Wall clock time and date at job start Tue Mar 31 2020 00:00:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13597 * 1 3 3 C 1.43201 * 179.97438 * 2 1 4 4 C 1.38267 * 120.73875 * 269.93140 * 3 2 1 5 5 N 1.35094 * 119.01406 * 179.97438 * 4 3 2 6 6 C 1.46505 * 119.71356 * 179.97438 * 5 4 3 7 7 C 1.50700 * 109.46779 * 90.00187 * 6 5 4 8 8 O 1.21282 * 120.00307 * 359.97438 * 7 6 5 9 9 N 1.34778 * 120.00155 * 179.97438 * 7 6 5 10 10 C 1.46491 * 120.00241 * 179.97438 * 9 7 6 11 11 C 1.50702 * 109.47036 * 179.97438 * 10 9 7 12 12 H 1.07999 * 119.99895 * 0.02562 * 11 10 9 13 13 C 1.37882 * 119.99907 * 180.02562 * 11 10 9 14 14 N 1.31514 * 120.00008 * 0.02562 * 13 11 10 15 15 Si 1.86801 * 119.99935 * 180.02562 * 13 11 10 16 16 H 1.48501 * 109.47306 * 60.00068 * 15 13 11 17 17 H 1.48500 * 109.47075 * 180.02562 * 15 13 11 18 18 H 1.48500 * 109.47158 * 300.00279 * 15 13 11 19 19 C 1.34457 * 120.56902 * 359.97438 * 5 4 3 20 20 O 1.21918 * 119.20065 * 179.97438 * 19 5 4 21 21 N 1.33304 * 121.59578 * 359.97438 * 19 5 4 22 22 C 1.32221 * 120.94345 * 0.02613 * 21 19 5 23 23 O 1.35032 * 120.32279 * 180.02562 * 22 21 19 24 24 H 1.08007 * 120.49078 * 0.24794 * 4 3 2 25 25 H 1.09000 * 109.47070 * 209.99771 * 6 5 4 26 26 H 1.09000 * 109.47034 * 330.00195 * 6 5 4 27 27 H 0.97006 * 119.99256 * 359.97438 * 9 7 6 28 28 H 1.08991 * 109.47602 * 300.00276 * 10 9 7 29 29 H 1.09000 * 109.46877 * 60.00765 * 10 9 7 30 30 H 0.97006 * 119.99849 * 180.02562 * 14 13 11 31 31 H 0.96701 * 114.00193 * 359.97438 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1360 0.0000 0.0000 3 6 2.5680 0.0006 0.0000 4 6 3.2747 0.0024 1.1884 5 7 4.6250 0.0024 1.1478 6 6 5.3892 0.0048 2.3977 7 6 5.6513 -1.4152 2.8289 8 8 5.2399 -2.3383 2.1584 9 7 6.3429 -1.6594 3.9596 10 6 6.5972 -3.0398 4.3791 11 6 7.3844 -3.0374 5.6641 12 1 7.6666 -2.1012 6.1227 13 6 7.7443 -4.2304 6.2543 14 7 7.4011 -5.3703 5.6956 15 14 8.7195 -4.2274 7.8476 16 1 7.9437 -3.5254 8.9015 17 1 8.9785 -5.6266 8.2721 18 1 10.0120 -3.5276 7.6355 19 6 5.2737 0.0002 -0.0300 20 8 6.4929 0.0008 -0.0376 21 7 4.6161 -0.0025 -1.1895 22 6 3.2942 -0.0026 -1.2214 23 8 2.6408 -0.0059 -2.4032 24 1 2.7549 -0.0007 2.1352 25 1 6.3380 0.5184 2.2426 26 1 4.8193 0.5200 3.1710 27 1 6.6722 -0.9211 4.4957 28 1 5.6483 -3.5529 4.5348 29 1 7.1665 -3.5554 3.6057 30 1 7.6540 -6.2096 6.1111 31 1 3.2236 -0.0076 -3.1748 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001467580842.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:00:04 Heat of formation + Delta-G solvation = -66.276694 kcal Electronic energy + Delta-G solvation = -20374.649945 eV Core-core repulsion = 16849.358281 eV Total energy + Delta-G solvation = -3525.291664 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 278.085 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -43.19099 -40.64499 -39.77912 -38.29188 -37.44303 -36.24401 -35.73765 -34.38936 -32.80449 -30.51017 -28.51238 -26.32221 -25.33677 -24.46938 -21.87245 -21.04082 -20.65581 -19.47224 -19.23911 -18.05925 -17.78643 -17.06706 -16.99235 -16.62114 -16.29028 -15.81292 -15.56488 -15.38014 -15.03456 -14.76710 -14.52379 -14.29631 -14.24725 -14.00638 -13.82671 -13.18479 -13.09081 -12.94068 -12.65938 -12.23800 -12.19968 -11.50965 -11.50381 -11.20344 -10.93142 -10.78567 -9.89180 -9.84876 -8.27924 -6.44257 -0.57177 -0.00018 0.92655 1.45965 1.49202 1.56197 1.57367 1.59706 1.97901 2.07633 2.29013 2.46457 2.65010 2.71791 3.00318 3.07939 3.39402 3.78019 3.88382 4.02269 4.08651 4.24297 4.75271 4.95467 5.11729 5.24645 5.45453 5.65342 5.84921 6.05322 6.42109 6.47417 6.66288 6.78819 6.86553 7.23954 7.40827 8.83770 Molecular weight = 278.08amu Principal moments of inertia in cm(-1) A = 0.031479 B = 0.003492 C = 0.003332 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 889.273761 B = 8015.773228 C = 8400.919937 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.447 5.447 2 C 0.306 3.694 3 C -0.202 4.202 4 C 0.303 3.697 5 N -0.495 5.495 6 C 0.081 3.919 7 C 0.481 3.519 8 O -0.597 6.597 9 N -0.695 5.695 10 C 0.267 3.733 11 C -0.555 4.555 12 H 0.089 0.911 13 C 0.004 3.996 14 N -0.932 5.932 15 Si 0.982 3.018 16 H -0.258 1.258 17 H -0.290 1.290 18 H -0.264 1.264 19 C 0.655 3.345 20 O -0.562 6.562 21 N -0.630 5.630 22 C 0.499 3.501 23 O -0.435 6.435 24 H 0.248 0.752 25 H 0.147 0.853 26 H 0.201 0.799 27 H 0.415 0.585 28 H -0.004 1.004 29 H -0.019 1.019 30 H 0.268 0.732 31 H 0.440 0.560 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.776 17.127 -6.400 20.281 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.124 5.124 2 C -0.010 4.010 3 C -0.215 4.215 4 C 0.160 3.840 5 N -0.205 5.205 6 C -0.044 4.044 7 C 0.267 3.733 8 O -0.478 6.478 9 N -0.345 5.345 10 C 0.144 3.856 11 C -0.593 4.593 12 H 0.107 0.893 13 C -0.196 4.196 14 N -0.571 5.571 15 Si 0.806 3.194 16 H -0.182 1.182 17 H -0.216 1.216 18 H -0.189 1.189 19 C 0.358 3.642 20 O -0.438 6.438 21 N -0.389 5.389 22 C 0.297 3.703 23 O -0.232 6.232 24 H 0.265 0.735 25 H 0.165 0.835 26 H 0.218 0.782 27 H 0.252 0.748 28 H 0.014 0.986 29 H -0.001 1.001 30 H 0.076 0.924 31 H 0.301 0.699 Dipole moment (debyes) X Y Z Total from point charges -9.814 16.287 -7.219 20.339 hybrid contribution 1.199 -0.631 0.640 1.498 sum -8.615 15.656 -6.579 19.043 Atomic orbital electron populations 1.81326 1.12345 1.11682 1.07010 1.24276 0.90819 0.92201 0.93685 1.15142 0.86102 1.29211 0.91095 1.23460 0.81846 0.77585 1.01151 1.45854 1.07167 1.57145 1.10296 1.22326 1.02822 0.94000 0.85235 1.21449 0.78564 0.92284 0.81008 1.90728 1.54004 1.48013 1.55105 1.46039 1.53885 1.10410 1.24189 1.18550 0.94466 0.78705 0.93915 1.21615 1.35899 0.94160 1.07586 0.89272 1.26044 0.96899 0.94740 1.01925 1.70131 1.46928 0.98452 1.41579 0.85242 0.78942 0.77129 0.78131 1.18237 1.21593 1.18894 1.17520 0.88013 0.78331 0.80371 1.90996 1.12734 1.54244 1.85857 1.69629 1.07762 1.35817 1.25643 1.20178 0.86285 0.77282 0.86565 1.84990 1.37970 1.85241 1.15038 0.73547 0.83529 0.78192 0.74783 0.98629 1.00114 0.92361 0.69882 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.45 -10.24 18.54 19.00 0.35 -9.88 16 2 C 0.31 5.50 14.99 88.33 1.32 6.82 16 3 C -0.20 -3.15 5.77 -21.07 -0.12 -3.27 16 4 C 0.30 3.70 10.13 84.20 0.85 4.55 16 5 N -0.49 -9.83 2.05 -660.40 -1.35 -11.19 16 6 C 0.08 1.37 5.80 85.63 0.50 1.87 16 7 C 0.48 15.62 7.89 87.66 0.69 16.31 16 8 O -0.60 -26.16 16.43 -3.04 -0.05 -26.21 16 9 N -0.70 -24.67 5.55 -466.81 -2.59 -27.26 16 10 C 0.27 13.54 5.43 85.64 0.46 14.00 16 11 C -0.55 -28.19 9.28 25.60 0.24 -27.95 16 12 H 0.09 3.97 7.60 -2.91 -0.02 3.95 16 13 C 0.00 0.19 5.46 84.66 0.46 0.65 16 14 N -0.93 -54.73 13.29 21.45 0.28 -54.44 16 15 Si 0.98 40.53 29.54 68.60 2.03 42.56 16 16 H -0.26 -9.90 7.11 99.48 0.71 -9.19 16 17 H -0.29 -12.12 7.11 99.48 0.71 -11.41 16 18 H -0.26 -10.40 7.11 99.48 0.71 -9.70 16 19 C 0.66 19.13 8.32 179.61 1.49 20.62 16 20 O -0.56 -21.38 16.67 -5.05 -0.08 -21.47 16 21 N -0.63 -16.17 10.38 -438.17 -4.55 -20.72 16 22 C 0.50 9.24 7.92 85.59 0.68 9.92 16 23 O -0.44 -5.89 13.06 -83.05 -1.08 -6.98 16 24 H 0.25 0.30 8.06 -2.91 -0.02 0.28 16 25 H 0.15 2.42 7.36 -2.39 -0.02 2.41 16 26 H 0.20 0.54 8.02 -2.39 -0.02 0.52 16 27 H 0.42 11.06 8.32 -92.70 -0.77 10.29 16 28 H 0.00 -0.24 8.14 -2.39 -0.02 -0.26 16 29 H -0.02 -1.14 8.14 -2.39 -0.02 -1.16 16 30 H 0.27 14.80 8.31 -92.70 -0.77 14.03 16 31 H 0.44 2.46 8.98 -74.06 -0.67 1.79 16 Total: -1.00 -89.82 300.73 -0.67 -90.50 By element: Atomic # 1 Polarization: 1.77 SS G_CDS: -0.21 Total: 1.56 kcal Atomic # 6 Polarization: 36.94 SS G_CDS: 6.58 Total: 43.52 kcal Atomic # 7 Polarization: -115.63 SS G_CDS: -7.86 Total: -123.49 kcal Atomic # 8 Polarization: -53.43 SS G_CDS: -1.22 Total: -54.65 kcal Atomic # 14 Polarization: 40.53 SS G_CDS: 2.03 Total: 42.56 kcal Total: -89.82 -0.67 -90.50 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001467580842.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 24.220 kcal (2) G-P(sol) polarization free energy of solvation -89.822 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -65.602 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.674 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -90.497 kcal (6) G-S(sol) free energy of system = (1) + (5) -66.277 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds