Wall clock time and date at job start Tue Mar 31 2020 00:10:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17404 * 1 3 3 C 1.47199 * 179.97438 * 2 1 4 4 N 1.46498 * 109.47064 * 258.64890 * 3 2 1 5 5 C 1.37106 * 119.99891 * 264.10400 * 4 3 2 6 6 H 1.08002 * 120.00113 * 142.33526 * 5 4 3 7 7 C 1.38950 * 119.99606 * 322.34075 * 5 4 3 8 8 N 1.31412 * 119.99718 * 158.38540 * 7 5 4 9 9 Si 1.86795 * 120.00080 * 338.37145 * 7 5 4 10 10 H 1.48505 * 109.47117 * 95.70319 * 9 7 5 11 11 H 1.48498 * 109.47450 * 215.70216 * 9 7 5 12 12 H 1.48497 * 109.47690 * 335.70807 * 9 7 5 13 13 C 1.34770 * 120.00424 * 84.10462 * 4 3 2 14 14 O 1.21295 * 119.99998 * 359.97438 * 13 4 3 15 15 C 1.50702 * 120.00325 * 180.02562 * 13 4 3 16 16 N 1.46495 * 109.47304 * 180.02562 * 15 13 4 17 17 C 1.34785 * 126.59146 * 124.99295 * 16 15 13 18 18 C 1.36667 * 106.83988 * 180.23660 * 17 16 15 19 19 C 1.47386 * 125.78001 * 179.73765 * 18 17 16 20 20 O 1.21512 * 120.00175 * 0.02562 * 19 18 17 21 21 O 1.34747 * 119.99546 * 180.02562 * 19 18 17 22 22 N 1.34442 * 108.43366 * 359.61286 * 18 17 16 23 23 N 1.28754 * 109.51428 * 0.39804 * 22 18 17 24 24 H 4.40646 * 5.51437 * 179.97438 * 4 1 2 25 25 H 1.08998 * 109.47210 * 138.64678 * 3 2 1 26 26 H 1.08995 * 109.47168 * 18.64589 * 3 2 1 27 27 H 0.97001 * 119.99984 * 179.97438 * 8 7 5 28 28 H 1.08989 * 109.47516 * 59.99324 * 15 13 4 29 29 H 1.09004 * 109.46504 * 299.99609 * 15 13 4 30 30 H 1.08004 * 126.57465 * 359.97438 * 17 16 15 31 31 H 0.96705 * 116.99763 * 180.02562 * 21 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1740 0.0000 0.0000 3 6 2.6460 0.0007 0.0000 4 7 3.1342 0.2727 1.3542 5 6 3.4771 1.5501 1.7155 6 1 3.2542 1.9084 2.7097 7 6 4.1114 2.3837 0.8026 8 7 4.0653 3.6874 0.9609 9 14 5.0301 1.6511 -0.6496 10 1 4.1426 1.6360 -1.8401 11 1 6.2331 2.4720 -0.9395 12 1 5.4448 0.2630 -0.3238 13 6 3.2463 -0.7325 2.2448 14 8 2.9425 -1.8625 1.9253 15 6 3.7479 -0.4525 3.6380 16 7 3.7782 -1.6997 4.4060 17 6 4.8411 -2.2207 5.0506 18 6 4.4226 -3.3880 5.6251 19 6 5.2560 -4.3005 6.4282 20 8 6.4256 -4.0381 6.6276 21 8 4.7210 -5.4257 6.9412 22 7 3.1211 -3.5614 5.3359 23 7 2.7071 -2.5807 4.6117 24 1 -1.0501 0.0002 -0.0001 25 1 3.0090 0.7722 -0.6790 26 1 3.0098 -0.9729 -0.3285 27 1 4.5084 4.2694 0.3238 28 1 3.0836 0.2598 4.1271 29 1 4.7532 -0.0344 3.5849 30 1 5.8342 -1.7989 5.0998 31 1 5.3067 -5.9928 7.4614 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001588464927.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:10:10 Heat of formation + Delta-G solvation = 26.932352 kcal Electronic energy + Delta-G solvation = -20703.635476 eV Core-core repulsion = 17182.385660 eV Total energy + Delta-G solvation = -3521.249816 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 278.085 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -43.32467 -40.98563 -40.70719 -37.28537 -37.10411 -35.59018 -34.49224 -33.56249 -32.20823 -30.30862 -28.13179 -26.76288 -25.53998 -23.62315 -22.28067 -21.18201 -20.32050 -19.28839 -18.77017 -18.47342 -17.95823 -17.50280 -17.18303 -16.68619 -16.45764 -16.18591 -15.66123 -15.43632 -15.04258 -14.83373 -14.58740 -14.50214 -13.83596 -13.58355 -13.07834 -12.90912 -12.71418 -12.59369 -12.38186 -12.04446 -11.88805 -11.78038 -11.55440 -11.30783 -11.03506 -10.62978 -10.42533 -10.02063 -8.58436 -6.25095 0.03102 0.44583 0.90523 1.18380 1.33611 1.42915 1.53138 1.74850 1.89049 1.95515 2.00705 2.14744 2.62095 2.85613 3.22961 3.52344 3.61590 3.79119 3.90543 4.07946 4.19315 4.23664 4.39794 4.46550 4.75106 5.02284 5.22942 5.26458 5.48425 5.95395 6.09237 6.66414 6.79753 6.82152 7.04636 7.19246 7.56311 8.53721 Molecular weight = 278.08amu Principal moments of inertia in cm(-1) A = 0.023446 B = 0.004690 C = 0.004224 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1193.947798 B = 5968.932957 C = 6627.401249 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.184 4.184 2 C -0.233 4.233 3 C 0.201 3.799 4 N -0.458 5.458 5 C -0.360 4.360 6 H 0.101 0.899 7 C 0.044 3.956 8 N -0.879 5.879 9 Si 0.912 3.088 10 H -0.265 1.265 11 H -0.278 1.278 12 H -0.256 1.256 13 C 0.466 3.534 14 O -0.597 6.597 15 C 0.123 3.877 16 N -0.338 5.338 17 C 0.123 3.877 18 C -0.121 4.121 19 C 0.591 3.409 20 O -0.531 6.531 21 O -0.498 6.498 22 N -0.214 5.214 23 N -0.070 5.070 24 H 0.256 0.744 25 H 0.091 0.909 26 H 0.091 0.909 27 H 0.284 0.716 28 H 0.138 0.862 29 H 0.173 0.827 30 H 0.250 0.750 31 H 0.437 0.563 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.384 -7.043 5.719 9.683 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.234 4.234 3 C 0.080 3.920 4 N -0.179 5.179 5 C -0.487 4.487 6 H 0.119 0.881 7 C -0.163 4.163 8 N -0.514 5.514 9 Si 0.737 3.263 10 H -0.192 1.192 11 H -0.204 1.204 12 H -0.180 1.180 13 C 0.255 3.745 14 O -0.481 6.481 15 C 0.000 4.000 16 N -0.121 5.121 17 C -0.034 4.034 18 C -0.259 4.259 19 C 0.434 3.566 20 O -0.420 6.420 21 O -0.311 6.311 22 N -0.089 5.089 23 N -0.051 5.051 24 H 0.272 0.728 25 H 0.108 0.892 26 H 0.109 0.891 27 H 0.094 0.906 28 H 0.156 0.844 29 H 0.190 0.810 30 H 0.266 0.734 31 H 0.300 0.700 Dipole moment (debyes) X Y Z Total from point charges 1.890 -7.302 5.014 9.057 hybrid contribution 1.426 0.133 -0.487 1.513 sum 3.317 -7.169 4.527 9.104 Atomic orbital electron populations 1.25728 0.96623 1.00131 0.97668 1.23864 0.95571 1.01281 1.02710 1.18645 0.85053 1.01779 0.86551 1.43689 1.56411 1.07658 1.10134 1.19098 1.40144 0.86757 1.02665 0.88113 1.25780 0.95890 0.94790 0.99868 1.69808 1.39700 1.03676 1.38233 0.86348 0.79410 0.80089 0.80429 1.19151 1.20364 1.17991 1.20653 0.81423 0.84182 0.88274 1.90680 1.54531 1.22785 1.80102 1.21943 1.09061 0.80452 0.88498 1.50257 1.08403 1.19012 1.34418 1.24017 0.95626 0.92691 0.91106 1.20519 0.92421 0.99705 1.13239 1.18801 0.83459 0.79145 0.75222 1.90915 1.17190 1.75091 1.58806 1.84613 1.48160 1.33100 1.65198 1.74754 1.10505 1.16298 1.07325 1.82196 1.09851 0.97234 1.15817 0.72807 0.89180 0.89124 0.90620 0.84410 0.81019 0.73358 0.70004 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -6.35 19.25 74.32 1.43 -4.92 16 2 C -0.23 -9.59 13.62 31.12 0.42 -9.16 16 3 C 0.20 8.49 4.42 84.57 0.37 8.86 16 4 N -0.46 -19.63 2.15 -645.43 -1.39 -21.02 16 5 C -0.36 -16.07 9.06 84.04 0.76 -15.31 16 6 H 0.10 4.55 7.23 -2.91 -0.02 4.53 16 7 C 0.04 2.03 5.28 84.93 0.45 2.48 16 8 N -0.88 -43.28 13.96 21.66 0.30 -42.97 16 9 Si 0.91 36.19 24.99 68.60 1.71 37.91 16 10 H -0.27 -10.25 6.70 99.48 0.67 -9.59 16 11 H -0.28 -10.81 7.11 99.48 0.71 -10.10 16 12 H -0.26 -10.04 7.11 99.48 0.71 -9.34 16 13 C 0.47 19.10 7.60 87.66 0.67 19.76 16 14 O -0.60 -28.29 15.41 -3.08 -0.05 -28.34 16 15 C 0.12 3.78 5.71 85.63 0.49 4.27 16 16 N -0.34 -10.73 3.41 -350.81 -1.20 -11.92 16 17 C 0.12 3.15 11.27 83.87 0.95 4.10 16 18 C -0.12 -3.59 7.02 40.79 0.29 -3.30 16 19 C 0.59 14.96 8.33 70.23 0.59 15.55 16 20 O -0.53 -14.29 17.65 19.80 0.35 -13.94 16 21 O -0.50 -10.02 13.43 -56.58 -0.76 -10.79 16 22 N -0.21 -7.70 12.39 -50.03 -0.62 -8.32 16 23 N -0.07 -2.69 12.88 37.02 0.48 -2.22 16 24 H 0.26 6.02 7.80 -4.41 -0.03 5.99 16 25 H 0.09 3.76 3.55 -2.39 -0.01 3.75 16 26 H 0.09 3.73 7.61 -2.39 -0.02 3.71 16 27 H 0.28 13.05 8.31 -92.71 -0.77 12.28 16 28 H 0.14 3.91 7.67 -2.39 -0.02 3.89 16 29 H 0.17 4.02 8.04 -2.39 -0.02 4.00 16 30 H 0.25 3.87 8.06 -2.91 -0.02 3.85 16 31 H 0.44 3.57 9.11 -74.05 -0.67 2.89 16 Total: -1.00 -69.17 296.14 5.73 -63.44 By element: Atomic # 1 Polarization: 15.38 SS G_CDS: 0.49 Total: 15.87 kcal Atomic # 6 Polarization: 15.90 SS G_CDS: 6.41 Total: 22.31 kcal Atomic # 7 Polarization: -84.03 SS G_CDS: -2.43 Total: -86.45 kcal Atomic # 8 Polarization: -52.61 SS G_CDS: -0.46 Total: -53.07 kcal Atomic # 14 Polarization: 36.19 SS G_CDS: 1.71 Total: 37.91 kcal Total: -69.17 5.73 -63.44 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001588464927.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 90.370 kcal (2) G-P(sol) polarization free energy of solvation -69.171 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 21.199 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.733 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.438 kcal (6) G-S(sol) free energy of system = (1) + (5) 26.932 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds