Wall clock time and date at job start Mon Mar 30 2020 23:59:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13594 * 1 3 3 C 1.43204 * 179.97438 * 2 1 4 4 C 1.38280 * 120.73180 * 269.27904 * 3 2 1 5 5 N 1.35093 * 119.00604 * 179.97438 * 4 3 2 6 6 C 1.46500 * 119.71153 * 180.02562 * 5 4 3 7 7 C 1.52997 * 109.47473 * 89.99786 * 6 5 4 8 8 C 1.50701 * 109.47212 * 179.97438 * 7 6 5 9 9 O 1.21294 * 119.99849 * 0.02562 * 8 7 6 10 10 N 1.34780 * 119.99795 * 179.97438 * 8 7 6 11 11 C 1.37101 * 119.99707 * 180.02562 * 10 8 7 12 12 H 1.08002 * 119.99704 * 359.97438 * 11 10 8 13 13 C 1.38941 * 119.99927 * 180.02562 * 11 10 8 14 14 N 1.31417 * 120.00180 * 359.97438 * 13 11 10 15 15 Si 1.86800 * 120.00273 * 180.02562 * 13 11 10 16 16 H 1.48496 * 109.47117 * 59.99412 * 15 13 11 17 17 H 1.48498 * 109.47600 * 179.97438 * 15 13 11 18 18 H 1.48503 * 109.47088 * 299.99811 * 15 13 11 19 19 C 1.34457 * 120.57243 * 0.27056 * 5 4 3 20 20 O 1.21917 * 119.19964 * 179.70433 * 19 5 4 21 21 N 1.33305 * 121.59194 * 359.44252 * 19 5 4 22 22 C 1.32225 * 120.94691 * 0.56009 * 21 19 5 23 23 O 1.35038 * 120.32348 * 179.70194 * 22 21 19 24 24 H 1.08001 * 120.49742 * 359.95851 * 4 3 2 25 25 H 1.09002 * 109.47129 * 329.99529 * 6 5 4 26 26 H 1.08998 * 109.46845 * 210.00336 * 6 5 4 27 27 H 1.09002 * 109.47153 * 59.99757 * 7 6 5 28 28 H 1.09001 * 109.46832 * 299.99948 * 7 6 5 29 29 H 0.96995 * 120.00011 * 0.02562 * 10 8 7 30 30 H 0.97000 * 119.99884 * 180.02562 * 14 13 11 31 31 H 0.96696 * 113.99834 * 0.02562 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1359 0.0000 0.0000 3 6 2.5680 0.0006 0.0000 4 6 3.2746 0.0159 1.1885 5 7 4.6249 0.0155 1.1478 6 6 5.3890 0.0310 2.3977 7 6 5.6551 -1.4060 2.8507 8 6 6.4416 -1.3900 4.1361 9 8 6.7578 -0.3332 4.6405 10 7 6.7928 -2.5500 4.7257 11 6 7.5079 -2.5354 5.8954 12 1 7.7901 -1.5944 6.3440 13 6 7.8704 -3.7312 6.5030 14 7 7.5273 -4.8762 5.9568 15 14 8.8441 -3.7114 8.0970 16 1 8.0672 -2.9986 9.1427 17 1 9.1020 -5.1061 8.5369 18 1 10.1367 -3.0137 7.8788 19 6 5.2736 0.0059 -0.0298 20 8 6.4928 0.0112 -0.0374 21 7 4.6160 -0.0145 -1.1892 22 6 3.2942 -0.0150 -1.2212 23 8 2.6408 -0.0297 -2.4030 24 1 2.7548 0.0283 2.1351 25 1 4.8192 0.5544 3.1655 26 1 6.3378 0.5430 2.2372 27 1 6.2249 -1.9294 2.0830 28 1 4.7062 -1.9178 3.0113 29 1 6.5396 -3.3950 4.3226 30 1 7.7801 -5.7110 6.3812 31 1 3.2236 -0.0396 -3.1745 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001546236243.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 23:59:54 Heat of formation + Delta-G solvation = -68.365871 kcal Electronic energy + Delta-G solvation = -20227.704890 eV Core-core repulsion = 16702.322633 eV Total energy + Delta-G solvation = -3525.382257 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 278.085 amu Computer time = 0.14 seconds Orbital eigenvalues (eV) -43.11464 -40.31389 -39.84171 -38.30778 -37.46175 -36.29462 -35.83078 -33.37274 -32.98247 -31.76706 -27.55832 -26.36461 -25.67698 -24.34543 -21.12354 -20.99552 -20.48093 -19.90001 -19.41564 -18.22620 -17.53627 -17.14498 -16.63799 -16.33960 -16.11956 -15.86898 -15.52668 -15.46184 -14.99994 -14.73118 -14.42619 -14.25600 -14.17981 -13.78577 -13.71077 -13.48751 -12.91792 -12.58100 -12.41904 -12.30437 -12.11579 -12.07092 -11.50514 -11.35590 -11.13919 -10.43653 -10.03036 -9.83020 -8.47151 -5.96183 -0.52838 0.02075 0.99723 1.40704 1.44312 1.54386 1.60983 2.01826 2.02100 2.11333 2.30705 2.63816 2.67596 3.02483 3.15513 3.20843 3.54457 3.78570 3.86851 4.04776 4.10202 4.32432 4.50998 4.65344 4.79743 4.97900 5.12092 5.42036 5.97988 6.09012 6.46864 6.53225 6.55665 6.89660 7.10484 7.53520 8.06354 8.69607 Molecular weight = 278.08amu Principal moments of inertia in cm(-1) A = 0.030617 B = 0.003393 C = 0.003253 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 914.317314 B = 8251.393037 C = 8605.077855 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.449 5.449 2 C 0.306 3.694 3 C -0.200 4.200 4 C 0.300 3.700 5 N -0.504 5.504 6 C 0.119 3.881 7 C -0.134 4.134 8 C 0.444 3.556 9 O -0.630 6.630 10 N -0.569 5.569 11 C -0.336 4.336 12 H 0.084 0.916 13 C -0.011 4.011 14 N -0.919 5.919 15 Si 0.991 3.009 16 H -0.268 1.268 17 H -0.273 1.273 18 H -0.274 1.274 19 C 0.650 3.350 20 O -0.563 6.563 21 N -0.628 5.628 22 C 0.499 3.501 23 O -0.436 6.436 24 H 0.248 0.752 25 H 0.141 0.859 26 H 0.088 0.912 27 H 0.084 0.916 28 H 0.126 0.874 29 H 0.397 0.603 30 H 0.278 0.722 31 H 0.440 0.560 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.950 6.542 -11.485 17.819 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.126 5.126 2 C -0.010 4.010 3 C -0.213 4.213 4 C 0.156 3.844 5 N -0.213 5.213 6 C -0.003 4.003 7 C -0.174 4.174 8 C 0.232 3.768 9 O -0.518 6.518 10 N -0.205 5.205 11 C -0.465 4.465 12 H 0.102 0.898 13 C -0.211 4.211 14 N -0.560 5.560 15 Si 0.815 3.185 16 H -0.193 1.193 17 H -0.198 1.198 18 H -0.199 1.199 19 C 0.352 3.648 20 O -0.439 6.439 21 N -0.387 5.387 22 C 0.297 3.703 23 O -0.233 6.233 24 H 0.264 0.736 25 H 0.158 0.842 26 H 0.107 0.893 27 H 0.103 0.897 28 H 0.144 0.856 29 H 0.231 0.769 30 H 0.087 0.913 31 H 0.301 0.699 Dipole moment (debyes) X Y Z Total from point charges -12.472 7.021 -11.476 18.345 hybrid contribution 1.109 -0.687 0.455 1.382 sum -11.363 6.334 -11.021 17.050 Atomic orbital electron populations 1.81345 1.12518 1.11681 1.07094 1.24308 0.90855 0.92195 0.93602 1.15125 0.85927 1.29242 0.91015 1.23501 0.81807 0.78069 1.01043 1.46380 1.07256 1.56872 1.10821 1.21848 0.98925 0.97522 0.82019 1.21697 1.02671 0.98253 0.94804 1.20472 0.84795 0.83747 0.87811 1.90524 1.61386 1.31558 1.68313 1.41952 1.48566 1.07644 1.22304 1.19683 1.31776 0.94226 1.00860 0.89795 1.26034 0.98482 0.94062 1.02555 1.69664 1.46821 0.98002 1.41487 0.85009 0.78411 0.77547 0.77546 1.19292 1.19817 1.19892 1.17581 0.88003 0.78864 0.80365 1.91038 1.12971 1.54010 1.85870 1.69675 1.07720 1.35784 1.25562 1.20176 0.86229 0.77349 0.86525 1.84999 1.38008 1.85219 1.15107 0.73608 0.84161 0.89330 0.89749 0.85598 0.76912 0.91282 0.69878 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.45 -9.29 18.54 19.00 0.35 -8.93 16 2 C 0.31 4.62 14.99 88.33 1.32 5.95 16 3 C -0.20 -2.41 5.77 -21.07 -0.12 -2.53 16 4 C 0.30 2.76 10.14 84.20 0.85 3.61 16 5 N -0.50 -9.22 2.56 -656.32 -1.68 -10.90 16 6 C 0.12 2.70 4.61 86.38 0.40 3.09 16 7 C -0.13 -3.66 6.02 29.85 0.18 -3.48 16 8 C 0.44 18.65 7.78 87.66 0.68 19.34 16 9 O -0.63 -30.77 15.56 -3.07 -0.05 -30.82 16 10 N -0.57 -27.15 5.29 -306.98 -1.62 -28.77 16 11 C -0.34 -18.10 9.68 84.04 0.81 -17.28 16 12 H 0.08 4.78 7.16 -2.91 -0.02 4.75 16 13 C -0.01 -0.57 5.50 84.92 0.47 -0.11 16 14 N -0.92 -48.04 13.05 21.66 0.28 -47.76 16 15 Si 0.99 41.32 29.55 68.60 2.03 43.35 16 16 H -0.27 -10.89 7.11 99.48 0.71 -10.18 16 17 H -0.27 -10.86 7.11 99.48 0.71 -10.15 16 18 H -0.27 -11.38 7.11 99.48 0.71 -10.68 16 19 C 0.65 17.34 8.32 179.61 1.49 18.84 16 20 O -0.56 -20.89 16.67 -5.05 -0.08 -20.97 16 21 N -0.63 -14.03 10.38 -438.17 -4.55 -18.57 16 22 C 0.50 7.50 7.92 85.59 0.68 8.18 16 23 O -0.44 -4.63 13.06 -83.11 -1.09 -5.71 16 24 H 0.25 -0.21 8.05 -2.91 -0.02 -0.24 16 25 H 0.14 2.36 7.98 -2.39 -0.02 2.34 16 26 H 0.09 2.67 7.31 -2.39 -0.02 2.65 16 27 H 0.08 2.49 8.14 -2.39 -0.02 2.47 16 28 H 0.13 2.44 8.14 -2.39 -0.02 2.42 16 29 H 0.40 18.13 7.90 -92.71 -0.73 17.39 16 30 H 0.28 13.69 8.31 -92.71 -0.77 12.92 16 31 H 0.44 1.28 8.98 -74.06 -0.67 0.62 16 Total: -1.00 -79.37 298.67 0.19 -79.17 By element: Atomic # 1 Polarization: 14.48 SS G_CDS: -0.17 Total: 14.32 kcal Atomic # 6 Polarization: 28.84 SS G_CDS: 6.77 Total: 35.61 kcal Atomic # 7 Polarization: -107.72 SS G_CDS: -7.22 Total: -114.94 kcal Atomic # 8 Polarization: -56.29 SS G_CDS: -1.22 Total: -57.51 kcal Atomic # 14 Polarization: 41.32 SS G_CDS: 2.03 Total: 43.35 kcal Total: -79.37 0.19 -79.17 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001546236243.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 10.805 kcal (2) G-P(sol) polarization free energy of solvation -79.366 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -68.561 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.195 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.171 kcal (6) G-S(sol) free energy of system = (1) + (5) -68.366 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.14 seconds