Wall clock time and date at job start Tue Mar 31 2020 00:40:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31513 * 1 3 3 Si 1.86805 * 119.99380 * 2 1 4 4 H 1.48505 * 109.46932 * 180.02562 * 3 2 1 5 5 H 1.48501 * 109.47108 * 299.99674 * 3 2 1 6 6 H 1.48503 * 109.47396 * 60.00392 * 3 2 1 7 7 C 1.37871 * 120.00732 * 180.02562 * 2 1 3 8 8 H 1.07995 * 120.00743 * 180.02562 * 7 2 1 9 9 C 1.50700 * 119.99681 * 359.97438 * 7 2 1 10 10 H 1.09004 * 109.47134 * 60.00600 * 9 7 2 11 11 O 1.45206 * 109.47195 * 179.97438 * 9 7 2 12 12 C 1.34223 * 116.99944 * 210.00054 * 11 9 7 13 13 O 1.20832 * 120.00581 * 0.02562 * 12 11 9 14 14 C 1.50703 * 119.99748 * 180.02562 * 12 11 9 15 15 H 1.08993 * 115.50982 * 325.37230 * 14 12 11 16 16 C 1.52999 * 117.38751 * 110.67242 * 14 12 11 17 17 H 1.09007 * 119.80565 * 355.38580 * 16 14 12 18 18 C 1.54476 * 118.06719 * 198.10624 * 16 14 12 19 19 O 1.44427 * 104.80245 * 321.12680 * 18 16 14 20 20 C 1.45924 * 105.86393 * 319.97330 * 19 18 16 21 21 C 1.53005 * 117.43103 * 180.02562 * 14 12 11 22 22 H 1.09002 * 119.80837 * 4.68902 * 21 14 12 23 23 C 1.50699 * 109.47364 * 300.00393 * 9 7 2 24 24 C 1.34515 * 125.78842 * 99.99941 * 23 9 7 25 25 C 1.41385 * 106.83557 * 179.97438 * 24 23 9 26 26 C 1.34518 * 106.84482 * 359.97438 * 25 24 23 27 27 O 1.34305 * 125.78643 * 279.68974 * 23 9 7 28 28 H 0.96995 * 120.00719 * 359.97438 * 1 2 3 29 29 H 1.08989 * 110.37565 * 79.95726 * 18 16 14 30 30 H 1.09001 * 110.37151 * 202.18638 * 18 16 14 31 31 H 1.09002 * 110.59091 * 280.94452 * 20 19 18 32 32 H 1.09001 * 110.84617 * 158.13126 * 20 19 18 33 33 H 1.07996 * 126.58606 * 0.03423 * 24 23 9 34 34 H 1.08005 * 126.57702 * 179.97438 * 25 24 23 35 35 H 1.07995 * 125.78884 * 179.97438 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2490 1.6179 0.0000 4 1 3.7090 1.3466 -0.0006 5 1 1.8902 2.3965 -1.2125 6 1 1.8903 2.3966 1.2125 7 6 2.0046 -1.1939 -0.0005 8 1 3.0846 -1.1939 -0.0001 9 6 1.2512 -2.4991 -0.0005 10 1 0.6243 -2.5567 -0.8904 11 8 2.1949 -3.6027 -0.0018 12 6 1.8032 -4.7386 -0.5999 13 8 0.7083 -4.8085 -1.1063 14 6 2.7292 -5.9270 -0.6401 15 1 3.7896 -5.6929 -0.7326 16 6 2.3472 -7.1456 0.2025 17 1 1.4767 -7.1005 0.8571 18 6 3.4471 -8.1822 0.5217 19 8 4.2265 -8.2783 -0.6905 20 6 3.2647 -8.2397 -1.7872 21 6 2.2232 -7.1915 -1.3373 22 1 1.2592 -7.1810 -1.8459 23 6 0.3852 -2.5792 1.2302 24 6 -0.9349 -2.3262 1.2809 25 6 -1.3381 -2.5220 2.6218 26 6 -0.2404 -2.8836 3.3101 27 8 0.7996 -2.9211 2.4611 28 1 -0.4851 0.8399 0.0004 29 1 4.0692 -7.8339 1.3461 30 1 3.0007 -9.1464 0.7651 31 1 2.7920 -9.2133 -1.9169 32 1 3.7450 -7.9237 -2.7133 33 1 -1.5660 -2.0312 0.4557 34 1 -2.3361 -2.4040 3.0176 35 1 -0.2024 -3.1084 4.3658 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001520418622.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:40:10 Heat of formation + Delta-G solvation = -95.996811 kcal Electronic energy + Delta-G solvation = -21617.149088 eV Core-core repulsion = 18161.816255 eV Total energy + Delta-G solvation = -3455.332832 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 278.103 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -43.21823 -41.92059 -40.55972 -37.67851 -35.42165 -35.28821 -33.58297 -31.66982 -29.71304 -28.77233 -27.79968 -25.22691 -23.53142 -22.39653 -21.76585 -21.42957 -20.82274 -19.29287 -18.69624 -18.46465 -17.50046 -16.98282 -16.85263 -16.73142 -16.39072 -16.01678 -15.93250 -14.91544 -14.89057 -14.46554 -13.83484 -13.56803 -13.54665 -13.51544 -13.24162 -13.07994 -12.85884 -12.77785 -12.62832 -12.24535 -12.09947 -11.63195 -11.48141 -11.38448 -11.20256 -10.84789 -10.67474 -10.55327 -9.15686 -8.27994 -6.56932 0.99333 1.04870 1.37381 1.39018 1.51443 1.69415 2.04634 2.32369 2.36213 2.44303 2.91064 2.98296 3.48485 3.49142 3.66307 3.77981 4.00340 4.17555 4.25574 4.36896 4.51268 4.52240 4.61119 4.70701 4.75458 4.81167 4.83328 4.92118 5.11584 5.27613 5.36747 5.41400 5.62426 5.69931 5.77099 5.90310 6.44838 6.52213 6.82787 7.15080 8.69533 Molecular weight = 278.10amu Principal moments of inertia in cm(-1) A = 0.020181 B = 0.005271 C = 0.004618 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1387.082263 B = 5310.746079 C = 6062.055280 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.891 5.891 2 C 0.025 3.975 3 Si 0.982 3.018 4 H -0.263 1.263 5 H -0.269 1.269 6 H -0.275 1.275 7 C -0.559 4.559 8 H 0.073 0.927 9 C 0.300 3.700 10 H 0.043 0.957 11 O -0.354 6.354 12 C 0.481 3.519 13 O -0.543 6.543 14 C -0.141 4.141 15 H 0.142 0.858 16 C -0.162 4.162 17 H 0.127 0.873 18 C 0.081 3.919 19 O -0.395 6.395 20 C 0.080 3.920 21 C -0.159 4.159 22 H 0.130 0.870 23 C -0.004 4.004 24 C -0.192 4.192 25 C -0.227 4.227 26 C -0.069 4.069 27 O -0.195 6.195 28 H 0.272 0.728 29 H 0.109 0.891 30 H 0.105 0.895 31 H 0.107 0.893 32 H 0.112 0.888 33 H 0.122 0.878 34 H 0.167 0.833 35 H 0.241 0.759 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.424 -14.042 2.441 14.658 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.525 5.525 2 C -0.178 4.178 3 Si 0.805 3.195 4 H -0.187 1.187 5 H -0.194 1.194 6 H -0.201 1.201 7 C -0.595 4.595 8 H 0.091 0.909 9 C 0.246 3.754 10 H 0.060 0.940 11 O -0.270 6.270 12 C 0.326 3.674 13 O -0.435 6.435 14 C -0.160 4.160 15 H 0.159 0.841 16 C -0.180 4.180 17 H 0.145 0.855 18 C 0.005 3.995 19 O -0.314 6.314 20 C 0.004 3.996 21 C -0.177 4.177 22 H 0.148 0.852 23 C -0.055 4.055 24 C -0.212 4.212 25 C -0.246 4.246 26 C -0.135 4.135 27 O -0.092 6.092 28 H 0.081 0.919 29 H 0.127 0.873 30 H 0.123 0.877 31 H 0.125 0.875 32 H 0.130 0.870 33 H 0.140 0.860 34 H 0.184 0.816 35 H 0.257 0.743 Dipole moment (debyes) X Y Z Total from point charges 3.450 -14.013 2.347 14.621 hybrid contribution -0.791 1.616 -0.162 1.806 sum 2.660 -12.397 2.186 12.866 Atomic orbital electron populations 1.70160 1.07205 1.28532 1.46627 1.25832 0.96063 1.02799 0.93108 0.85147 0.78868 0.77339 0.78174 1.18669 1.19442 1.20075 1.21173 0.94141 0.88735 1.55476 0.90903 1.18808 0.85653 0.82527 0.88379 0.93964 1.86529 1.48141 1.22485 1.69819 1.23191 0.86011 0.84485 0.73754 1.90579 1.24079 1.83775 1.45021 1.21557 0.99570 0.85589 1.09246 0.84076 1.24244 1.03117 0.95288 0.95385 0.85536 1.23106 0.91257 0.96764 0.88423 1.89345 1.30904 1.95100 1.16063 1.23421 0.88119 0.96973 0.91100 1.24229 1.02862 0.94536 0.96103 0.85188 1.23261 0.94421 1.02642 0.85177 1.21299 0.94528 1.06996 0.98387 1.22046 1.01092 1.08130 0.93296 1.24712 0.84569 1.07072 0.97148 1.83967 1.38313 1.68834 1.18084 0.91930 0.87314 0.87734 0.87462 0.87022 0.85988 0.81552 0.74257 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -50.69 10.95 21.44 0.23 -50.46 16 2 C 0.03 1.40 5.30 84.65 0.45 1.85 16 3 Si 0.98 43.32 29.54 68.60 2.03 45.34 16 4 H -0.26 -11.26 7.11 99.48 0.71 -10.55 16 5 H -0.27 -11.36 7.11 99.48 0.71 -10.66 16 6 H -0.28 -11.85 7.11 99.48 0.71 -11.14 16 7 C -0.56 -32.30 8.89 25.60 0.23 -32.08 16 8 H 0.07 4.16 7.81 -2.91 -0.02 4.13 16 9 C 0.30 16.95 2.42 29.10 0.07 17.02 16 10 H 0.04 2.63 7.15 -2.38 -0.02 2.61 16 11 O -0.35 -18.00 9.85 -49.38 -0.49 -18.49 16 12 C 0.48 21.23 7.70 71.24 0.55 21.78 16 13 O -0.54 -26.64 15.56 21.94 0.34 -26.30 16 14 C -0.14 -4.50 5.66 -11.54 -0.07 -4.56 16 15 H 0.14 4.27 8.06 -2.39 -0.02 4.25 16 16 C -0.16 -4.00 6.95 -9.76 -0.07 -4.07 16 17 H 0.13 3.22 8.14 -2.38 -0.02 3.20 16 18 C 0.08 1.47 7.57 72.48 0.55 2.01 16 19 O -0.39 -8.46 11.33 -148.98 -1.69 -10.15 16 20 C 0.08 1.41 7.67 72.48 0.56 1.96 16 21 C -0.16 -3.91 6.64 -9.77 -0.06 -3.97 16 22 H 0.13 3.39 7.82 -2.39 -0.02 3.37 16 23 C 0.00 -0.24 5.53 24.83 0.14 -0.10 16 24 C -0.19 -9.85 9.17 22.19 0.20 -9.64 16 25 C -0.23 -9.34 10.91 22.19 0.24 -9.10 16 26 C -0.07 -2.66 12.09 66.97 0.81 -1.85 16 27 O -0.19 -9.57 10.65 -1.24 -0.01 -9.58 16 28 H 0.27 14.47 8.31 -92.71 -0.77 13.70 16 29 H 0.11 1.80 8.14 -2.39 -0.02 1.78 16 30 H 0.10 1.32 8.14 -2.39 -0.02 1.30 16 31 H 0.11 1.31 8.14 -2.39 -0.02 1.29 16 32 H 0.11 1.74 8.14 -2.39 -0.02 1.72 16 33 H 0.12 6.57 7.87 -2.91 -0.02 6.55 16 34 H 0.17 5.51 8.06 -2.91 -0.02 5.49 16 35 H 0.24 6.22 8.06 -2.91 -0.02 6.20 16 Total: -1.00 -72.26 309.53 5.11 -67.14 By element: Atomic # 1 Polarization: 22.13 SS G_CDS: 1.11 Total: 23.23 kcal Atomic # 6 Polarization: -24.34 SS G_CDS: 3.59 Total: -20.74 kcal Atomic # 7 Polarization: -50.69 SS G_CDS: 0.23 Total: -50.46 kcal Atomic # 8 Polarization: -62.67 SS G_CDS: -1.85 Total: -64.52 kcal Atomic # 14 Polarization: 43.32 SS G_CDS: 2.03 Total: 45.34 kcal Total: -72.26 5.11 -67.14 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001520418622.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -28.853 kcal (2) G-P(sol) polarization free energy of solvation -72.258 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -101.111 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.114 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.144 kcal (6) G-S(sol) free energy of system = (1) + (5) -95.997 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds