Wall clock time and date at job start Tue Mar 31 2020 00:02:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31511 * 1 3 3 Si 1.86798 * 119.99828 * 2 1 4 4 H 1.48500 * 109.47454 * 240.00357 * 3 2 1 5 5 H 1.48506 * 109.47297 * 0.02562 * 3 2 1 6 6 H 1.48503 * 109.47261 * 120.00350 * 3 2 1 7 7 C 1.37875 * 120.00192 * 180.02562 * 2 1 3 8 8 H 1.08005 * 120.00135 * 179.97438 * 7 2 1 9 9 C 1.50698 * 120.00046 * 359.97438 * 7 2 1 10 10 H 1.08993 * 109.47304 * 300.00055 * 9 7 2 11 11 O 1.42906 * 109.46805 * 60.00720 * 9 7 2 12 12 C 1.53006 * 109.47184 * 180.02562 * 9 7 2 13 13 N 1.46496 * 109.46995 * 180.02562 * 12 9 7 14 14 C 1.35485 * 127.82640 * 90.03074 * 13 12 9 15 15 O 1.21605 * 126.87610 * 359.96763 * 14 13 12 16 16 O 1.34251 * 106.24284 * 179.97438 * 14 13 12 17 17 N 1.21011 * 110.88722 * 359.97438 * 16 14 13 18 18 C 1.29859 * 111.56511 * 359.73763 * 17 16 14 19 19 C 1.48160 * 126.52305 * 180.26256 * 18 17 16 20 20 C 1.39501 * 120.10910 * 359.89916 * 19 18 17 21 21 N 1.32004 * 119.86796 * 179.79989 * 20 19 18 22 22 C 1.32199 * 120.08895 * 0.45873 * 21 20 19 23 23 C 1.38524 * 120.21769 * 359.77340 * 22 21 20 24 24 N 1.31955 * 120.13189 * 0.02562 * 23 22 21 25 25 H 0.96996 * 120.00505 * 359.97438 * 1 2 3 26 26 H 0.96696 * 113.99911 * 59.99931 * 11 9 7 27 27 H 1.09001 * 109.46801 * 300.00442 * 12 9 7 28 28 H 1.09001 * 109.46998 * 60.00038 * 12 9 7 29 29 H 1.07998 * 120.06401 * 0.03195 * 20 19 18 30 30 H 1.08003 * 119.89131 * 179.75292 * 22 21 20 31 31 H 1.07996 * 119.93302 * 179.97438 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 3.1028 1.6966 -1.2125 5 1 1.2840 2.7465 0.0006 6 1 3.1029 1.6964 1.2125 7 6 2.0045 -1.1940 -0.0005 8 1 3.0846 -1.1940 -0.0010 9 6 1.2511 -2.4991 -0.0005 10 1 0.6248 -2.5571 0.8896 11 8 0.4292 -2.5746 -1.1672 12 6 2.2454 -3.6621 -0.0005 13 7 1.5129 -4.9308 -0.0012 14 6 1.0984 -5.6503 -1.0717 15 8 1.2592 -5.3722 -2.2445 16 8 0.4743 -6.7317 -0.5783 17 7 0.4814 -6.7195 0.6317 18 6 1.0926 -5.6714 1.0948 19 6 1.2983 -5.3293 2.5216 20 6 0.8110 -6.1722 3.5207 21 7 1.0005 -5.8648 4.7904 22 6 1.6427 -4.7559 5.1151 23 6 2.1239 -3.9138 4.1260 24 7 1.9429 -4.2147 2.8540 25 1 -0.4851 0.8400 0.0004 26 1 0.9211 -2.5291 -1.9984 27 1 2.8721 -3.6042 -0.8905 28 1 2.8721 -3.6043 0.8895 29 1 0.2831 -7.0764 3.2558 30 1 1.7925 -4.5055 6.1550 31 1 2.6476 -3.0089 4.3965 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001458945452.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:02:30 Heat of formation + Delta-G solvation = 29.742711 kcal Electronic energy + Delta-G solvation = -21643.642018 eV Core-core repulsion = 18122.514068 eV Total energy + Delta-G solvation = -3521.127950 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 278.085 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -45.02514 -41.20908 -38.24430 -36.90797 -35.35266 -34.38917 -32.76050 -32.22904 -30.79235 -29.20194 -26.24887 -25.57444 -24.81987 -23.24355 -22.12614 -21.00645 -18.31166 -18.12625 -17.64665 -17.35689 -17.02620 -16.30496 -15.89888 -15.11452 -15.05430 -14.74185 -14.56149 -14.22872 -13.81155 -13.44878 -13.17560 -13.00612 -12.50634 -12.09246 -11.89917 -11.45773 -11.26684 -11.06447 -10.98492 -10.92587 -10.35778 -10.22096 -9.84089 -9.33766 -9.19179 -8.73052 -8.67277 -8.14885 -6.13130 -4.33607 0.12383 0.85410 1.92671 2.10754 2.57056 3.05947 3.21148 3.27660 3.28503 3.53573 3.72333 3.94901 4.16591 4.28503 4.49483 4.69017 4.95538 5.06158 5.08538 5.16268 5.31434 5.91636 6.02289 6.04967 6.16472 6.28284 6.55335 6.97506 7.46124 7.50087 7.67778 7.78256 7.97338 8.27283 8.67574 9.25445 9.43522 10.91267 Molecular weight = 278.08amu Principal moments of inertia in cm(-1) A = 0.014831 B = 0.007310 C = 0.005230 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1887.430366 B = 3829.204376 C = 5352.212350 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.856 5.856 2 C 0.082 3.918 3 Si 0.894 3.106 4 H -0.275 1.275 5 H -0.286 1.286 6 H -0.275 1.275 7 C -0.572 4.572 8 H 0.060 0.940 9 C 0.225 3.775 10 H 0.062 0.938 11 O -0.563 6.563 12 C 0.101 3.899 13 N -0.518 5.518 14 C 0.563 3.437 15 O -0.475 6.475 16 O -0.004 6.004 17 N -0.329 5.329 18 C 0.278 3.722 19 C 0.141 3.859 20 C 0.097 3.903 21 N -0.435 5.435 22 C 0.063 3.937 23 C 0.068 3.932 24 N -0.401 5.401 25 H 0.263 0.737 26 H 0.351 0.649 27 H 0.086 0.914 28 H 0.110 0.890 29 H 0.181 0.819 30 H 0.178 0.822 31 H 0.183 0.817 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.826 -9.291 9.853 14.377 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.491 5.491 2 C -0.125 4.125 3 Si 0.721 3.279 4 H -0.200 1.200 5 H -0.212 1.212 6 H -0.200 1.200 7 C -0.610 4.610 8 H 0.078 0.922 9 C 0.166 3.834 10 H 0.079 0.921 11 O -0.366 6.366 12 C -0.017 4.017 13 N -0.254 5.254 14 C 0.314 3.686 15 O -0.354 6.354 16 O -0.049 6.049 17 N -0.065 5.065 18 C 0.009 3.991 19 C 0.001 3.999 20 C -0.065 4.065 21 N -0.149 5.149 22 C -0.098 4.098 23 C -0.093 4.093 24 N -0.117 5.117 25 H 0.073 0.927 26 H 0.195 0.805 27 H 0.105 0.895 28 H 0.128 0.872 29 H 0.198 0.802 30 H 0.195 0.805 31 H 0.200 0.800 Dipole moment (debyes) X Y Z Total from point charges 3.743 -9.966 9.813 14.478 hybrid contribution 1.260 1.828 -0.630 2.308 sum 5.003 -8.137 9.183 13.250 Atomic orbital electron populations 1.70068 1.06035 1.26846 1.46104 1.25005 0.94702 0.99217 0.93572 0.86650 0.79636 0.82781 0.78796 1.19989 1.21155 1.20039 1.21346 0.93139 0.90595 1.55933 0.92209 1.19696 0.88147 0.88760 0.86799 0.92056 1.86577 1.38385 1.96118 1.15471 1.23309 0.95935 0.78010 1.04413 1.47232 1.50450 1.22986 1.04690 1.20433 0.80815 0.80461 0.86867 1.91128 1.60324 1.71232 1.12715 1.85508 1.64514 1.40827 1.14056 1.74059 1.20901 1.19220 0.92346 1.21881 0.97743 0.89915 0.89565 1.18918 0.98875 0.93480 0.88603 1.23702 0.95577 0.99553 0.87620 1.68592 1.11127 1.16645 1.18492 1.24059 0.93090 0.90446 1.02185 1.23934 0.97307 1.00558 0.87551 1.68375 1.09411 1.13219 1.20684 0.92725 0.80482 0.89539 0.87156 0.80174 0.80528 0.80029 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.86 -24.63 12.84 55.43 0.71 -23.91 16 2 C 0.08 2.20 5.40 -17.82 -0.10 2.11 16 3 Si 0.89 20.26 29.54 -169.99 -5.02 15.24 16 4 H -0.27 -6.18 7.11 56.52 0.40 -5.77 16 5 H -0.29 -6.51 7.11 56.52 0.40 -6.10 16 6 H -0.27 -6.03 7.11 56.52 0.40 -5.63 16 7 C -0.57 -14.76 8.76 -34.44 -0.30 -15.06 16 8 H 0.06 1.47 7.74 -52.48 -0.41 1.06 16 9 C 0.22 5.46 3.10 -27.88 -0.09 5.38 16 10 H 0.06 1.66 8.14 -51.93 -0.42 1.24 16 11 O -0.56 -14.79 12.35 -35.23 -0.43 -15.23 16 12 C 0.10 2.00 5.35 -4.04 -0.02 1.98 16 13 N -0.52 -9.82 2.76 -119.31 -0.33 -10.15 16 14 C 0.56 11.18 9.07 54.34 0.49 11.67 16 15 O -0.47 -10.48 18.00 -18.89 -0.34 -10.82 16 16 O 0.00 -0.07 11.25 -7.57 -0.09 -0.15 16 17 N -0.33 -5.38 11.71 32.11 0.38 -5.00 16 18 C 0.28 4.65 7.85 -153.60 -1.21 3.45 16 19 C 0.14 2.06 6.75 -82.82 -0.56 1.50 16 20 C 0.10 1.17 10.88 -17.01 -0.18 0.99 16 21 N -0.43 -4.92 10.49 -12.75 -0.13 -5.05 16 22 C 0.06 0.58 11.22 -17.29 -0.19 0.38 16 23 C 0.07 0.73 11.22 -17.39 -0.20 0.54 16 24 N -0.40 -5.87 8.15 -9.62 -0.08 -5.95 16 25 H 0.26 7.20 8.31 -40.82 -0.34 6.86 16 26 H 0.35 8.59 9.04 45.56 0.41 9.01 16 27 H 0.09 1.68 8.14 -51.93 -0.42 1.25 16 28 H 0.11 2.01 6.40 -51.93 -0.33 1.68 16 29 H 0.18 1.84 7.87 -52.49 -0.41 1.43 16 30 H 0.18 0.90 8.06 -52.48 -0.42 0.48 16 31 H 0.18 1.42 8.06 -52.49 -0.42 0.99 16 LS Contribution 289.76 15.07 4.37 4.37 Total: -1.00 -32.35 289.76 -4.89 -37.23 By element: Atomic # 1 Polarization: 8.07 SS G_CDS: -1.57 Total: 6.50 kcal Atomic # 6 Polarization: 15.28 SS G_CDS: -2.35 Total: 12.92 kcal Atomic # 7 Polarization: -50.61 SS G_CDS: 0.55 Total: -50.07 kcal Atomic # 8 Polarization: -25.34 SS G_CDS: -0.86 Total: -26.20 kcal Atomic # 14 Polarization: 20.26 SS G_CDS: -5.02 Total: 15.24 kcal Total LS contribution 4.37 Total: 4.37 kcal Total: -32.35 -4.89 -37.23 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001458945452.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 66.976 kcal (2) G-P(sol) polarization free energy of solvation -32.346 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 34.629 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.887 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.233 kcal (6) G-S(sol) free energy of system = (1) + (5) 29.743 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds