Wall clock time and date at job start Tue Mar 31 2020 00:00:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13597 * 1 3 3 C 1.43201 * 179.97438 * 2 1 4 4 C 1.38267 * 120.73875 * 269.93140 * 3 2 1 5 5 N 1.35094 * 119.01406 * 179.97438 * 4 3 2 6 6 C 1.46505 * 119.71356 * 179.97438 * 5 4 3 7 7 C 1.50700 * 109.46779 * 90.00187 * 6 5 4 8 8 O 1.21282 * 120.00307 * 359.97438 * 7 6 5 9 9 N 1.34778 * 120.00155 * 179.97438 * 7 6 5 10 10 C 1.46491 * 120.00241 * 179.97438 * 9 7 6 11 11 C 1.50702 * 109.47036 * 179.97438 * 10 9 7 12 12 H 1.07999 * 119.99895 * 0.02562 * 11 10 9 13 13 C 1.37882 * 119.99907 * 180.02562 * 11 10 9 14 14 N 1.31514 * 120.00008 * 0.02562 * 13 11 10 15 15 Si 1.86801 * 119.99935 * 180.02562 * 13 11 10 16 16 H 1.48501 * 109.47306 * 60.00068 * 15 13 11 17 17 H 1.48500 * 109.47075 * 180.02562 * 15 13 11 18 18 H 1.48500 * 109.47158 * 300.00279 * 15 13 11 19 19 C 1.34457 * 120.56902 * 359.97438 * 5 4 3 20 20 O 1.21918 * 119.20065 * 179.97438 * 19 5 4 21 21 N 1.33304 * 121.59578 * 359.97438 * 19 5 4 22 22 C 1.32221 * 120.94345 * 0.02613 * 21 19 5 23 23 O 1.35032 * 120.32279 * 180.02562 * 22 21 19 24 24 H 1.08007 * 120.49078 * 0.24794 * 4 3 2 25 25 H 1.09000 * 109.47070 * 209.99771 * 6 5 4 26 26 H 1.09000 * 109.47034 * 330.00195 * 6 5 4 27 27 H 0.97006 * 119.99256 * 359.97438 * 9 7 6 28 28 H 1.08991 * 109.47602 * 300.00276 * 10 9 7 29 29 H 1.09000 * 109.46877 * 60.00765 * 10 9 7 30 30 H 0.97006 * 119.99849 * 180.02562 * 14 13 11 31 31 H 0.96701 * 114.00193 * 359.97438 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1360 0.0000 0.0000 3 6 2.5680 0.0006 0.0000 4 6 3.2747 0.0024 1.1884 5 7 4.6250 0.0024 1.1478 6 6 5.3892 0.0048 2.3977 7 6 5.6513 -1.4152 2.8289 8 8 5.2399 -2.3383 2.1584 9 7 6.3429 -1.6594 3.9596 10 6 6.5972 -3.0398 4.3791 11 6 7.3844 -3.0374 5.6641 12 1 7.6666 -2.1012 6.1227 13 6 7.7443 -4.2304 6.2543 14 7 7.4011 -5.3703 5.6956 15 14 8.7195 -4.2274 7.8476 16 1 7.9437 -3.5254 8.9015 17 1 8.9785 -5.6266 8.2721 18 1 10.0120 -3.5276 7.6355 19 6 5.2737 0.0002 -0.0300 20 8 6.4929 0.0008 -0.0376 21 7 4.6161 -0.0025 -1.1895 22 6 3.2942 -0.0026 -1.2214 23 8 2.6408 -0.0059 -2.4032 24 1 2.7549 -0.0007 2.1352 25 1 6.3380 0.5184 2.2426 26 1 4.8193 0.5200 3.1710 27 1 6.6722 -0.9211 4.4957 28 1 5.6483 -3.5529 4.5348 29 1 7.1665 -3.5554 3.6057 30 1 7.6540 -6.2096 6.1111 31 1 3.2236 -0.0076 -3.1748 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001467580842.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:00:05 Heat of formation + Delta-G solvation = -30.944844 kcal Electronic energy + Delta-G solvation = -20373.117841 eV Core-core repulsion = 16849.358281 eV Total energy + Delta-G solvation = -3523.759560 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 278.085 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -42.27459 -39.52335 -38.66661 -37.35312 -36.48524 -34.95328 -34.38869 -32.52672 -31.90492 -29.20675 -26.93537 -25.47721 -24.29094 -22.75664 -20.50511 -20.22043 -19.61429 -18.68525 -17.85193 -16.91322 -16.41601 -15.90547 -15.73492 -15.07779 -14.99927 -14.79956 -14.62260 -14.23484 -14.09933 -13.81772 -13.37888 -13.12766 -13.05196 -12.70083 -12.16322 -12.02891 -11.78611 -11.13740 -11.10536 -10.95064 -10.61488 -10.42611 -10.24500 -9.57875 -9.51454 -8.87212 -8.86295 -8.13734 -6.26144 -4.34503 0.15818 0.88289 1.78198 2.38420 2.78416 2.87588 2.90772 3.19473 3.24725 3.26034 3.44651 3.48902 3.73109 3.77975 4.08359 4.26417 4.55967 4.68411 4.82052 4.96146 5.09578 5.10380 5.50152 5.82788 6.64676 7.10135 7.12950 7.24472 7.35390 7.40475 7.49884 7.81230 7.83788 8.32585 8.56289 8.80417 9.32228 10.83809 Molecular weight = 278.08amu Principal moments of inertia in cm(-1) A = 0.031479 B = 0.003492 C = 0.003332 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 889.273761 B = 8015.773228 C = 8400.919937 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.411 5.411 2 C 0.280 3.720 3 C -0.200 4.200 4 C 0.286 3.714 5 N -0.491 5.491 6 C 0.065 3.935 7 C 0.485 3.515 8 O -0.543 6.543 9 N -0.700 5.700 10 C 0.250 3.750 11 C -0.548 4.548 12 H 0.064 0.936 13 C 0.065 3.935 14 N -0.884 5.884 15 Si 0.906 3.094 16 H -0.275 1.275 17 H -0.285 1.285 18 H -0.274 1.274 19 C 0.662 3.338 20 O -0.507 6.507 21 N -0.601 5.601 22 C 0.490 3.510 23 O -0.441 6.441 24 H 0.196 0.804 25 H 0.138 0.862 26 H 0.129 0.871 27 H 0.394 0.606 28 H 0.030 0.970 29 H 0.030 0.970 30 H 0.268 0.732 31 H 0.423 0.577 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.141 14.766 -8.035 18.678 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.087 5.087 2 C -0.036 4.036 3 C -0.214 4.214 4 C 0.140 3.860 5 N -0.202 5.202 6 C -0.061 4.061 7 C 0.267 3.733 8 O -0.421 6.421 9 N -0.348 5.348 10 C 0.130 3.870 11 C -0.586 4.586 12 H 0.082 0.918 13 C -0.139 4.139 14 N -0.521 5.521 15 Si 0.733 3.267 16 H -0.200 1.200 17 H -0.210 1.210 18 H -0.200 1.200 19 C 0.363 3.637 20 O -0.378 6.378 21 N -0.358 5.358 22 C 0.286 3.714 23 O -0.236 6.236 24 H 0.213 0.787 25 H 0.155 0.845 26 H 0.146 0.854 27 H 0.227 0.773 28 H 0.048 0.952 29 H 0.048 0.952 30 H 0.078 0.922 31 H 0.281 0.719 Dipole moment (debyes) X Y Z Total from point charges -9.116 13.851 -8.834 18.788 hybrid contribution 1.104 0.105 1.294 1.704 sum -8.012 13.957 -7.540 17.772 Atomic orbital electron populations 1.81283 1.11308 1.10287 1.05841 1.24386 0.91063 0.93362 0.94802 1.15133 0.86656 1.28771 0.90820 1.22679 0.83276 0.80536 0.99513 1.45981 1.05960 1.57215 1.11012 1.22183 1.00693 0.99061 0.84151 1.20322 0.80626 0.89734 0.82642 1.90748 1.52253 1.45265 1.53875 1.46409 1.53087 1.12407 1.22909 1.19196 0.96955 0.75677 0.95177 1.21144 1.36667 0.93157 1.07679 0.91766 1.24953 0.95785 0.95159 0.98020 1.69958 1.45045 0.97605 1.39476 0.86443 0.80289 0.77322 0.82687 1.20010 1.21024 1.19977 1.17317 0.88352 0.78841 0.79156 1.91045 1.10543 1.51360 1.84894 1.69725 1.06373 1.33900 1.25767 1.20062 0.87067 0.78761 0.85501 1.84985 1.37680 1.86063 1.14834 0.78670 0.84459 0.85351 0.77260 0.95225 0.95225 0.92237 0.71926 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.41 -5.08 18.54 41.84 0.78 -4.30 16 2 C 0.28 2.85 14.99 -22.47 -0.34 2.52 16 3 C -0.20 -1.82 5.77 -106.48 -0.61 -2.43 16 4 C 0.29 2.27 10.13 -16.10 -0.16 2.11 16 5 N -0.49 -5.51 2.05 -122.70 -0.25 -5.76 16 6 C 0.07 0.67 5.80 -5.19 -0.03 0.64 16 7 C 0.48 8.15 7.89 -10.99 -0.09 8.06 16 8 O -0.54 -11.74 16.43 5.56 0.09 -11.65 16 9 N -0.70 -12.72 5.55 -61.48 -0.34 -13.06 16 10 C 0.25 6.17 5.43 -5.20 -0.03 6.14 16 11 C -0.55 -14.00 9.28 -34.44 -0.32 -14.32 16 12 H 0.06 1.51 7.60 -52.49 -0.40 1.11 16 13 C 0.07 1.73 5.46 -17.82 -0.10 1.64 16 14 N -0.88 -25.20 13.29 55.43 0.74 -24.46 16 15 Si 0.91 20.03 29.54 -169.99 -5.02 15.00 16 16 H -0.27 -5.90 7.11 56.52 0.40 -5.50 16 17 H -0.28 -6.32 7.11 56.52 0.40 -5.92 16 18 H -0.27 -5.97 7.11 56.52 0.40 -5.56 16 19 C 0.66 9.86 8.32 -88.51 -0.74 9.12 16 20 O -0.51 -9.49 16.67 4.99 0.08 -9.41 16 21 N -0.60 -7.86 10.38 -16.46 -0.17 -8.04 16 22 C 0.49 4.91 7.92 -15.90 -0.13 4.78 16 23 O -0.44 -3.33 13.06 -16.80 -0.22 -3.55 16 24 H 0.20 0.70 8.06 -52.48 -0.42 0.28 16 25 H 0.14 1.35 7.36 -51.93 -0.38 0.97 16 26 H 0.13 0.61 8.02 -51.93 -0.42 0.19 16 27 H 0.39 5.75 8.32 -40.82 -0.34 5.41 16 28 H 0.03 0.80 8.14 -51.93 -0.42 0.38 16 29 H 0.03 0.83 8.14 -51.93 -0.42 0.41 16 30 H 0.27 7.20 8.31 -40.82 -0.34 6.86 16 31 H 0.42 1.45 8.98 45.56 0.41 1.86 16 LS Contribution 300.73 15.07 4.53 4.53 Total: -1.00 -38.11 300.73 -3.85 -41.96 By element: Atomic # 1 Polarization: 2.02 SS G_CDS: -1.53 Total: 0.48 kcal Atomic # 6 Polarization: 20.78 SS G_CDS: -2.54 Total: 18.24 kcal Atomic # 7 Polarization: -56.38 SS G_CDS: 0.75 Total: -55.63 kcal Atomic # 8 Polarization: -24.55 SS G_CDS: -0.04 Total: -24.60 kcal Atomic # 14 Polarization: 20.03 SS G_CDS: -5.02 Total: 15.00 kcal Total LS contribution 4.53 Total: 4.53 kcal Total: -38.11 -3.85 -41.96 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001467580842.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 11.018 kcal (2) G-P(sol) polarization free energy of solvation -38.108 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -27.090 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.854 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.963 kcal (6) G-S(sol) free energy of system = (1) + (5) -30.945 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds