Wall clock time and date at job start Tue Mar 31 2020 00:10:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17404 * 1 3 3 C 1.47199 * 179.97438 * 2 1 4 4 N 1.46498 * 109.47064 * 258.64890 * 3 2 1 5 5 C 1.37106 * 119.99891 * 264.10400 * 4 3 2 6 6 H 1.08002 * 120.00113 * 142.33526 * 5 4 3 7 7 C 1.38950 * 119.99606 * 322.34075 * 5 4 3 8 8 N 1.31412 * 119.99718 * 158.38540 * 7 5 4 9 9 Si 1.86795 * 120.00080 * 338.37145 * 7 5 4 10 10 H 1.48505 * 109.47117 * 95.70319 * 9 7 5 11 11 H 1.48498 * 109.47450 * 215.70216 * 9 7 5 12 12 H 1.48497 * 109.47690 * 335.70807 * 9 7 5 13 13 C 1.34770 * 120.00424 * 84.10462 * 4 3 2 14 14 O 1.21295 * 119.99998 * 359.97438 * 13 4 3 15 15 C 1.50702 * 120.00325 * 180.02562 * 13 4 3 16 16 N 1.46495 * 109.47304 * 180.02562 * 15 13 4 17 17 C 1.34785 * 126.59146 * 124.99295 * 16 15 13 18 18 C 1.36667 * 106.83988 * 180.23660 * 17 16 15 19 19 C 1.47386 * 125.78001 * 179.73765 * 18 17 16 20 20 O 1.21512 * 120.00175 * 0.02562 * 19 18 17 21 21 O 1.34747 * 119.99546 * 180.02562 * 19 18 17 22 22 N 1.34442 * 108.43366 * 359.61286 * 18 17 16 23 23 N 1.28754 * 109.51428 * 0.39804 * 22 18 17 24 24 H 4.40646 * 5.51437 * 179.97438 * 4 1 2 25 25 H 1.08998 * 109.47210 * 138.64678 * 3 2 1 26 26 H 1.08995 * 109.47168 * 18.64589 * 3 2 1 27 27 H 0.97001 * 119.99984 * 179.97438 * 8 7 5 28 28 H 1.08989 * 109.47516 * 59.99324 * 15 13 4 29 29 H 1.09004 * 109.46504 * 299.99609 * 15 13 4 30 30 H 1.08004 * 126.57465 * 359.97438 * 17 16 15 31 31 H 0.96705 * 116.99763 * 180.02562 * 21 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1740 0.0000 0.0000 3 6 2.6460 0.0007 0.0000 4 7 3.1342 0.2727 1.3542 5 6 3.4771 1.5501 1.7155 6 1 3.2542 1.9084 2.7097 7 6 4.1114 2.3837 0.8026 8 7 4.0653 3.6874 0.9609 9 14 5.0301 1.6511 -0.6496 10 1 4.1426 1.6360 -1.8401 11 1 6.2331 2.4720 -0.9395 12 1 5.4448 0.2630 -0.3238 13 6 3.2463 -0.7325 2.2448 14 8 2.9425 -1.8625 1.9253 15 6 3.7479 -0.4525 3.6380 16 7 3.7782 -1.6997 4.4060 17 6 4.8411 -2.2207 5.0506 18 6 4.4226 -3.3880 5.6251 19 6 5.2560 -4.3005 6.4282 20 8 6.4256 -4.0381 6.6276 21 8 4.7210 -5.4257 6.9412 22 7 3.1211 -3.5614 5.3359 23 7 2.7071 -2.5807 4.6117 24 1 -1.0501 0.0002 -0.0001 25 1 3.0090 0.7722 -0.6790 26 1 3.0098 -0.9729 -0.3285 27 1 4.5084 4.2694 0.3238 28 1 3.0836 0.2598 4.1271 29 1 4.7532 -0.0344 3.5849 30 1 5.8342 -1.7989 5.0998 31 1 5.3067 -5.9928 7.4614 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001588464927.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:10:11 Heat of formation + Delta-G solvation = 51.004827 kcal Electronic energy + Delta-G solvation = -20702.591615 eV Core-core repulsion = 17182.385660 eV Total energy + Delta-G solvation = -3520.205955 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 278.085 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -42.09182 -39.85782 -39.17735 -36.12732 -35.63349 -34.23085 -32.85296 -31.91365 -31.00413 -28.91478 -26.59532 -25.08969 -24.39270 -22.32512 -21.12367 -19.64585 -18.77758 -18.05571 -17.58088 -17.10304 -16.45668 -16.06867 -15.93018 -15.36007 -15.10421 -14.72785 -14.36880 -13.95155 -13.71761 -13.43324 -13.11938 -12.95450 -12.18571 -12.16618 -11.81257 -11.62723 -11.25340 -11.09754 -11.04267 -10.79794 -10.44383 -10.41914 -9.98802 -9.63870 -9.47453 -9.26275 -8.92152 -8.27944 -6.80685 -4.45928 1.14122 1.69899 2.10303 2.80746 2.98597 2.99144 3.04612 3.07913 3.08758 3.33099 3.41678 3.83768 4.10759 4.37923 4.57881 4.79989 4.83185 4.99822 5.14112 5.39353 5.46821 5.62621 5.83987 5.91531 6.01084 6.33805 6.42247 6.42318 6.93446 7.67793 7.77661 7.84412 8.15680 8.17754 8.54791 8.90117 9.23514 10.28545 Molecular weight = 278.08amu Principal moments of inertia in cm(-1) A = 0.023446 B = 0.004690 C = 0.004224 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1193.947798 B = 5968.932957 C = 6627.401249 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.218 4.218 2 C -0.170 4.170 3 C 0.206 3.794 4 N -0.450 5.450 5 C -0.367 4.367 6 H 0.108 0.892 7 C 0.075 3.925 8 N -0.842 5.842 9 Si 0.869 3.131 10 H -0.269 1.269 11 H -0.280 1.280 12 H -0.257 1.257 13 C 0.470 3.530 14 O -0.565 6.565 15 C 0.117 3.883 16 N -0.333 5.333 17 C 0.105 3.895 18 C -0.107 4.107 19 C 0.582 3.418 20 O -0.520 6.520 21 O -0.498 6.498 22 N -0.198 5.198 23 N -0.022 5.022 24 H 0.213 0.787 25 H 0.094 0.906 26 H 0.092 0.908 27 H 0.281 0.719 28 H 0.127 0.873 29 H 0.138 0.862 30 H 0.207 0.793 31 H 0.413 0.587 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.771 -6.646 5.287 8.933 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.236 4.236 2 C -0.172 4.172 3 C 0.084 3.916 4 N -0.171 5.171 5 C -0.494 4.494 6 H 0.126 0.874 7 C -0.135 4.135 8 N -0.475 5.475 9 Si 0.695 3.305 10 H -0.196 1.196 11 H -0.206 1.206 12 H -0.180 1.180 13 C 0.257 3.743 14 O -0.447 6.447 15 C -0.006 4.006 16 N -0.116 5.116 17 C -0.054 4.054 18 C -0.243 4.243 19 C 0.425 3.575 20 O -0.408 6.408 21 O -0.308 6.308 22 N -0.073 5.073 23 N -0.004 5.004 24 H 0.230 0.770 25 H 0.111 0.889 26 H 0.110 0.890 27 H 0.091 0.909 28 H 0.144 0.856 29 H 0.156 0.844 30 H 0.224 0.776 31 H 0.271 0.729 Dipole moment (debyes) X Y Z Total from point charges 1.285 -6.879 4.568 8.357 hybrid contribution 1.683 0.106 -0.416 1.737 sum 2.967 -6.773 4.152 8.481 Atomic orbital electron populations 1.24695 0.95663 1.02858 1.00378 1.23548 0.94755 0.98710 1.00145 1.18676 0.84194 1.02031 0.86708 1.43574 1.56087 1.07779 1.09664 1.19119 1.40746 0.86540 1.02948 0.87438 1.25338 0.95422 0.94764 0.98016 1.69754 1.38223 1.02691 1.36837 0.87040 0.80284 0.80801 0.82337 1.19594 1.20624 1.18041 1.19952 0.82481 0.84944 0.86893 1.90701 1.53386 1.21556 1.79106 1.21870 1.07115 0.80299 0.91349 1.50251 1.08126 1.19103 1.34084 1.23288 0.94955 0.93746 0.93375 1.20028 0.92932 0.98611 1.12777 1.19110 0.84034 0.78865 0.75516 1.90916 1.16974 1.74638 1.58275 1.84664 1.47369 1.33597 1.65164 1.74804 1.09012 1.16232 1.07244 1.82236 1.08188 0.95954 1.14017 0.76979 0.88862 0.88957 0.90897 0.85577 0.84441 0.77607 0.72917 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.22 -3.97 19.25 29.55 0.57 -3.40 16 2 C -0.17 -3.55 13.62 -37.12 -0.51 -4.05 16 3 C 0.21 4.34 4.42 -6.83 -0.03 4.31 16 4 N -0.45 -9.76 2.15 -117.94 -0.25 -10.01 16 5 C -0.37 -8.31 9.06 -14.93 -0.14 -8.44 16 6 H 0.11 2.46 7.23 -52.49 -0.38 2.08 16 7 C 0.08 1.75 5.28 -17.47 -0.09 1.65 16 8 N -0.84 -20.80 13.96 55.50 0.77 -20.02 16 9 Si 0.87 17.85 24.99 -169.99 -4.25 13.60 16 10 H -0.27 -5.40 6.70 56.52 0.38 -5.02 16 11 H -0.28 -5.73 7.11 56.52 0.40 -5.33 16 12 H -0.26 -5.24 7.11 56.52 0.40 -4.84 16 13 C 0.47 9.79 7.60 -10.99 -0.08 9.70 16 14 O -0.57 -13.40 15.41 5.54 0.09 -13.31 16 15 C 0.12 1.89 5.71 -5.20 -0.03 1.86 16 16 N -0.33 -5.53 3.41 -62.23 -0.21 -5.74 16 17 C 0.10 1.46 11.27 -16.82 -0.19 1.27 16 18 C -0.11 -1.67 7.02 -83.57 -0.59 -2.25 16 19 C 0.58 7.96 8.33 34.45 0.29 8.25 16 20 O -0.52 -7.64 17.65 -19.28 -0.34 -7.98 16 21 O -0.50 -5.53 13.43 -40.62 -0.55 -6.07 16 22 N -0.20 -3.60 12.39 32.83 0.41 -3.19 16 23 N -0.02 -0.43 12.88 60.35 0.78 0.35 16 24 H 0.21 2.90 7.80 -54.09 -0.42 2.48 16 25 H 0.09 1.95 3.55 -51.93 -0.18 1.77 16 26 H 0.09 1.88 7.61 -51.93 -0.39 1.48 16 27 H 0.28 6.46 8.31 -40.82 -0.34 6.13 16 28 H 0.13 1.88 7.67 -51.94 -0.40 1.48 16 29 H 0.14 1.81 8.04 -51.93 -0.42 1.39 16 30 H 0.21 2.02 8.06 -52.48 -0.42 1.60 16 31 H 0.41 2.20 9.11 45.56 0.42 2.62 16 LS Contribution 296.14 15.07 4.46 4.46 Total: -1.00 -31.94 296.14 -1.25 -33.19 By element: Atomic # 1 Polarization: 7.20 SS G_CDS: -1.36 Total: 5.83 kcal Atomic # 6 Polarization: 9.69 SS G_CDS: -0.80 Total: 8.90 kcal Atomic # 7 Polarization: -40.11 SS G_CDS: 1.49 Total: -38.62 kcal Atomic # 8 Polarization: -26.57 SS G_CDS: -0.80 Total: -27.37 kcal Atomic # 14 Polarization: 17.85 SS G_CDS: -4.25 Total: 13.60 kcal Total LS contribution 4.46 Total: 4.46 kcal Total: -31.94 -1.25 -33.19 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001588464927.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 84.194 kcal (2) G-P(sol) polarization free energy of solvation -31.938 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 52.256 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.252 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -33.190 kcal (6) G-S(sol) free energy of system = (1) + (5) 51.005 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds