Wall clock time and date at job start Tue Mar 31 2020 00:03:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31294 * 1 3 3 Si 1.86803 * 120.00005 * 2 1 4 4 H 1.48498 * 109.47174 * 270.00222 * 3 2 1 5 5 H 1.48501 * 109.47062 * 30.00173 * 3 2 1 6 6 H 1.48504 * 109.46913 * 149.99972 * 3 2 1 7 7 C 1.38992 * 120.00157 * 180.02562 * 2 1 3 8 8 H 1.08002 * 119.99846 * 179.97438 * 7 2 1 9 9 N 1.37312 * 119.99460 * 0.27649 * 7 2 1 10 10 C 1.36490 * 126.06289 * 179.72506 * 9 7 2 11 11 C 1.35709 * 107.50801 * 179.97438 * 10 9 7 12 12 N 1.40484 * 126.09065 * 179.97438 * 11 10 9 13 13 C 1.34777 * 120.00408 * 179.97438 * 12 11 10 14 14 O 1.21527 * 119.99641 * 0.02562 * 13 12 11 15 15 C 1.48290 * 120.00150 * 179.97438 * 13 12 11 16 16 C 1.42290 * 126.93707 * 179.70842 * 15 13 12 17 17 C 1.35312 * 103.92099 * 179.89072 * 16 15 13 18 18 C 1.50692 * 126.66520 * 180.12054 * 17 16 15 19 19 O 1.42895 * 109.47562 * 90.32743 * 18 17 16 20 20 O 1.34017 * 106.67028 * 0.37509 * 17 16 15 21 21 N 1.20908 * 111.85438 * 359.74417 * 20 17 16 22 22 C 1.40677 * 107.82259 * 359.97438 * 11 10 9 23 23 N 1.30901 * 108.38561 * 359.74766 * 22 11 10 24 24 H 0.97005 * 119.99961 * 359.97438 * 1 2 3 25 25 H 1.08004 * 126.24714 * 359.93991 * 10 9 7 26 26 H 0.97001 * 120.00290 * 359.97438 * 12 11 10 27 27 H 1.07993 * 128.04311 * 0.03113 * 16 15 13 28 28 H 1.09000 * 109.47350 * 210.33177 * 18 17 16 29 29 H 1.09000 * 109.47210 * 330.32476 * 18 17 16 30 30 H 0.96696 * 114.00677 * 179.97438 * 19 18 17 31 31 H 1.08000 * 125.80703 * 179.97438 * 22 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3129 0.0000 0.0000 3 14 2.2470 1.6178 0.0000 4 1 2.4944 2.0465 -1.4001 5 1 1.4444 2.6527 0.7001 6 1 3.5445 1.4401 0.7001 7 6 2.0079 -1.2037 -0.0005 8 1 3.0880 -1.2036 -0.0010 9 7 1.3213 -2.3928 -0.0068 10 6 1.8750 -3.6403 -0.0134 11 6 0.8577 -4.5385 -0.0175 12 7 0.9887 -5.9372 -0.0252 13 6 -0.1105 -6.7171 -0.0281 14 8 -1.2150 -6.2103 -0.0246 15 6 0.0279 -8.1935 -0.0368 16 6 -1.0247 -9.1510 -0.0350 17 6 -0.3817 -10.3415 -0.0480 18 6 -1.0178 -11.7076 -0.0547 19 8 -1.2198 -12.1324 -1.4040 20 8 0.9306 -10.0698 -0.0479 21 7 1.1438 -8.8797 -0.0417 22 6 -0.3515 -3.8195 -0.0128 23 7 -0.0715 -2.5409 -0.0006 24 1 -0.4850 0.8401 0.0004 25 1 2.9302 -3.8706 -0.0155 26 1 1.8703 -6.3418 -0.0284 27 1 -2.0893 -8.9697 -0.0277 28 1 -0.3640 -12.4153 0.4550 29 1 -1.9776 -11.6641 0.4601 30 1 -1.6264 -13.0061 -1.4847 31 1 -1.3422 -4.2495 -0.0149 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001583623044.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:03:32 Heat of formation + Delta-G solvation = 42.501327 kcal Electronic energy + Delta-G solvation = -20140.941916 eV Core-core repulsion = 16620.367221 eV Total energy + Delta-G solvation = -3520.574695 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 278.085 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -46.25697 -41.81950 -40.30819 -37.89920 -36.12496 -35.31394 -34.92432 -33.42275 -32.30361 -29.85386 -27.66392 -27.19419 -25.63220 -23.83616 -22.96069 -21.69041 -21.13432 -19.33971 -19.19293 -18.83519 -18.09386 -17.86232 -17.45140 -16.98748 -16.25744 -15.99228 -15.72090 -15.57107 -15.16176 -15.08153 -14.79291 -14.44465 -13.53022 -13.41691 -13.06637 -12.95555 -12.91359 -12.74784 -12.10244 -12.03411 -11.61757 -11.27937 -11.09572 -11.01308 -10.90080 -10.75843 -10.17232 -8.66658 -8.51079 -6.29516 -0.09091 0.48243 1.24823 1.38744 1.57089 1.65634 1.71652 1.90349 1.92622 2.15063 2.46738 2.65707 2.95215 3.05106 3.35468 3.75842 3.91319 4.03353 4.18008 4.36187 4.48839 4.56389 4.63653 4.81784 4.94160 4.96418 5.19120 5.27684 5.89107 6.19519 6.42331 6.65433 6.88768 6.93937 7.05835 7.38280 7.58745 8.48324 Molecular weight = 278.08amu Principal moments of inertia in cm(-1) A = 0.067536 B = 0.003026 C = 0.002924 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 414.495188 B = 9252.433213 C = 9573.566903 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.822 5.822 2 C -0.006 4.006 3 Si 1.022 2.978 4 H -0.263 1.263 5 H -0.275 1.275 6 H -0.244 1.244 7 C -0.353 4.353 8 H 0.143 0.857 9 N -0.163 5.163 10 C -0.078 4.078 11 C -0.054 4.054 12 N -0.599 5.599 13 C 0.579 3.421 14 O -0.551 6.551 15 C -0.040 4.040 16 C -0.168 4.168 17 C -0.028 4.028 18 C 0.163 3.837 19 O -0.591 6.591 20 O 0.140 5.860 21 N -0.339 5.339 22 C -0.053 4.053 23 N -0.306 5.306 24 H 0.278 0.722 25 H 0.188 0.812 26 H 0.419 0.581 27 H 0.195 0.805 28 H 0.104 0.896 29 H 0.116 0.884 30 H 0.414 0.586 31 H 0.172 0.828 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.541 -22.109 1.058 22.188 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.449 5.449 2 C -0.218 4.218 3 Si 0.840 3.160 4 H -0.188 1.188 5 H -0.200 1.200 6 H -0.167 1.167 7 C -0.484 4.484 8 H 0.160 0.840 9 N 0.069 4.931 10 C -0.228 4.228 11 C -0.160 4.160 12 N -0.243 5.243 13 C 0.365 3.635 14 O -0.428 6.428 15 C -0.197 4.197 16 C -0.190 4.190 17 C -0.091 4.091 18 C 0.085 3.915 19 O -0.403 6.403 20 O 0.059 5.941 21 N -0.037 5.037 22 C -0.228 4.228 23 N -0.138 5.138 24 H 0.088 0.912 25 H 0.205 0.795 26 H 0.255 0.745 27 H 0.212 0.788 28 H 0.122 0.878 29 H 0.134 0.866 30 H 0.268 0.732 31 H 0.189 0.811 Dipole moment (debyes) X Y Z Total from point charges 1.636 -19.436 0.952 19.527 hybrid contribution -0.267 -0.609 0.036 0.666 sum 1.368 -20.045 0.989 20.116 Atomic orbital electron populations 1.70391 1.08462 1.29338 1.36724 1.26934 0.96524 1.04417 0.93973 0.84554 0.78282 0.73826 0.79298 1.18828 1.20031 1.16701 1.20686 0.93076 0.80751 1.53919 0.84005 1.44878 1.03694 1.04757 1.39750 1.21954 0.98732 0.84191 1.17938 1.17303 0.93494 0.82561 1.22671 1.42227 1.09277 1.03125 1.69645 1.17114 0.84237 0.83998 0.78191 1.90676 1.26693 1.73860 1.51581 1.23260 0.91431 0.95446 1.09571 1.22735 1.02279 0.89279 1.04744 1.24815 0.81948 0.99351 1.03021 1.20583 1.00397 0.85494 0.85048 1.86477 1.85904 1.42220 1.25674 1.84738 1.26566 1.18013 1.64739 1.74177 1.23241 0.90227 1.16027 1.24191 0.98858 0.90888 1.08879 1.78161 0.91887 1.16244 1.27524 0.91184 0.79496 0.74467 0.78774 0.87757 0.86633 0.73240 0.81141 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.82 -47.66 11.81 21.66 0.26 -47.40 16 2 C -0.01 -0.34 5.50 84.95 0.47 0.13 16 3 Si 1.02 38.71 29.55 68.60 2.03 40.74 16 4 H -0.26 -9.62 7.11 99.48 0.71 -8.91 16 5 H -0.28 -10.29 7.11 99.48 0.71 -9.59 16 6 H -0.24 -8.38 7.11 99.48 0.71 -7.68 16 7 C -0.35 -18.92 10.25 84.02 0.86 -18.06 16 8 H 0.14 6.57 7.83 -2.91 -0.02 6.55 16 9 N -0.16 -9.23 3.74 -189.99 -0.71 -9.94 16 10 C -0.08 -3.75 11.49 83.38 0.96 -2.79 16 11 C -0.05 -2.65 6.90 37.76 0.26 -2.39 16 12 N -0.60 -23.82 5.46 -306.15 -1.67 -25.49 16 13 C 0.58 22.96 7.82 86.92 0.68 23.64 16 14 O -0.55 -25.40 14.10 -3.80 -0.05 -25.45 16 15 C -0.04 -1.24 7.19 42.95 0.31 -0.93 16 16 C -0.17 -4.03 10.92 22.60 0.25 -3.78 16 17 C -0.03 -0.51 7.10 25.01 0.18 -0.33 16 18 C 0.16 1.23 7.60 71.23 0.54 1.77 16 19 O -0.59 -6.06 13.64 -148.98 -2.03 -8.09 16 20 O 0.14 3.17 11.18 71.87 0.80 3.97 16 21 N -0.34 -9.55 11.84 -49.51 -0.59 -10.13 16 22 C -0.05 -2.98 10.85 85.43 0.93 -2.05 16 23 N -0.31 -18.82 10.39 -56.45 -0.59 -19.41 16 24 H 0.28 14.78 8.31 -92.70 -0.77 14.01 16 25 H 0.19 7.24 8.06 -2.91 -0.02 7.22 16 26 H 0.42 13.83 8.58 -92.71 -0.80 13.03 16 27 H 0.20 4.04 8.06 -2.91 -0.02 4.02 16 28 H 0.10 0.22 8.14 -2.39 -0.02 0.20 16 29 H 0.12 0.25 8.14 -2.39 -0.02 0.23 16 30 H 0.41 -0.44 9.12 -74.06 -0.68 -1.12 16 31 H 0.17 9.55 5.92 -2.91 -0.02 9.53 16 Total: -1.00 -81.12 290.81 2.63 -78.50 By element: Atomic # 1 Polarization: 27.74 SS G_CDS: -0.25 Total: 27.50 kcal Atomic # 6 Polarization: -10.23 SS G_CDS: 5.43 Total: -4.80 kcal Atomic # 7 Polarization: -109.07 SS G_CDS: -3.30 Total: -112.37 kcal Atomic # 8 Polarization: -28.28 SS G_CDS: -1.28 Total: -29.57 kcal Atomic # 14 Polarization: 38.71 SS G_CDS: 2.03 Total: 40.74 kcal Total: -81.12 2.63 -78.50 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001583623044.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 120.997 kcal (2) G-P(sol) polarization free energy of solvation -81.123 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 39.873 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.628 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.495 kcal (6) G-S(sol) free energy of system = (1) + (5) 42.501 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds