Wall clock time and date at job start Tue Mar 31 2020 00:03:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31294 * 1 3 3 Si 1.86803 * 120.00005 * 2 1 4 4 H 1.48498 * 109.47174 * 270.00222 * 3 2 1 5 5 H 1.48501 * 109.47062 * 30.00173 * 3 2 1 6 6 H 1.48504 * 109.46913 * 149.99972 * 3 2 1 7 7 C 1.38992 * 120.00157 * 180.02562 * 2 1 3 8 8 H 1.08002 * 119.99846 * 179.97438 * 7 2 1 9 9 N 1.37312 * 119.99460 * 0.27649 * 7 2 1 10 10 C 1.36490 * 126.06289 * 179.72506 * 9 7 2 11 11 C 1.35709 * 107.50801 * 179.97438 * 10 9 7 12 12 N 1.40484 * 126.09065 * 179.97438 * 11 10 9 13 13 C 1.34777 * 120.00408 * 179.97438 * 12 11 10 14 14 O 1.21527 * 119.99641 * 0.02562 * 13 12 11 15 15 C 1.48290 * 120.00150 * 179.97438 * 13 12 11 16 16 C 1.42290 * 126.93707 * 179.70842 * 15 13 12 17 17 C 1.35312 * 103.92099 * 179.89072 * 16 15 13 18 18 C 1.50692 * 126.66520 * 180.12054 * 17 16 15 19 19 O 1.42895 * 109.47562 * 90.32743 * 18 17 16 20 20 O 1.34017 * 106.67028 * 0.37509 * 17 16 15 21 21 N 1.20908 * 111.85438 * 359.74417 * 20 17 16 22 22 C 1.40677 * 107.82259 * 359.97438 * 11 10 9 23 23 N 1.30901 * 108.38561 * 359.74766 * 22 11 10 24 24 H 0.97005 * 119.99961 * 359.97438 * 1 2 3 25 25 H 1.08004 * 126.24714 * 359.93991 * 10 9 7 26 26 H 0.97001 * 120.00290 * 359.97438 * 12 11 10 27 27 H 1.07993 * 128.04311 * 0.03113 * 16 15 13 28 28 H 1.09000 * 109.47350 * 210.33177 * 18 17 16 29 29 H 1.09000 * 109.47210 * 330.32476 * 18 17 16 30 30 H 0.96696 * 114.00677 * 179.97438 * 19 18 17 31 31 H 1.08000 * 125.80703 * 179.97438 * 22 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3129 0.0000 0.0000 3 14 2.2470 1.6178 0.0000 4 1 2.4944 2.0465 -1.4001 5 1 1.4444 2.6527 0.7001 6 1 3.5445 1.4401 0.7001 7 6 2.0079 -1.2037 -0.0005 8 1 3.0880 -1.2036 -0.0010 9 7 1.3213 -2.3928 -0.0068 10 6 1.8750 -3.6403 -0.0134 11 6 0.8577 -4.5385 -0.0175 12 7 0.9887 -5.9372 -0.0252 13 6 -0.1105 -6.7171 -0.0281 14 8 -1.2150 -6.2103 -0.0246 15 6 0.0279 -8.1935 -0.0368 16 6 -1.0247 -9.1510 -0.0350 17 6 -0.3817 -10.3415 -0.0480 18 6 -1.0178 -11.7076 -0.0547 19 8 -1.2198 -12.1324 -1.4040 20 8 0.9306 -10.0698 -0.0479 21 7 1.1438 -8.8797 -0.0417 22 6 -0.3515 -3.8195 -0.0128 23 7 -0.0715 -2.5409 -0.0006 24 1 -0.4850 0.8401 0.0004 25 1 2.9302 -3.8706 -0.0155 26 1 1.8703 -6.3418 -0.0284 27 1 -2.0893 -8.9697 -0.0277 28 1 -0.3640 -12.4153 0.4550 29 1 -1.9776 -11.6641 0.4601 30 1 -1.6264 -13.0061 -1.4847 31 1 -1.3422 -4.2495 -0.0149 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001583623044.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:03:32 Heat of formation + Delta-G solvation = 71.962831 kcal Electronic energy + Delta-G solvation = -20139.664369 eV Core-core repulsion = 16620.367221 eV Total energy + Delta-G solvation = -3519.297148 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 278.085 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -45.17443 -39.93774 -38.56166 -37.43947 -34.35176 -34.05710 -33.21841 -32.44425 -30.27607 -27.96881 -26.98900 -25.42060 -24.11873 -22.69939 -21.04729 -20.07687 -19.37808 -18.38605 -17.79366 -17.49047 -17.40030 -16.47777 -15.50907 -15.39188 -15.12767 -14.69023 -14.57687 -14.14587 -13.65182 -13.51706 -13.19615 -12.93948 -12.44493 -11.79339 -11.69511 -11.47452 -11.28643 -10.99400 -10.64169 -10.55321 -10.53680 -10.21218 -9.81884 -9.57636 -9.20673 -8.85804 -8.09856 -6.75497 -6.58188 -4.25429 1.00779 1.54082 2.67549 2.93133 3.03929 3.09567 3.24381 3.27791 3.71291 3.81460 3.91255 4.10286 4.39879 4.42399 4.62479 4.75150 4.89305 4.94286 5.00097 5.26670 5.36408 5.73723 6.22422 6.40440 6.82384 6.91265 7.02004 7.06596 7.18926 7.81155 7.86838 8.11397 8.21261 8.53511 8.73488 9.33900 9.62529 10.37719 Molecular weight = 278.08amu Principal moments of inertia in cm(-1) A = 0.067536 B = 0.003026 C = 0.002924 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 414.495188 B = 9252.433213 C = 9573.566903 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.768 5.768 2 C 0.046 3.954 3 Si 0.936 3.064 4 H -0.270 1.270 5 H -0.275 1.275 6 H -0.263 1.263 7 C -0.322 4.322 8 H 0.118 0.882 9 N -0.140 5.140 10 C -0.079 4.079 11 C -0.065 4.065 12 N -0.601 5.601 13 C 0.576 3.424 14 O -0.519 6.519 15 C -0.012 4.012 16 C -0.154 4.154 17 C -0.049 4.049 18 C 0.163 3.837 19 O -0.565 6.565 20 O 0.126 5.874 21 N -0.330 5.330 22 C -0.029 4.029 23 N -0.259 5.259 24 H 0.276 0.724 25 H 0.148 0.852 26 H 0.403 0.597 27 H 0.183 0.817 28 H 0.074 0.926 29 H 0.086 0.914 30 H 0.390 0.610 31 H 0.177 0.823 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.014 -20.108 0.899 20.128 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.395 5.395 2 C -0.172 4.172 3 Si 0.760 3.240 4 H -0.195 1.195 5 H -0.200 1.200 6 H -0.188 1.188 7 C -0.454 4.454 8 H 0.135 0.865 9 N 0.093 4.907 10 C -0.231 4.231 11 C -0.171 4.171 12 N -0.243 5.243 13 C 0.359 3.641 14 O -0.394 6.394 15 C -0.171 4.171 16 C -0.176 4.176 17 C -0.113 4.113 18 C 0.084 3.916 19 O -0.372 6.372 20 O 0.049 5.951 21 N -0.031 5.031 22 C -0.205 4.205 23 N -0.090 5.090 24 H 0.086 0.914 25 H 0.165 0.835 26 H 0.237 0.763 27 H 0.200 0.800 28 H 0.092 0.908 29 H 0.104 0.896 30 H 0.239 0.761 31 H 0.194 0.806 Dipole moment (debyes) X Y Z Total from point charges 0.088 -17.385 0.795 17.403 hybrid contribution 0.239 -0.935 0.099 0.970 sum 0.326 -18.320 0.894 18.344 Atomic orbital electron populations 1.70217 1.06159 1.28093 1.34995 1.25666 0.95733 1.00341 0.95424 0.85804 0.79390 0.79816 0.79008 1.19543 1.20044 1.18765 1.19910 0.91733 0.80481 1.53303 0.86489 1.44573 1.04076 1.03324 1.38708 1.21266 0.96899 0.85258 1.19638 1.17238 0.94615 0.80611 1.24604 1.42290 1.08107 1.04765 1.69127 1.16630 0.85003 0.82411 0.80007 1.90701 1.25492 1.72618 1.50606 1.23682 0.89548 0.97346 1.06545 1.22502 1.02016 0.89250 1.03841 1.23961 0.83387 0.97757 1.06154 1.20227 0.98726 0.87771 0.84830 1.86560 1.85313 1.40124 1.25202 1.84763 1.25181 1.19185 1.65925 1.74184 1.23439 0.89391 1.16057 1.24129 0.97939 0.90763 1.07625 1.78264 0.90096 1.14925 1.25753 0.91379 0.83469 0.76277 0.79958 0.90773 0.89617 0.76077 0.80614 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.77 -21.55 11.81 55.50 0.66 -20.89 16 2 C 0.05 1.19 5.50 -17.50 -0.10 1.09 16 3 Si 0.94 19.00 29.55 -169.99 -5.02 13.97 16 4 H -0.27 -5.40 7.11 56.52 0.40 -5.00 16 5 H -0.28 -5.53 7.11 56.52 0.40 -5.13 16 6 H -0.26 -5.12 7.11 56.52 0.40 -4.71 16 7 C -0.32 -8.59 10.25 -14.82 -0.15 -8.74 16 8 H 0.12 2.78 7.83 -52.49 -0.41 2.37 16 9 N -0.14 -3.89 3.74 -11.40 -0.04 -3.94 16 10 C -0.08 -1.92 11.49 -16.38 -0.19 -2.11 16 11 C -0.07 -1.57 6.90 -83.87 -0.58 -2.14 16 12 N -0.60 -11.94 5.46 -10.73 -0.06 -12.00 16 13 C 0.58 11.28 7.82 -12.13 -0.09 11.18 16 14 O -0.52 -11.58 14.10 5.34 0.08 -11.51 16 15 C -0.01 -0.19 7.19 -82.53 -0.59 -0.78 16 16 C -0.15 -1.96 10.92 -39.07 -0.43 -2.39 16 17 C -0.05 -0.52 7.10 -35.35 -0.25 -0.77 16 18 C 0.16 0.95 7.60 36.00 0.27 1.23 16 19 O -0.56 -3.89 13.64 -35.23 -0.48 -4.37 16 20 O 0.13 1.58 11.18 17.24 0.19 1.77 16 21 N -0.33 -4.88 11.84 33.29 0.39 -4.48 16 22 C -0.03 -0.78 10.85 -17.03 -0.18 -0.96 16 23 N -0.26 -7.64 10.39 30.81 0.32 -7.32 16 24 H 0.28 7.05 8.31 -40.82 -0.34 6.71 16 25 H 0.15 3.00 8.06 -52.48 -0.42 2.57 16 26 H 0.40 6.81 8.58 -40.82 -0.35 6.46 16 27 H 0.18 2.01 8.06 -52.49 -0.42 1.59 16 28 H 0.07 0.26 8.14 -51.93 -0.42 -0.16 16 29 H 0.09 0.29 8.14 -51.93 -0.42 -0.13 16 30 H 0.39 0.50 9.12 45.56 0.42 0.91 16 31 H 0.18 4.63 5.92 -52.49 -0.31 4.32 16 LS Contribution 290.81 15.07 4.38 4.38 Total: -1.00 -35.61 290.81 -3.36 -38.97 By element: Atomic # 1 Polarization: 11.29 SS G_CDS: -1.48 Total: 9.81 kcal Atomic # 6 Polarization: -2.11 SS G_CDS: -2.29 Total: -4.40 kcal Atomic # 7 Polarization: -49.90 SS G_CDS: 1.27 Total: -48.63 kcal Atomic # 8 Polarization: -13.89 SS G_CDS: -0.21 Total: -14.10 kcal Atomic # 14 Polarization: 19.00 SS G_CDS: -5.02 Total: 13.97 kcal Total LS contribution 4.38 Total: 4.38 kcal Total: -35.61 -3.36 -38.97 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001583623044.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 110.934 kcal (2) G-P(sol) polarization free energy of solvation -35.612 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 75.322 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.359 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.971 kcal (6) G-S(sol) free energy of system = (1) + (5) 71.963 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds