Wall clock time and date at job start Tue Mar 31 2020 00:40:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31513 * 1 3 3 Si 1.86805 * 119.99380 * 2 1 4 4 H 1.48505 * 109.46932 * 180.02562 * 3 2 1 5 5 H 1.48501 * 109.47108 * 299.99674 * 3 2 1 6 6 H 1.48503 * 109.47396 * 60.00392 * 3 2 1 7 7 C 1.37871 * 120.00732 * 180.02562 * 2 1 3 8 8 H 1.07995 * 120.00743 * 180.02562 * 7 2 1 9 9 C 1.50700 * 119.99681 * 359.97438 * 7 2 1 10 10 H 1.09004 * 109.47134 * 60.00600 * 9 7 2 11 11 O 1.45206 * 109.47195 * 179.97438 * 9 7 2 12 12 C 1.34223 * 116.99944 * 210.00054 * 11 9 7 13 13 O 1.20832 * 120.00581 * 0.02562 * 12 11 9 14 14 C 1.50703 * 119.99748 * 180.02562 * 12 11 9 15 15 H 1.08993 * 115.50982 * 325.37230 * 14 12 11 16 16 C 1.52999 * 117.38751 * 110.67242 * 14 12 11 17 17 H 1.09007 * 119.80565 * 355.38580 * 16 14 12 18 18 C 1.54476 * 118.06719 * 198.10624 * 16 14 12 19 19 O 1.44427 * 104.80245 * 321.12680 * 18 16 14 20 20 C 1.45924 * 105.86393 * 319.97330 * 19 18 16 21 21 C 1.53005 * 117.43103 * 180.02562 * 14 12 11 22 22 H 1.09002 * 119.80837 * 4.68902 * 21 14 12 23 23 C 1.50699 * 109.47364 * 300.00393 * 9 7 2 24 24 C 1.34515 * 125.78842 * 99.99941 * 23 9 7 25 25 C 1.41385 * 106.83557 * 179.97438 * 24 23 9 26 26 C 1.34518 * 106.84482 * 359.97438 * 25 24 23 27 27 O 1.34305 * 125.78643 * 279.68974 * 23 9 7 28 28 H 0.96995 * 120.00719 * 359.97438 * 1 2 3 29 29 H 1.08989 * 110.37565 * 79.95726 * 18 16 14 30 30 H 1.09001 * 110.37151 * 202.18638 * 18 16 14 31 31 H 1.09002 * 110.59091 * 280.94452 * 20 19 18 32 32 H 1.09001 * 110.84617 * 158.13126 * 20 19 18 33 33 H 1.07996 * 126.58606 * 0.03423 * 24 23 9 34 34 H 1.08005 * 126.57702 * 179.97438 * 25 24 23 35 35 H 1.07995 * 125.78884 * 179.97438 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2490 1.6179 0.0000 4 1 3.7090 1.3466 -0.0006 5 1 1.8902 2.3965 -1.2125 6 1 1.8903 2.3966 1.2125 7 6 2.0046 -1.1939 -0.0005 8 1 3.0846 -1.1939 -0.0001 9 6 1.2512 -2.4991 -0.0005 10 1 0.6243 -2.5567 -0.8904 11 8 2.1949 -3.6027 -0.0018 12 6 1.8032 -4.7386 -0.5999 13 8 0.7083 -4.8085 -1.1063 14 6 2.7292 -5.9270 -0.6401 15 1 3.7896 -5.6929 -0.7326 16 6 2.3472 -7.1456 0.2025 17 1 1.4767 -7.1005 0.8571 18 6 3.4471 -8.1822 0.5217 19 8 4.2265 -8.2783 -0.6905 20 6 3.2647 -8.2397 -1.7872 21 6 2.2232 -7.1915 -1.3373 22 1 1.2592 -7.1810 -1.8459 23 6 0.3852 -2.5792 1.2302 24 6 -0.9349 -2.3262 1.2809 25 6 -1.3381 -2.5220 2.6218 26 6 -0.2404 -2.8836 3.3101 27 8 0.7996 -2.9211 2.4611 28 1 -0.4851 0.8399 0.0004 29 1 4.0692 -7.8339 1.3461 30 1 3.0007 -9.1464 0.7651 31 1 2.7920 -9.2133 -1.9169 32 1 3.7450 -7.9237 -2.7133 33 1 -1.5660 -2.0312 0.4557 34 1 -2.3361 -2.4040 3.0176 35 1 -0.2024 -3.1084 4.3658 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001520418622.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:40:10 Heat of formation + Delta-G solvation = -76.631820 kcal Electronic energy + Delta-G solvation = -21616.309359 eV Core-core repulsion = 18161.816255 eV Total energy + Delta-G solvation = -3454.493103 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 278.103 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -41.38809 -40.65006 -39.09474 -35.90881 -34.27126 -33.29701 -31.74323 -29.75126 -28.87295 -27.07363 -26.34700 -23.48539 -22.05576 -20.76232 -20.59965 -19.79533 -19.21294 -17.70456 -16.86330 -16.67427 -16.04592 -15.74221 -15.43576 -15.05556 -14.85326 -14.68055 -14.45059 -13.53998 -13.14357 -12.75845 -12.72337 -12.05516 -11.86304 -11.75442 -11.72923 -11.60201 -11.28410 -11.16900 -11.00069 -10.44178 -10.36531 -10.30966 -10.16148 -9.88510 -9.67338 -9.42271 -8.85479 -8.68099 -7.29462 -6.24310 -4.42093 2.54842 2.80932 3.15092 3.20210 3.27261 3.33648 3.57751 3.80214 3.93884 4.15489 4.25047 4.55065 4.61999 4.74836 4.78124 5.04737 5.22714 5.32081 5.44166 5.52949 5.57841 5.61561 5.80092 5.82163 6.02142 6.05686 6.33321 6.52771 6.66358 6.94665 7.10449 7.19329 7.33566 7.65656 7.67247 7.81519 8.31145 8.47380 8.74994 9.24992 10.74790 Molecular weight = 278.10amu Principal moments of inertia in cm(-1) A = 0.020181 B = 0.005271 C = 0.004618 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1387.082263 B = 5310.746079 C = 6062.055280 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.868 5.868 2 C 0.069 3.931 3 Si 0.914 3.086 4 H -0.268 1.268 5 H -0.279 1.279 6 H -0.281 1.281 7 C -0.531 4.531 8 H 0.079 0.921 9 C 0.297 3.703 10 H 0.079 0.921 11 O -0.341 6.341 12 C 0.486 3.514 13 O -0.514 6.514 14 C -0.116 4.116 15 H 0.135 0.865 16 C -0.172 4.172 17 H 0.130 0.870 18 C 0.075 3.925 19 O -0.378 6.378 20 C 0.074 3.926 21 C -0.171 4.171 22 H 0.137 0.863 23 C 0.026 3.974 24 C -0.179 4.179 25 C -0.217 4.217 26 C -0.088 4.088 27 O -0.177 6.177 28 H 0.268 0.732 29 H 0.100 0.900 30 H 0.074 0.926 31 H 0.076 0.924 32 H 0.100 0.900 33 H 0.141 0.859 34 H 0.131 0.869 35 H 0.185 0.815 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.788 -12.850 0.968 13.185 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.502 5.502 2 C -0.136 4.136 3 Si 0.741 3.259 4 H -0.192 1.192 5 H -0.205 1.205 6 H -0.206 1.206 7 C -0.568 4.568 8 H 0.097 0.903 9 C 0.244 3.756 10 H 0.097 0.903 11 O -0.256 6.256 12 C 0.329 3.671 13 O -0.403 6.403 14 C -0.135 4.135 15 H 0.153 0.847 16 C -0.190 4.190 17 H 0.148 0.852 18 C -0.001 4.001 19 O -0.297 6.297 20 C -0.002 4.002 21 C -0.189 4.189 22 H 0.155 0.845 23 C -0.025 4.025 24 C -0.198 4.198 25 C -0.237 4.237 26 C -0.156 4.156 27 O -0.073 6.073 28 H 0.078 0.922 29 H 0.118 0.882 30 H 0.092 0.908 31 H 0.094 0.906 32 H 0.118 0.882 33 H 0.159 0.841 34 H 0.149 0.851 35 H 0.202 0.798 Dipole moment (debyes) X Y Z Total from point charges 2.812 -12.797 0.882 13.132 hybrid contribution -0.514 1.328 0.275 1.450 sum 2.298 -11.470 1.157 11.755 Atomic orbital electron populations 1.70036 1.05935 1.27619 1.46657 1.24947 0.95142 0.99590 0.93960 0.86170 0.80054 0.81890 0.77820 1.19221 1.20516 1.20643 1.20934 0.94238 0.87476 1.54140 0.90295 1.19236 0.85721 0.81743 0.88879 0.90337 1.86544 1.48378 1.21760 1.68965 1.22170 0.85471 0.84294 0.75162 1.90615 1.22400 1.83440 1.43859 1.21554 1.00630 0.86511 1.04798 0.84688 1.24064 1.02426 0.97369 0.95147 0.85169 1.22934 0.92059 0.96478 0.88648 1.89354 1.30022 1.95072 1.15265 1.23230 0.89014 0.96723 0.91252 1.24080 1.02470 0.96542 0.95842 0.84538 1.23523 0.94111 1.00259 0.84616 1.21216 0.94785 1.06943 0.96863 1.21694 0.98930 1.07975 0.95106 1.23613 0.86107 1.10237 0.95605 1.83996 1.36680 1.68419 1.18198 0.92178 0.88184 0.90825 0.90557 0.88165 0.84114 0.85116 0.79849 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.87 -23.97 10.95 55.43 0.61 -23.36 16 2 C 0.07 1.88 5.30 -17.82 -0.09 1.78 16 3 Si 0.91 20.90 29.54 -169.99 -5.02 15.88 16 4 H -0.27 -6.03 7.11 56.52 0.40 -5.63 16 5 H -0.28 -6.25 7.11 56.52 0.40 -5.85 16 6 H -0.28 -6.41 7.11 56.52 0.40 -6.01 16 7 C -0.53 -14.71 8.89 -34.44 -0.31 -15.01 16 8 H 0.08 2.16 7.81 -52.49 -0.41 1.75 16 9 C 0.30 7.91 2.42 -29.04 -0.07 7.84 16 10 H 0.08 2.23 7.15 -51.93 -0.37 1.85 16 11 O -0.34 -8.18 9.85 -41.31 -0.41 -8.59 16 12 C 0.49 10.18 7.70 36.01 0.28 10.46 16 13 O -0.51 -11.83 15.56 -18.75 -0.29 -12.12 16 14 C -0.12 -1.83 5.66 -91.77 -0.52 -2.35 16 15 H 0.14 2.01 8.06 -51.93 -0.42 1.60 16 16 C -0.17 -2.22 6.95 -89.03 -0.62 -2.84 16 17 H 0.13 1.70 8.14 -51.92 -0.42 1.28 16 18 C 0.08 0.79 7.57 37.93 0.29 1.08 16 19 O -0.38 -4.58 11.33 -35.23 -0.40 -4.98 16 20 C 0.07 0.76 7.67 37.93 0.29 1.05 16 21 C -0.17 -2.18 6.64 -89.03 -0.59 -2.78 16 22 H 0.14 1.79 7.82 -51.93 -0.41 1.39 16 23 C 0.03 0.67 5.53 -35.63 -0.20 0.48 16 24 C -0.18 -4.44 9.17 -39.70 -0.36 -4.81 16 25 C -0.22 -4.64 10.91 -39.70 -0.43 -5.07 16 26 C -0.09 -1.81 12.09 29.42 0.36 -1.45 16 27 O -0.18 -4.33 10.65 4.37 0.05 -4.29 16 28 H 0.27 7.01 8.31 -40.82 -0.34 6.67 16 29 H 0.10 0.96 8.14 -51.94 -0.42 0.54 16 30 H 0.07 0.62 8.14 -51.93 -0.42 0.19 16 31 H 0.08 0.62 8.14 -51.93 -0.42 0.19 16 32 H 0.10 0.91 8.14 -51.93 -0.42 0.48 16 33 H 0.14 3.58 7.87 -52.49 -0.41 3.17 16 34 H 0.13 2.35 8.06 -52.48 -0.42 1.93 16 35 H 0.18 2.83 8.06 -52.49 -0.42 2.41 16 LS Contribution 309.53 15.07 4.66 4.66 Total: -1.00 -31.54 309.53 -6.90 -38.44 By element: Atomic # 1 Polarization: 10.08 SS G_CDS: -4.11 Total: 5.97 kcal Atomic # 6 Polarization: -9.63 SS G_CDS: -1.98 Total: -11.62 kcal Atomic # 7 Polarization: -23.97 SS G_CDS: 0.61 Total: -23.36 kcal Atomic # 8 Polarization: -28.92 SS G_CDS: -1.05 Total: -29.97 kcal Atomic # 14 Polarization: 20.90 SS G_CDS: -5.02 Total: 15.88 kcal Total LS contribution 4.66 Total: 4.66 kcal Total: -31.54 -6.90 -38.44 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001520418622.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -38.196 kcal (2) G-P(sol) polarization free energy of solvation -31.538 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -69.734 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.898 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.436 kcal (6) G-S(sol) free energy of system = (1) + (5) -76.632 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds