Wall clock time and date at job start Tue Mar 31 2020 01:04:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50696 * 1 3 3 C 1.36398 * 120.25558 * 2 1 4 4 C 1.48352 * 120.83483 * 0.02562 * 3 2 1 5 5 N 1.33710 * 126.31213 * 0.04817 * 4 3 2 6 6 N 1.28570 * 109.84767 * 180.02562 * 5 4 3 7 7 N 1.28920 * 109.72730 * 359.97438 * 6 5 4 8 8 H 0.96999 * 126.42613 * 179.97438 * 7 6 5 9 9 N 1.32023 * 126.31240 * 179.73514 * 4 3 2 10 10 C 1.46754 * 118.32986 * 180.02562 * 3 2 1 11 11 O 1.21742 * 120.65437 * 180.02562 * 10 3 2 12 12 N 1.34958 * 118.68909 * 0.02562 * 10 3 2 13 13 C 1.37295 * 119.84407 * 179.97438 * 12 10 3 14 14 H 1.07993 * 120.00321 * 226.36499 * 13 12 10 15 15 C 1.39001 * 119.99399 * 46.08440 * 13 12 10 16 16 N 1.31326 * 119.99546 * 212.42878 * 15 13 12 17 17 Si 1.86798 * 120.00423 * 32.42710 * 15 13 12 18 18 H 1.48500 * 109.46681 * 91.79877 * 17 15 13 19 19 H 1.48499 * 109.47355 * 211.79904 * 17 15 13 20 20 H 1.48500 * 109.46947 * 331.80110 * 17 15 13 21 21 C 1.34466 * 120.31915 * 0.24910 * 12 10 3 22 22 O 1.21578 * 119.08531 * 179.74964 * 21 12 10 23 23 N 1.34295 * 121.83053 * 359.47633 * 21 12 10 24 24 C 1.46496 * 119.32485 * 180.29042 * 23 21 12 25 25 H 1.08997 * 109.47509 * 55.91811 * 1 2 3 26 26 H 1.09005 * 109.47047 * 175.91773 * 1 2 3 27 27 H 1.08999 * 109.47326 * 295.91244 * 1 2 3 28 28 H 0.97005 * 119.99757 * 180.02562 * 16 15 13 29 29 H 1.09002 * 109.47333 * 265.64900 * 24 23 21 30 30 H 1.08998 * 109.47382 * 25.65132 * 24 23 21 31 31 H 1.09006 * 109.46661 * 145.64861 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1942 1.1782 0.0000 4 6 1.4770 2.4768 0.0006 5 7 0.1511 2.6491 0.0020 6 7 -0.1260 3.9046 0.0016 7 7 0.9652 4.5911 0.0004 8 1 1.0372 5.5584 -0.0005 9 7 2.0303 3.6755 0.0055 10 6 3.6609 1.1289 -0.0006 11 8 4.3165 2.1547 -0.0001 12 7 4.2686 -0.0761 -0.0016 13 6 5.6396 -0.1499 -0.0027 14 1 6.1436 -0.8230 -0.6803 15 6 6.3790 0.6461 0.8643 16 7 7.5636 1.0841 0.5045 17 14 5.6878 1.0929 2.5412 18 1 6.1307 0.0896 3.5424 19 1 6.1789 2.4373 2.9369 20 1 4.2042 1.1069 2.4773 21 6 3.5379 -1.2049 -0.0071 22 8 4.1087 -2.2784 -0.0126 23 7 2.1952 -1.1795 -0.0014 24 6 1.4537 -2.4429 -0.0014 25 1 -0.3634 0.5759 -0.8511 26 1 -0.3633 -1.0251 -0.0732 27 1 -0.3634 0.4491 0.9243 28 1 8.0798 1.6393 1.1097 29 1 1.1981 -2.7142 -1.0257 30 1 2.0705 -3.2263 0.4388 31 1 0.5405 -2.3282 0.5827 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001591795136.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:04:51 Heat of formation + Delta-G solvation = 117.415414 kcal Electronic energy + Delta-G solvation = -22213.224835 eV Core-core repulsion = 18728.191410 eV Total energy + Delta-G solvation = -3485.033425 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 278.091 amu Computer time = 1.17 seconds Orbital eigenvalues (eV) -42.91991 -41.40073 -38.03389 -37.08033 -34.26257 -33.90056 -32.67372 -32.38468 -31.22236 -29.21002 -26.66447 -25.09862 -24.36581 -23.22646 -21.89568 -21.32174 -19.15601 -18.37226 -17.82958 -16.61862 -16.28662 -15.99887 -15.81572 -15.02609 -14.42129 -14.17291 -13.92887 -13.90098 -13.39423 -13.24478 -12.76690 -12.63239 -12.57545 -12.43350 -12.05834 -11.57945 -11.27192 -11.05734 -10.78995 -10.58707 -10.53967 -10.35289 -10.17559 -9.79830 -9.13150 -8.97578 -8.25372 -7.83138 -6.59769 -4.29415 0.93711 1.45667 2.32461 2.58533 2.71696 3.02276 3.21519 3.29280 3.31039 3.83602 4.11148 4.17609 4.42863 4.52627 4.65945 4.93526 5.04132 5.20623 5.35483 5.48886 5.62838 5.70092 5.77830 5.82494 5.99235 6.18372 6.58275 6.72185 6.90795 7.34641 7.84726 8.22277 8.35757 8.56279 8.72449 9.07234 9.40339 10.46979 Molecular weight = 278.09amu Principal moments of inertia in cm(-1) A = 0.016175 B = 0.009609 C = 0.006635 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1730.600477 B = 2913.094485 C = 4219.039420 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.120 4.120 2 C 0.232 3.768 3 C -0.217 4.217 4 C 0.289 3.711 5 N -0.310 5.310 6 N -0.006 5.006 7 N -0.308 5.308 8 H 0.466 0.534 9 N -0.255 5.255 10 C 0.525 3.475 11 O -0.488 6.488 12 N -0.389 5.389 13 C -0.360 4.360 14 H 0.115 0.885 15 C 0.118 3.882 16 N -0.811 5.811 17 Si 0.883 3.117 18 H -0.278 1.278 19 H -0.275 1.275 20 H -0.271 1.271 21 C 0.644 3.356 22 O -0.545 6.545 23 N -0.527 5.527 24 C 0.072 3.928 25 H 0.104 0.896 26 H 0.077 0.923 27 H 0.099 0.901 28 H 0.281 0.719 29 H 0.072 0.928 30 H 0.098 0.902 31 H 0.085 0.915 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.801 0.723 0.366 16.820 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.177 4.177 2 C 0.118 3.882 3 C -0.232 4.232 4 C 0.009 3.991 5 N -0.189 5.189 6 N -0.002 5.002 7 N -0.155 5.155 8 H 0.319 0.681 9 N -0.098 5.098 10 C 0.318 3.682 11 O -0.362 6.362 12 N -0.120 5.120 13 C -0.484 4.484 14 H 0.133 0.867 15 C -0.098 4.098 16 N -0.441 5.441 17 Si 0.708 3.292 18 H -0.204 1.204 19 H -0.200 1.200 20 H -0.195 1.195 21 C 0.351 3.649 22 O -0.419 6.419 23 N -0.245 5.245 24 C -0.069 4.069 25 H 0.122 0.878 26 H 0.096 0.904 27 H 0.117 0.883 28 H 0.092 0.908 29 H 0.091 0.909 30 H 0.116 0.884 31 H 0.104 0.896 Dipole moment (debyes) X Y Z Total from point charges -16.197 1.061 0.382 16.236 hybrid contribution 0.220 0.725 0.845 1.135 sum -15.977 1.786 1.228 16.123 Atomic orbital electron populations 1.21266 0.86707 1.03697 1.06028 1.20721 0.95031 0.84500 0.87982 1.18303 0.92547 0.86699 1.25698 1.22550 0.87663 0.92221 0.96708 1.75477 1.13691 1.07026 1.22746 1.78166 1.13055 0.98918 1.10097 1.51157 1.01283 1.12342 1.50742 0.68074 1.79487 1.07976 0.98359 1.23951 1.18024 0.86040 0.84872 0.79236 1.90772 1.65944 1.32086 1.47431 1.42106 1.08343 1.03150 1.58388 1.18742 0.75510 1.29334 1.24825 0.86710 1.25106 0.94529 0.92219 0.97987 1.69813 1.12893 1.26317 1.35044 0.86652 0.80540 0.78107 0.83878 1.20427 1.19998 1.19519 1.16809 0.79773 0.86903 0.81430 1.90858 1.68065 1.27781 1.55240 1.44831 1.06388 1.06819 1.66489 1.22057 0.96886 0.84569 1.03412 0.87802 0.90414 0.88301 0.90847 0.90922 0.88353 0.89647 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.30 8.09 36.00 0.29 -1.01 16 2 C 0.23 3.76 6.71 -81.15 -0.54 3.22 16 3 C -0.22 -4.41 6.03 -102.96 -0.62 -5.03 16 4 C 0.29 5.41 7.83 -156.44 -1.22 4.19 16 5 N -0.31 -4.81 9.22 32.11 0.30 -4.51 16 6 N -0.01 -0.09 13.42 60.35 0.81 0.72 16 7 N -0.31 -4.13 8.44 60.35 0.51 -3.62 16 8 H 0.47 3.94 8.96 -331.92 -2.98 0.96 16 9 N -0.25 -4.84 11.78 32.13 0.38 -4.46 16 10 C 0.53 13.33 5.64 -12.74 -0.07 13.26 16 11 O -0.49 -13.76 13.38 5.15 0.07 -13.69 16 12 N -0.39 -10.23 2.15 -67.03 -0.14 -10.37 16 13 C -0.36 -10.55 8.77 -14.82 -0.13 -10.68 16 14 H 0.12 3.56 8.03 -52.49 -0.42 3.14 16 15 C 0.12 3.43 4.44 -17.49 -0.08 3.35 16 16 N -0.81 -23.94 13.95 55.50 0.77 -23.17 16 17 Si 0.88 23.07 26.63 -169.99 -4.53 18.54 16 18 H -0.28 -6.94 7.11 56.52 0.40 -6.54 16 19 H -0.27 -7.08 7.11 56.52 0.40 -6.68 16 20 H -0.27 -7.12 6.24 56.52 0.35 -6.76 16 21 C 0.64 14.87 8.06 -87.63 -0.71 14.17 16 22 O -0.54 -13.59 15.54 5.30 0.08 -13.51 16 23 N -0.53 -9.12 3.00 -124.15 -0.37 -9.49 16 24 C 0.07 0.84 9.56 59.84 0.57 1.41 16 25 H 0.10 1.12 7.15 -51.93 -0.37 0.74 16 26 H 0.08 0.58 5.60 -51.93 -0.29 0.29 16 27 H 0.10 1.04 7.66 -51.93 -0.40 0.65 16 28 H 0.28 7.64 8.31 -40.82 -0.34 7.30 16 29 H 0.07 0.70 8.14 -51.93 -0.42 0.27 16 30 H 0.10 1.24 7.19 -51.93 -0.37 0.87 16 31 H 0.09 0.66 6.28 -51.93 -0.33 0.34 16 LS Contribution 270.41 15.07 4.08 4.08 Total: -1.00 -36.71 270.41 -5.32 -42.03 By element: Atomic # 1 Polarization: -0.66 SS G_CDS: -4.76 Total: -5.42 kcal Atomic # 6 Polarization: 25.39 SS G_CDS: -2.51 Total: 22.88 kcal Atomic # 7 Polarization: -57.15 SS G_CDS: 2.25 Total: -54.90 kcal Atomic # 8 Polarization: -27.35 SS G_CDS: 0.15 Total: -27.20 kcal Atomic # 14 Polarization: 23.07 SS G_CDS: -4.53 Total: 18.54 kcal Total LS contribution 4.08 Total: 4.08 kcal Total: -36.71 -5.32 -42.03 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001591795136.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 159.447 kcal (2) G-P(sol) polarization free energy of solvation -36.709 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 122.738 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.323 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.032 kcal (6) G-S(sol) free energy of system = (1) + (5) 117.415 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.17 seconds