.49 16 14 C -0.15 -3.82 10.06 23.66 0.24 -3.58 16 15 C -0.02 -0.47 10.22 23.70 0.24 -0.23 16 16 C 0.06 1.82 5.52 86.97 0.48 2.30 16 17 N -0.46 -17.04 8.55 -190.91 -1.63 -18.67 16 18 C 0.01 0.38 11.24 83.92 0.94 1.32 16 19 C -0.29 -7.09 11.08 66.89 0.74 -6.35 16 20 S 0.18 4.00 23.20 -56.49 -1.31 2.69 16 21 C -0.17 -6.84 9.96 30.62 0.30 -6.54 16 22 C -0.16 -7.34 9.18 30.61 0.28 -7.06 16 23 H 0.26 14.61 8.32 -92.70 -0.77 13.84 16 24 H 0.02 1.06 8.14 -2.38 -0.02 1.04 16 25 H 0.03 1.49 8.09 -2.39 -0.02 1.47 16 26 H 0.41 13.65 8.44 -92.70 -0.78 12.87 16 27 H 0.19 2.81 8.06 -2.91 -0.02 2.78 16 28 H 0.20 2.08 8.06 -2.91 -0.02 2.05 16 29 H 0.17 4.92 8.06 -2.91 -0.02 4.90 16 30 H 0.20 3.52 8.06 -2.91 -0.02 3.50 16 31 H 0.09 3.16 8.14 -2.38 -0.02 3.14 16 32 H 0.09 3.32 8.14 -2.39 -0.02 3.30 16 33 H 0.06 3.22 8.14 -2.39 -0.02 3.20 16 34 H 0.07 3.01 8.14 -2.39 -0.02 2.99 16 Total: -1.00 -73.56 315.29 2.04 -71.52 By element: Atomic # 1 Polarization: 22.40 SS G_CDS: 0.33 Total: 22.73 kcal Atomic # 6 Polarization: -19.95 SS G_CDS: 4.96 Total: -14.99 kcal Atomic # 7 Polarization: -97.15 SS G_CDS: -3.91 Total: -101.06 kcal Atomic # 8 Polarization: -26.43 SS G_CDS: -0.06 Total: -26.49 kcal Atomic # 14 Polarization: 43.57 SS G_CDS: 2.03 Total: 45.59 kcal Atomic # 16 Polarization: 4.00 SS G_CDS: -1.31 Total: 2.69 kcal Total: -73.56 2.04 -71.52 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001349533226.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 112.013 kcal (2) G-P(sol) polarization free energy of solvation -73.563 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 38.450 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.043 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.520 kcal (6) G-S(sol) free energy of system = (1) + (5) 40.493 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds