Wall clock time and date at job start Tue Mar 31 2020 00:02:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31511 * 1 3 3 Si 1.86798 * 119.99828 * 2 1 4 4 H 1.48500 * 109.47454 * 240.00357 * 3 2 1 5 5 H 1.48506 * 109.47297 * 0.02562 * 3 2 1 6 6 H 1.48503 * 109.47261 * 120.00350 * 3 2 1 7 7 C 1.37875 * 120.00192 * 180.02562 * 2 1 3 8 8 H 1.08005 * 120.00135 * 179.97438 * 7 2 1 9 9 C 1.50698 * 120.00046 * 359.97438 * 7 2 1 10 10 H 1.08993 * 109.47304 * 300.00055 * 9 7 2 11 11 O 1.42906 * 109.46805 * 60.00720 * 9 7 2 12 12 C 1.53006 * 109.47184 * 180.02562 * 9 7 2 13 13 N 1.46496 * 109.46995 * 180.02562 * 12 9 7 14 14 C 1.35485 * 127.82640 * 90.03074 * 13 12 9 15 15 O 1.21605 * 126.87610 * 359.96763 * 14 13 12 16 16 O 1.34251 * 106.24284 * 179.97438 * 14 13 12 17 17 N 1.21011 * 110.88722 * 359.97438 * 16 14 13 18 18 C 1.29859 * 111.56511 * 359.73763 * 17 16 14 19 19 C 1.48160 * 126.52305 * 180.26256 * 18 17 16 20 20 C 1.39501 * 120.10910 * 359.89916 * 19 18 17 21 21 N 1.32004 * 119.86796 * 179.79989 * 20 19 18 22 22 C 1.32199 * 120.08895 * 0.45873 * 21 20 19 23 23 C 1.38524 * 120.21769 * 359.77340 * 22 21 20 24 24 N 1.31955 * 120.13189 * 0.02562 * 23 22 21 25 25 H 0.96996 * 120.00505 * 359.97438 * 1 2 3 26 26 H 0.96696 * 113.99911 * 59.99931 * 11 9 7 27 27 H 1.09001 * 109.46801 * 300.00442 * 12 9 7 28 28 H 1.09001 * 109.46998 * 60.00038 * 12 9 7 29 29 H 1.07998 * 120.06401 * 0.03195 * 20 19 18 30 30 H 1.08003 * 119.89131 * 179.75292 * 22 21 20 31 31 H 1.07996 * 119.93302 * 179.97438 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 3.1028 1.6966 -1.2125 5 1 1.2840 2.7465 0.0006 6 1 3.1029 1.6964 1.2125 7 6 2.0045 -1.1940 -0.0005 8 1 3.0846 -1.1940 -0.0010 9 6 1.2511 -2.4991 -0.0005 10 1 0.6248 -2.5571 0.8896 11 8 0.4292 -2.5746 -1.1672 12 6 2.2454 -3.6621 -0.0005 13 7 1.5129 -4.9308 -0.0012 14 6 1.0984 -5.6503 -1.0717 15 8 1.2592 -5.3722 -2.2445 16 8 0.4743 -6.7317 -0.5783 17 7 0.4814 -6.7195 0.6317 18 6 1.0926 -5.6714 1.0948 19 6 1.2983 -5.3293 2.5216 20 6 0.8110 -6.1722 3.5207 21 7 1.0005 -5.8648 4.7904 22 6 1.6427 -4.7559 5.1151 23 6 2.1239 -3.9138 4.1260 24 7 1.9429 -4.2147 2.8540 25 1 -0.4851 0.8400 0.0004 26 1 0.9211 -2.5291 -1.9984 27 1 2.8721 -3.6042 -0.8905 28 1 2.8721 -3.6043 0.8895 29 1 0.2831 -7.0764 3.2558 30 1 1.7925 -4.5055 6.1550 31 1 2.6476 -3.0089 4.3965 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001458945452.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:02:27 Heat of formation + Delta-G solvation = 5.761892 kcal Electronic energy + Delta-G solvation = -21644.681904 eV Core-core repulsion = 18122.514068 eV Total energy + Delta-G solvation = -3522.167836 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 278.085 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -46.43801 -42.12420 -39.84077 -38.53569 -37.09238 -35.37038 -34.30508 -33.99781 -31.97933 -30.94344 -27.90295 -26.86009 -25.78697 -24.79157 -23.42124 -22.78339 -19.76870 -19.55701 -19.09004 -18.65113 -17.96714 -17.66291 -17.38637 -16.70001 -16.68473 -16.29434 -15.98917 -15.63393 -15.24207 -15.12340 -14.68150 -14.24268 -13.74376 -13.65264 -13.23088 -13.04708 -12.89017 -12.75364 -12.54755 -12.37943 -12.11491 -11.85668 -11.37241 -10.81035 -10.72549 -10.29468 -10.21925 -9.83852 -8.16363 -6.43308 -0.87364 -0.04044 0.59556 0.71667 1.02610 1.43747 1.45836 1.53528 1.86113 2.37484 2.43662 2.62741 3.04286 3.11304 3.24588 3.45717 3.58006 3.59175 4.09645 4.12651 4.26709 4.30663 4.50224 4.52494 4.70563 4.88616 5.25906 5.51080 5.65180 5.94869 6.09528 6.23446 6.57528 6.66232 6.84039 7.25163 7.41416 8.88682 Molecular weight = 278.08amu Principal moments of inertia in cm(-1) A = 0.014831 B = 0.007310 C = 0.005230 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1887.430366 B = 3829.204376 C = 5352.212350 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.901 5.901 2 C 0.029 3.971 3 Si 0.964 3.036 4 H -0.270 1.270 5 H -0.290 1.290 6 H -0.258 1.258 7 C -0.578 4.578 8 H 0.073 0.927 9 C 0.228 3.772 10 H 0.030 0.970 11 O -0.583 6.583 12 C 0.120 3.880 13 N -0.524 5.524 14 C 0.558 3.442 15 O -0.504 6.504 16 O -0.004 6.004 17 N -0.326 5.326 18 C 0.287 3.713 19 C 0.107 3.893 20 C 0.107 3.893 21 N -0.447 5.447 22 C 0.091 3.909 23 C 0.065 3.935 24 N -0.436 5.436 25 H 0.261 0.739 26 H 0.355 0.645 27 H 0.090 0.910 28 H 0.128 0.872 29 H 0.193 0.807 30 H 0.225 0.775 31 H 0.211 0.789 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.284 -8.883 12.093 16.268 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.538 5.538 2 C -0.174 4.174 3 Si 0.788 3.212 4 H -0.195 1.195 5 H -0.216 1.216 6 H -0.183 1.183 7 C -0.616 4.616 8 H 0.091 0.909 9 C 0.169 3.831 10 H 0.048 0.952 11 O -0.387 6.387 12 C 0.001 3.999 13 N -0.259 5.259 14 C 0.310 3.690 15 O -0.386 6.386 16 O -0.047 6.047 17 N -0.063 5.063 18 C 0.019 3.981 19 C -0.031 4.031 20 C -0.053 4.053 21 N -0.161 5.161 22 C -0.071 4.071 23 C -0.098 4.098 24 N -0.153 5.153 25 H 0.070 0.930 26 H 0.200 0.800 27 H 0.108 0.892 28 H 0.146 0.854 29 H 0.210 0.790 30 H 0.242 0.758 31 H 0.228 0.772 Dipole moment (debyes) X Y Z Total from point charges 5.201 -9.614 12.044 16.265 hybrid contribution 0.806 1.693 -1.127 2.188 sum 6.007 -7.921 10.917 14.765 Atomic orbital electron populations 1.70228 1.07947 1.27564 1.48019 1.25894 0.95365 1.03044 0.93124 0.85541 0.78215 0.77967 0.79428 1.19488 1.21624 1.18269 1.21741 0.93866 0.91245 1.54708 0.90891 1.19536 0.88066 0.90466 0.84990 0.95223 1.86536 1.39590 1.96349 1.16241 1.22935 0.94613 0.76900 1.05408 1.47147 1.50555 1.22856 1.05366 1.20552 0.80797 0.80888 0.86740 1.91089 1.61520 1.72122 1.13836 1.85513 1.64345 1.40043 1.14785 1.74039 1.21458 1.19363 0.91477 1.22430 0.96407 0.89035 0.90270 1.18868 1.01711 0.94968 0.87584 1.23841 0.94640 0.99310 0.87525 1.68732 1.11974 1.17760 1.17626 1.24833 0.89777 0.88521 1.03988 1.24535 0.97074 1.01675 0.86491 1.68233 1.10345 1.13626 1.23074 0.93013 0.79961 0.89176 0.85406 0.79008 0.75838 0.77232 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -52.59 12.84 21.45 0.28 -52.32 16 2 C 0.03 1.52 5.40 84.65 0.46 1.98 16 3 Si 0.96 41.05 29.54 68.60 2.03 43.07 16 4 H -0.27 -11.21 7.11 99.48 0.71 -10.50 16 5 H -0.29 -12.47 7.11 99.48 0.71 -11.76 16 6 H -0.26 -10.23 7.11 99.48 0.71 -9.52 16 7 C -0.58 -29.58 8.76 25.60 0.22 -29.35 16 8 H 0.07 3.47 7.74 -2.91 -0.02 3.45 16 9 C 0.23 11.22 3.10 29.85 0.09 11.31 16 10 H 0.03 1.66 8.14 -2.39 -0.02 1.64 16 11 O -0.58 -31.47 12.35 -148.98 -1.84 -33.30 16 12 C 0.12 4.73 5.35 86.38 0.46 5.19 16 13 N -0.52 -20.06 2.76 -762.77 -2.11 -22.17 16 14 C 0.56 22.62 9.07 129.69 1.18 23.80 16 15 O -0.50 -22.81 18.00 19.06 0.34 -22.46 16 16 O 0.00 -0.15 11.25 92.61 1.04 0.89 16 17 N -0.33 -10.68 11.71 -54.07 -0.63 -11.31 16 18 C 0.29 9.62 7.85 136.30 1.07 10.69 16 19 C 0.11 3.03 6.75 41.91 0.28 3.31 16 20 C 0.11 2.42 10.88 84.97 0.92 3.34 16 21 N -0.45 -8.86 10.49 -194.24 -2.04 -10.90 16 22 C 0.09 1.31 11.22 84.71 0.95 2.26 16 23 C 0.07 1.21 11.22 84.74 0.95 2.16 16 24 N -0.44 -12.22 8.15 -184.35 -1.50 -13.73 16 25 H 0.26 14.54 8.31 -92.71 -0.77 13.77 16 26 H 0.36 17.92 9.04 -74.06 -0.67 17.25 16 27 H 0.09 3.48 8.14 -2.39 -0.02 3.46 16 28 H 0.13 4.58 6.40 -2.39 -0.02 4.57 16 29 H 0.19 3.69 7.87 -2.91 -0.02 3.66 16 30 H 0.23 1.01 8.06 -2.91 -0.02 0.99 16 31 H 0.21 2.50 8.06 -2.91 -0.02 2.48 16 Total: -1.00 -70.75 289.76 2.69 -68.06 By element: Atomic # 1 Polarization: 18.95 SS G_CDS: 0.53 Total: 19.48 kcal Atomic # 6 Polarization: 28.10 SS G_CDS: 6.59 Total: 34.69 kcal Atomic # 7 Polarization: -104.42 SS G_CDS: -6.00 Total: -110.42 kcal Atomic # 8 Polarization: -54.43 SS G_CDS: -0.45 Total: -54.88 kcal Atomic # 14 Polarization: 41.05 SS G_CDS: 2.03 Total: 43.07 kcal Total: -70.75 2.69 -68.06 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001458945452.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 73.820 kcal (2) G-P(sol) polarization free energy of solvation -70.752 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 3.068 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.694 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.058 kcal (6) G-S(sol) free energy of system = (1) + (5) 5.762 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds