Wall clock time and date at job start Tue Mar 31 2020 00:42:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13602 * 1 3 3 C 1.43200 * 179.97438 * 2 1 4 4 C 1.36635 * 125.45492 * 51.60711 * 3 2 1 5 5 C 1.37618 * 113.26559 * 179.97438 * 4 3 2 6 6 C 1.33717 * 115.09620 * 359.97438 * 5 4 3 7 7 C 1.50696 * 124.50749 * 179.97438 * 6 5 4 8 8 N 1.46501 * 109.46879 * 90.03228 * 7 6 5 9 9 C 1.34785 * 119.99708 * 179.97438 * 8 7 6 10 10 O 1.21280 * 119.99960 * 359.97438 * 9 8 7 11 11 C 1.50702 * 119.99681 * 179.97438 * 9 8 7 12 12 C 1.52997 * 109.46788 * 179.97438 * 11 9 8 13 13 C 1.53002 * 109.47057 * 180.02562 * 12 11 9 14 14 C 1.50696 * 109.47122 * 180.02562 * 13 12 11 15 15 H 1.08002 * 120.00355 * 359.97438 * 14 13 12 16 16 C 1.37885 * 119.99976 * 180.02562 * 14 13 12 17 17 N 1.31513 * 119.99537 * 359.97438 * 16 14 13 18 18 Si 1.86798 * 119.99826 * 179.97438 * 16 14 13 19 19 H 1.48491 * 109.47390 * 359.97438 * 18 16 14 20 20 H 1.48498 * 109.47034 * 119.99937 * 18 16 14 21 21 H 1.48510 * 109.46840 * 239.99438 * 18 16 14 22 22 S 1.70609 * 110.97575 * 0.02562 * 6 5 4 23 23 H 1.07992 * 123.36750 * 359.73244 * 4 3 2 24 24 H 1.08000 * 122.44759 * 180.02562 * 5 4 3 25 25 H 1.09006 * 109.46869 * 210.02426 * 7 6 5 26 26 H 1.08994 * 109.47554 * 330.02643 * 7 6 5 27 27 H 0.96997 * 120.00382 * 359.97438 * 8 7 6 28 28 H 1.08999 * 109.47140 * 300.00048 * 11 9 8 29 29 H 1.09003 * 109.46988 * 59.99925 * 11 9 8 30 30 H 1.08999 * 109.47563 * 300.00087 * 12 11 9 31 31 H 1.09003 * 109.47174 * 60.00337 * 12 11 9 32 32 H 1.09006 * 109.46821 * 299.99983 * 13 12 11 33 33 H 1.08994 * 109.47157 * 59.99927 * 13 12 11 34 34 H 0.97005 * 119.99475 * 180.02562 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1360 0.0000 0.0000 3 6 2.5680 0.0006 0.0000 4 6 3.3609 -0.6902 -0.8723 5 6 4.7060 -0.5087 -0.6449 6 6 5.0043 0.3017 0.3760 7 6 6.4053 0.6470 0.8107 8 7 6.8587 1.8412 0.0934 9 6 8.0903 2.3382 0.3230 10 8 8.8230 1.7970 1.1237 11 6 8.5569 3.5663 -0.4153 12 6 9.9788 3.9177 0.0271 13 6 10.4523 5.1650 -0.7219 14 6 11.8530 5.5107 -0.2867 15 1 12.3552 4.9021 0.4507 16 6 12.4932 6.6049 -0.8292 17 7 11.8816 7.3463 -1.7268 18 14 14.2292 7.0338 -0.2891 19 1 14.6896 6.0508 0.7241 20 1 15.1366 6.9962 -1.4640 21 1 14.2412 8.3961 0.3022 22 16 3.5877 0.8914 1.1217 23 1 2.9711 -1.3191 -1.6590 24 1 5.4650 -0.9853 -1.2476 25 1 6.4153 0.8417 1.8832 26 1 7.0711 -0.1863 0.5864 27 1 6.2725 2.2743 -0.5467 28 1 8.5474 3.3712 -1.4876 29 1 7.8908 4.3996 -0.1917 30 1 9.9880 4.1130 1.0994 31 1 10.6452 3.0845 -0.1962 32 1 10.4431 4.9701 -1.7944 33 1 9.7859 5.9980 -0.4983 34 1 12.3321 8.1158 -2.1087 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001536702423.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:42:30 Heat of formation + Delta-G solvation = 4.406243 kcal Electronic energy + Delta-G solvation = -17264.711327 eV Core-core repulsion = 14288.777920 eV Total energy + Delta-G solvation = -2975.933407 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 278.083 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -39.72353 -38.72590 -36.93481 -34.99584 -34.17594 -32.11773 -31.11206 -28.30776 -26.90117 -24.33863 -23.29719 -21.45005 -20.74274 -19.90756 -18.83823 -17.04477 -16.81035 -16.21270 -15.94205 -15.54704 -15.01050 -14.62273 -14.42493 -14.16298 -13.90822 -13.52850 -13.31574 -13.17512 -12.85205 -12.52618 -12.29055 -12.25396 -11.81493 -11.43377 -11.34491 -10.83315 -10.62655 -10.52689 -9.88539 -9.70293 -9.41745 -9.22388 -9.20701 -9.12044 -8.99691 -8.33267 -5.98742 -4.00008 -0.16181 0.61710 1.28079 1.78192 2.42109 2.81754 2.82631 3.27833 3.33036 3.40502 3.41256 3.46166 4.08427 4.48621 4.62023 4.80785 5.05314 5.07405 5.36508 5.37530 5.40934 5.54136 5.68147 5.68294 5.75919 6.20079 6.28317 6.70339 6.90685 6.94406 7.14303 7.45862 7.70064 7.82316 8.02022 8.33443 8.45946 9.07407 9.64062 11.12760 Molecular weight = 278.08amu Principal moments of inertia in cm(-1) A = 0.046288 B = 0.002386 C = 0.002337 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 604.766559 B =11732.585519 C =11976.309131 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.404 5.404 2 C 0.281 3.719 3 C -0.170 4.170 4 C -0.058 4.058 5 C -0.127 4.127 6 C -0.216 4.216 7 C 0.188 3.812 8 N -0.739 5.739 9 C 0.515 3.485 10 O -0.535 6.535 11 C -0.138 4.138 12 C -0.095 4.095 13 C 0.020 3.980 14 C -0.517 4.517 15 H 0.057 0.943 16 C 0.055 3.945 17 N -0.897 5.897 18 Si 0.892 3.108 19 H -0.272 1.272 20 H -0.284 1.284 21 H -0.284 1.284 22 S 0.272 5.728 23 H 0.155 0.845 24 H 0.153 0.847 25 H 0.080 0.920 26 H 0.090 0.910 27 H 0.402 0.598 28 H 0.090 0.910 29 H 0.089 0.911 30 H 0.054 0.946 31 H 0.055 0.945 32 H 0.016 0.984 33 H 0.016 0.984 34 H 0.259 0.741 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.456 -15.868 1.988 24.420 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.082 5.082 2 C -0.035 4.035 3 C -0.292 4.292 4 C -0.095 4.095 5 C -0.158 4.158 6 C -0.336 4.336 7 C 0.063 3.937 8 N -0.394 5.394 9 C 0.303 3.697 10 O -0.410 6.410 11 C -0.178 4.178 12 C -0.133 4.133 13 C -0.017 4.017 14 C -0.555 4.555 15 H 0.075 0.925 16 C -0.146 4.146 17 N -0.537 5.537 18 Si 0.720 3.280 19 H -0.197 1.197 20 H -0.211 1.211 21 H -0.211 1.211 22 S 0.541 5.459 23 H 0.173 0.827 24 H 0.171 0.829 25 H 0.098 0.902 26 H 0.108 0.892 27 H 0.237 0.763 28 H 0.108 0.892 29 H 0.108 0.892 30 H 0.073 0.927 31 H 0.073 0.927 32 H 0.034 0.966 33 H 0.034 0.966 34 H 0.069 0.931 Dipole moment (debyes) X Y Z Total from point charges -19.896 -15.121 3.741 25.268 hybrid contribution 1.322 -0.501 -1.412 1.998 sum -18.574 -15.621 2.329 24.381 Atomic orbital electron populations 1.81328 1.11184 1.08175 1.07513 1.24300 0.90943 0.94010 0.94205 1.20491 0.89377 1.11934 1.07349 1.20753 0.92117 0.98222 0.98385 1.20021 0.96377 1.00738 0.98714 1.24369 1.01052 1.05310 1.02914 1.19655 0.87358 0.89627 0.97062 1.46239 1.17454 1.29858 1.45868 1.21331 0.80075 0.85920 0.82355 1.90694 1.54184 1.60877 1.35257 1.21858 1.01225 0.94070 1.00613 1.21456 0.90969 1.00276 1.00645 1.19140 0.96019 0.91291 0.95297 1.21309 0.99795 1.11129 1.23315 0.92511 1.25031 0.98052 0.96366 0.95152 1.69973 1.37444 1.17517 1.28778 0.86537 0.84730 0.78251 0.78517 1.19679 1.21054 1.21056 1.83453 0.92104 1.42089 1.28281 0.82733 0.82918 0.90197 0.89188 0.76330 0.89204 0.89226 0.92670 0.92659 0.96588 0.96587 0.93122 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.40 -4.39 18.54 41.84 0.78 -3.61 16 2 C 0.28 2.39 15.83 -22.47 -0.36 2.03 16 3 C -0.17 -1.08 6.32 -38.24 -0.24 -1.32 16 4 C -0.06 -0.29 10.24 -40.39 -0.41 -0.70 16 5 C -0.13 -0.64 10.00 -41.39 -0.41 -1.06 16 6 C -0.22 -1.31 5.64 -35.90 -0.20 -1.51 16 7 C 0.19 1.54 6.10 -5.20 -0.03 1.50 16 8 N -0.74 -7.18 5.55 -61.47 -0.34 -7.52 16 9 C 0.51 7.38 7.83 -10.98 -0.09 7.29 16 10 O -0.53 -9.82 15.98 5.56 0.09 -9.73 16 11 C -0.14 -2.10 5.70 -27.88 -0.16 -2.26 16 12 C -0.10 -1.98 4.44 -26.73 -0.12 -2.10 16 13 C 0.02 0.50 4.97 -27.88 -0.14 0.36 16 14 C -0.52 -14.75 9.11 -34.44 -0.31 -15.06 16 15 H 0.06 1.60 7.74 -52.49 -0.41 1.20 16 16 C 0.05 1.57 5.46 -17.82 -0.10 1.48 16 17 N -0.90 -26.81 13.29 55.43 0.74 -26.07 16 18 Si 0.89 21.79 29.54 -169.99 -5.02 16.77 16 19 H -0.27 -6.55 7.11 56.52 0.40 -6.15 16 20 H -0.28 -6.86 7.11 56.52 0.40 -6.45 16 21 H -0.28 -6.86 7.11 56.52 0.40 -6.46 16 22 S 0.27 1.58 23.01 -107.50 -2.47 -0.89 16 23 H 0.16 0.47 8.06 -52.49 -0.42 0.05 16 24 H 0.15 0.59 8.06 -52.49 -0.42 0.17 16 25 H 0.08 0.69 8.14 -51.93 -0.42 0.27 16 26 H 0.09 0.76 8.14 -51.93 -0.42 0.34 16 27 H 0.40 2.96 8.46 -40.82 -0.35 2.61 16 28 H 0.09 1.23 8.14 -51.93 -0.42 0.81 16 29 H 0.09 1.23 8.14 -51.93 -0.42 0.81 16 30 H 0.05 1.19 8.10 -51.93 -0.42 0.77 16 31 H 0.05 1.19 8.10 -51.93 -0.42 0.77 16 32 H 0.02 0.42 8.14 -51.93 -0.42 -0.01 16 33 H 0.02 0.42 8.14 -51.93 -0.42 -0.01 16 34 H 0.26 7.28 8.31 -40.82 -0.34 6.94 16 LS Contribution 324.55 15.07 4.89 4.89 Total: -1.00 -33.81 324.55 -8.03 -41.84 By element: Atomic # 1 Polarization: -0.22 SS G_CDS: -4.11 Total: -4.33 kcal Atomic # 6 Polarization: -8.78 SS G_CDS: -2.57 Total: -11.35 kcal Atomic # 7 Polarization: -38.37 SS G_CDS: 1.17 Total: -37.20 kcal Atomic # 8 Polarization: -9.82 SS G_CDS: 0.09 Total: -9.73 kcal Atomic # 14 Polarization: 21.79 SS G_CDS: -5.02 Total: 16.77 kcal Atomic # 16 Polarization: 1.58 SS G_CDS: -2.47 Total: -0.89 kcal Total LS contribution 4.89 Total: 4.89 kcal Total: -33.81 -8.03 -41.84 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001536702423.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 46.247 kcal (2) G-P(sol) polarization free energy of solvation -33.814 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 12.433 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.027 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.840 kcal (6) G-S(sol) free energy of system = (1) + (5) 4.406 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds