Wall clock time and date at job start Tue Mar 31 2020 00:42:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13602 * 1 3 3 C 1.43200 * 179.97438 * 2 1 4 4 C 1.36635 * 125.45492 * 51.60711 * 3 2 1 5 5 C 1.37618 * 113.26559 * 179.97438 * 4 3 2 6 6 C 1.33717 * 115.09620 * 359.97438 * 5 4 3 7 7 C 1.50696 * 124.50749 * 179.97438 * 6 5 4 8 8 N 1.46501 * 109.46879 * 90.03228 * 7 6 5 9 9 C 1.34785 * 119.99708 * 179.97438 * 8 7 6 10 10 O 1.21280 * 119.99960 * 359.97438 * 9 8 7 11 11 C 1.50702 * 119.99681 * 179.97438 * 9 8 7 12 12 C 1.52997 * 109.46788 * 179.97438 * 11 9 8 13 13 C 1.53002 * 109.47057 * 180.02562 * 12 11 9 14 14 C 1.50696 * 109.47122 * 180.02562 * 13 12 11 15 15 H 1.08002 * 120.00355 * 359.97438 * 14 13 12 16 16 C 1.37885 * 119.99976 * 180.02562 * 14 13 12 17 17 N 1.31513 * 119.99537 * 359.97438 * 16 14 13 18 18 Si 1.86798 * 119.99826 * 179.97438 * 16 14 13 19 19 H 1.48491 * 109.47390 * 359.97438 * 18 16 14 20 20 H 1.48498 * 109.47034 * 119.99937 * 18 16 14 21 21 H 1.48510 * 109.46840 * 239.99438 * 18 16 14 22 22 S 1.70609 * 110.97575 * 0.02562 * 6 5 4 23 23 H 1.07992 * 123.36750 * 359.73244 * 4 3 2 24 24 H 1.08000 * 122.44759 * 180.02562 * 5 4 3 25 25 H 1.09006 * 109.46869 * 210.02426 * 7 6 5 26 26 H 1.08994 * 109.47554 * 330.02643 * 7 6 5 27 27 H 0.96997 * 120.00382 * 359.97438 * 8 7 6 28 28 H 1.08999 * 109.47140 * 300.00048 * 11 9 8 29 29 H 1.09003 * 109.46988 * 59.99925 * 11 9 8 30 30 H 1.08999 * 109.47563 * 300.00087 * 12 11 9 31 31 H 1.09003 * 109.47174 * 60.00337 * 12 11 9 32 32 H 1.09006 * 109.46821 * 299.99983 * 13 12 11 33 33 H 1.08994 * 109.47157 * 59.99927 * 13 12 11 34 34 H 0.97005 * 119.99475 * 180.02562 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1360 0.0000 0.0000 3 6 2.5680 0.0006 0.0000 4 6 3.3609 -0.6902 -0.8723 5 6 4.7060 -0.5087 -0.6449 6 6 5.0043 0.3017 0.3760 7 6 6.4053 0.6470 0.8107 8 7 6.8587 1.8412 0.0934 9 6 8.0903 2.3382 0.3230 10 8 8.8230 1.7970 1.1237 11 6 8.5569 3.5663 -0.4153 12 6 9.9788 3.9177 0.0271 13 6 10.4523 5.1650 -0.7219 14 6 11.8530 5.5107 -0.2867 15 1 12.3552 4.9021 0.4507 16 6 12.4932 6.6049 -0.8292 17 7 11.8816 7.3463 -1.7268 18 14 14.2292 7.0338 -0.2891 19 1 14.6896 6.0508 0.7241 20 1 15.1366 6.9962 -1.4640 21 1 14.2412 8.3961 0.3022 22 16 3.5877 0.8914 1.1217 23 1 2.9711 -1.3191 -1.6590 24 1 5.4650 -0.9853 -1.2476 25 1 6.4153 0.8417 1.8832 26 1 7.0711 -0.1863 0.5864 27 1 6.2725 2.2743 -0.5467 28 1 8.5474 3.3712 -1.4876 29 1 7.8908 4.3996 -0.1917 30 1 9.9880 4.1130 1.0994 31 1 10.6452 3.0845 -0.1962 32 1 10.4431 4.9701 -1.7944 33 1 9.7859 5.9980 -0.4983 34 1 12.3321 8.1158 -2.1087 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001536702423.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:42:29 Heat of formation + Delta-G solvation = -17.027399 kcal Electronic energy + Delta-G solvation = -17265.640759 eV Core-core repulsion = 14288.777920 eV Total energy + Delta-G solvation = -2976.862840 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 278.083 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -40.77317 -39.30652 -37.64880 -36.19902 -35.72043 -33.99831 -31.90796 -29.78079 -27.85977 -25.74375 -24.31032 -22.25556 -21.94153 -21.23515 -19.48714 -18.51357 -17.72755 -17.46176 -16.92448 -16.69736 -16.45601 -15.62004 -15.27416 -15.22823 -14.77872 -14.56362 -14.27347 -14.20501 -13.89981 -13.70969 -13.45157 -13.21640 -13.02912 -12.83278 -12.57744 -12.48677 -12.34496 -11.86455 -11.50769 -11.43951 -11.22538 -10.83671 -10.52370 -10.11979 -9.81973 -9.57481 -8.18336 -6.27678 -0.65667 0.11914 0.82058 1.30701 1.40849 1.41548 1.55020 1.69708 1.79974 2.20665 2.37410 2.45269 2.83827 3.14844 3.51958 3.96379 4.13701 4.29354 4.32812 4.37340 4.58624 4.68635 4.88449 4.96414 5.03002 5.11362 5.16552 5.23690 5.34357 5.40493 5.58381 5.80041 5.90802 6.30460 6.31483 6.56090 6.88609 7.29069 7.40952 8.93233 Molecular weight = 278.08amu Principal moments of inertia in cm(-1) A = 0.046288 B = 0.002386 C = 0.002337 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 604.766559 B =11732.585519 C =11976.309131 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.453 5.453 2 C 0.303 3.697 3 C -0.185 4.185 4 C -0.043 4.043 5 C -0.117 4.117 6 C -0.218 4.218 7 C 0.189 3.811 8 N -0.717 5.717 9 C 0.521 3.479 10 O -0.581 6.581 11 C -0.131 4.131 12 C -0.083 4.083 13 C 0.024 3.976 14 C -0.545 4.545 15 H 0.051 0.949 16 C 0.001 3.999 17 N -0.929 5.929 18 Si 0.961 3.039 19 H -0.267 1.267 20 H -0.276 1.276 21 H -0.277 1.277 22 S 0.277 5.723 23 H 0.177 0.823 24 H 0.170 0.830 25 H 0.075 0.925 26 H 0.092 0.908 27 H 0.417 0.583 28 H 0.110 0.890 29 H 0.108 0.892 30 H 0.040 0.960 31 H 0.041 0.959 32 H 0.001 0.999 33 H 0.001 0.999 34 H 0.264 0.736 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.513 -16.647 1.578 24.946 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.132 5.132 2 C -0.012 4.012 3 C -0.306 4.306 4 C -0.079 4.079 5 C -0.149 4.149 6 C -0.339 4.339 7 C 0.064 3.936 8 N -0.372 5.372 9 C 0.309 3.691 10 O -0.460 6.460 11 C -0.171 4.171 12 C -0.122 4.122 13 C -0.013 4.013 14 C -0.583 4.583 15 H 0.070 0.930 16 C -0.197 4.197 17 N -0.570 5.570 18 Si 0.786 3.214 19 H -0.192 1.192 20 H -0.202 1.202 21 H -0.202 1.202 22 S 0.547 5.453 23 H 0.194 0.806 24 H 0.188 0.812 25 H 0.093 0.907 26 H 0.110 0.890 27 H 0.254 0.746 28 H 0.128 0.872 29 H 0.126 0.874 30 H 0.059 0.941 31 H 0.060 0.940 32 H 0.020 0.980 33 H 0.019 0.981 34 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges -20.008 -15.901 3.319 25.772 hybrid contribution 1.324 -0.283 -1.311 1.885 sum -18.684 -16.184 2.008 24.800 Atomic orbital electron populations 1.81346 1.12606 1.09990 1.09232 1.24530 0.91220 0.92616 0.92814 1.20548 0.88382 1.13253 1.08443 1.21012 0.91750 0.97216 0.97970 1.20215 0.96779 0.99832 0.98112 1.24171 0.99944 1.06164 1.03623 1.19671 0.88549 0.88709 0.96678 1.45988 1.15954 1.29877 1.45344 1.20982 0.81051 0.85416 0.81667 1.90685 1.55846 1.62155 1.37321 1.21683 0.98022 0.95560 1.01829 1.21166 0.94329 0.97564 0.99099 1.19037 0.94666 0.92775 0.94806 1.21739 1.01496 1.11538 1.23506 0.93022 1.25910 1.02424 0.96203 0.95117 1.70073 1.39259 1.17990 1.29655 0.85461 0.79471 0.78152 0.78350 1.19162 1.20161 1.20219 1.83508 0.91818 1.41904 1.28070 0.80572 0.81215 0.90654 0.89038 0.74594 0.87220 0.87392 0.94088 0.93972 0.98021 0.98099 0.92731 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.45 -9.72 18.54 19.00 0.35 -9.37 16 2 C 0.30 4.84 15.83 88.33 1.40 6.23 16 3 C -0.19 -1.97 6.32 23.14 0.15 -1.82 16 4 C -0.04 -0.29 10.24 21.75 0.22 -0.07 16 5 C -0.12 -0.80 10.00 21.10 0.21 -0.59 16 6 C -0.22 -2.09 5.64 24.66 0.14 -1.95 16 7 C 0.19 2.69 6.10 85.63 0.52 3.21 16 8 N -0.72 -12.31 5.55 -466.78 -2.59 -14.90 16 9 C 0.52 14.22 7.83 87.66 0.69 14.90 16 10 O -0.58 -21.11 15.98 -3.03 -0.05 -21.16 16 11 C -0.13 -3.84 5.70 29.85 0.17 -3.67 16 12 C -0.08 -3.49 4.44 30.59 0.14 -3.35 16 13 C 0.02 1.25 4.97 29.85 0.15 1.40 16 14 C -0.54 -31.51 9.11 25.60 0.23 -31.28 16 15 H 0.05 2.96 7.74 -2.91 -0.02 2.94 16 16 C 0.00 0.07 5.46 84.66 0.46 0.54 16 17 N -0.93 -55.79 13.29 21.45 0.28 -55.50 16 18 Si 0.96 44.68 29.54 68.60 2.03 46.71 16 19 H -0.27 -12.11 7.11 99.48 0.71 -11.40 16 20 H -0.28 -12.41 7.11 99.48 0.71 -11.70 16 21 H -0.28 -12.45 7.11 99.48 0.71 -11.75 16 22 S 0.28 2.71 23.01 -56.49 -1.30 1.41 16 23 H 0.18 0.43 8.06 -2.91 -0.02 0.41 16 24 H 0.17 0.64 8.06 -2.91 -0.02 0.62 16 25 H 0.08 1.20 8.14 -2.38 -0.02 1.18 16 26 H 0.09 1.35 8.14 -2.39 -0.02 1.33 16 27 H 0.42 4.87 8.46 -92.71 -0.78 4.09 16 28 H 0.11 2.79 8.14 -2.39 -0.02 2.77 16 29 H 0.11 2.77 8.14 -2.39 -0.02 2.75 16 30 H 0.04 1.80 8.10 -2.39 -0.02 1.78 16 31 H 0.04 1.84 8.10 -2.39 -0.02 1.82 16 32 H 0.00 0.08 8.14 -2.38 -0.02 0.06 16 33 H 0.00 0.03 8.14 -2.39 -0.02 0.01 16 34 H 0.26 14.81 8.31 -92.70 -0.77 14.04 16 Total: -1.00 -73.84 324.55 3.54 -70.30 By element: Atomic # 1 Polarization: -1.39 SS G_CDS: 0.34 Total: -1.05 kcal Atomic # 6 Polarization: -20.92 SS G_CDS: 4.48 Total: -16.44 kcal Atomic # 7 Polarization: -77.82 SS G_CDS: -1.95 Total: -79.77 kcal Atomic # 8 Polarization: -21.11 SS G_CDS: -0.05 Total: -21.16 kcal Atomic # 14 Polarization: 44.68 SS G_CDS: 2.03 Total: 46.71 kcal Atomic # 16 Polarization: 2.71 SS G_CDS: -1.30 Total: 1.41 kcal Total: -73.84 3.54 -70.30 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001536702423.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 53.273 kcal (2) G-P(sol) polarization free energy of solvation -73.842 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -20.569 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.541 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.300 kcal (6) G-S(sol) free energy of system = (1) + (5) -17.027 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds