Wall clock time and date at job start Tue Mar 31 2020 00:16:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46499 * 1 3 3 N 1.28455 * 125.06307 * 2 1 4 4 C 1.32003 * 110.51085 * 179.97438 * 3 2 1 5 5 C 1.47635 * 126.26942 * 179.97438 * 4 3 2 6 6 O 1.21490 * 120.00181 * 180.02562 * 5 4 3 7 7 O 1.34718 * 120.00231 * 0.02562 * 5 4 3 8 8 C 1.40932 * 107.46362 * 359.97438 * 4 3 2 9 9 C 1.36801 * 125.06195 * 179.97438 * 2 1 3 10 10 C 1.47073 * 126.65141 * 359.97438 * 9 2 1 11 11 O 1.21663 * 120.00154 * 22.92714 * 10 9 2 12 12 N 1.34776 * 119.99904 * 202.92784 * 10 9 2 13 13 C 1.36855 * 119.99935 * 186.09517 * 12 10 9 14 14 H 1.08003 * 119.99794 * 22.97250 * 13 12 10 15 15 C 1.39042 * 119.99882 * 202.97834 * 13 12 10 16 16 N 1.31368 * 120.00332 * 16.04990 * 15 13 12 17 17 Si 1.86803 * 120.00036 * 196.05277 * 15 13 12 18 18 H 1.48500 * 109.47106 * 89.99716 * 17 15 13 19 19 H 1.48502 * 109.47488 * 210.00224 * 17 15 13 20 20 H 1.48502 * 109.46880 * 329.99855 * 17 15 13 21 21 C 1.46498 * 120.00195 * 6.09383 * 12 10 9 22 22 C 1.47194 * 109.47419 * 55.11792 * 21 12 10 23 23 N 3.94004 * 120.91319 * 116.01965 * 2 1 3 24 24 H 1.09004 * 109.46987 * 95.86061 * 1 2 3 25 25 H 1.09001 * 109.47325 * 215.85726 * 1 2 3 26 26 H 1.09000 * 109.47233 * 335.86538 * 1 2 3 27 27 H 0.96695 * 117.00275 * 180.02562 * 7 5 4 28 28 H 1.07999 * 127.27623 * 180.02562 * 8 4 3 29 29 H 0.97000 * 120.00289 * 179.97438 * 16 15 13 30 30 H 1.09006 * 109.47220 * 175.11995 * 21 12 10 31 31 H 1.09000 * 109.46920 * 295.11759 * 21 12 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 7 2.2029 1.0514 0.0000 4 6 3.4806 0.7198 0.0006 5 6 4.6251 1.6524 0.0002 6 8 5.7606 1.2206 0.0003 7 8 4.4102 2.9824 -0.0003 8 6 3.5522 -0.6877 0.0015 9 6 2.2509 -1.1198 0.0005 10 6 1.7894 -2.5162 0.0017 11 8 0.6770 -2.7897 -0.4082 12 7 2.5988 -3.4930 0.4568 13 6 2.2207 -4.8034 0.3432 14 1 1.4985 -5.0941 -0.4054 15 6 2.7661 -5.7604 1.1917 16 7 3.3873 -5.3887 2.2880 17 14 2.6157 -7.5746 0.7728 18 1 3.7835 -7.9925 -0.0437 19 1 2.5775 -8.3705 2.0259 20 1 1.3664 -7.8029 0.0032 21 6 3.8835 -3.1522 1.0729 22 6 3.6612 -2.2100 2.1818 23 7 3.4891 -1.4829 3.0377 24 1 -0.3633 -0.1049 -1.0223 25 1 -0.3634 -0.8329 0.6020 26 1 -0.3634 0.9378 0.4202 27 1 5.1907 3.5532 -0.0009 28 1 4.4437 -1.2974 0.0026 29 1 3.7674 -6.0564 2.8801 30 1 4.3551 -4.0578 1.4546 31 1 4.5323 -2.6907 0.3286 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001594564152.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:16:03 Heat of formation + Delta-G solvation = 14.824950 kcal Electronic energy + Delta-G solvation = -21597.711478 eV Core-core repulsion = 18075.936645 eV Total energy + Delta-G solvation = -3521.774832 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 278.085 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -42.45586 -39.75705 -38.80265 -36.16503 -35.96770 -34.74747 -33.26296 -32.24210 -30.60277 -27.84294 -27.59717 -25.42778 -23.87784 -22.30820 -20.92648 -19.63827 -18.12368 -17.71152 -17.49716 -16.36758 -16.22498 -16.00879 -15.79496 -15.22509 -14.80137 -14.24490 -14.11421 -13.65684 -13.32311 -13.07511 -12.78084 -12.51813 -12.24967 -12.13919 -11.93473 -11.63718 -11.49847 -11.35420 -10.94423 -10.78486 -10.76449 -10.53477 -10.33437 -9.55695 -9.10936 -9.03711 -8.82261 -8.13429 -6.67385 -4.29493 1.43881 1.77194 2.43481 3.01701 3.07872 3.13535 3.18204 3.27369 3.37005 3.61872 3.85969 3.90186 4.43228 4.54610 4.71563 4.89221 5.23281 5.26036 5.35658 5.40293 5.63817 5.73187 5.78780 6.11866 6.45472 6.46605 6.67975 6.79096 7.24384 7.60874 7.84649 8.03642 8.13718 8.37427 8.69246 8.89223 9.42424 10.30365 Molecular weight = 278.08amu Principal moments of inertia in cm(-1) A = 0.024293 B = 0.005903 C = 0.005205 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1152.306240 B = 4742.219281 C = 5378.354913 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.093 3.907 2 N -0.247 5.247 3 N -0.226 5.226 4 C -0.018 4.018 5 C 0.579 3.421 6 O -0.508 6.508 7 O -0.503 6.503 8 C -0.161 4.161 9 C 0.005 3.995 10 C 0.508 3.492 11 O -0.569 6.569 12 N -0.410 5.410 13 C -0.296 4.296 14 H 0.114 0.886 15 C 0.029 3.971 16 N -0.869 5.869 17 Si 0.940 3.060 18 H -0.272 1.272 19 H -0.281 1.281 20 H -0.266 1.266 21 C 0.168 3.832 22 C 0.226 3.774 23 N -0.457 5.457 24 H 0.091 0.909 25 H 0.104 0.896 26 H 0.093 0.907 27 H 0.411 0.589 28 H 0.178 0.822 29 H 0.279 0.721 30 H 0.177 0.823 31 H 0.090 0.910 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.491 6.879 -4.461 8.333 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.047 4.047 2 N -0.038 5.038 3 N -0.067 5.067 4 C -0.173 4.173 5 C 0.421 3.579 6 O -0.394 6.394 7 O -0.314 6.314 8 C -0.190 4.190 9 C -0.121 4.121 10 C 0.296 3.704 11 O -0.453 6.453 12 N -0.128 5.128 13 C -0.424 4.424 14 H 0.132 0.868 15 C -0.175 4.175 16 N -0.508 5.508 17 Si 0.765 3.235 18 H -0.197 1.197 19 H -0.207 1.207 20 H -0.190 1.190 21 C 0.042 3.958 22 C -0.092 4.092 23 N -0.136 5.136 24 H 0.109 0.891 25 H 0.123 0.877 26 H 0.111 0.889 27 H 0.269 0.731 28 H 0.195 0.805 29 H 0.090 0.910 30 H 0.193 0.807 31 H 0.107 0.893 Dipole moment (debyes) X Y Z Total from point charges -0.093 8.228 -3.231 8.840 hybrid contribution 1.072 -1.263 -0.256 1.676 sum 0.978 6.965 -3.487 7.851 Atomic orbital electron populations 1.22287 0.71969 1.05155 1.05277 1.45709 1.08164 1.01802 1.48114 1.73568 1.02728 1.13454 1.16911 1.20355 0.89696 0.92183 1.15047 1.19240 0.86544 0.80458 0.71625 1.90904 1.23151 1.78646 1.46721 1.84650 1.43159 1.17907 1.85655 1.22394 0.97259 0.92706 1.06591 1.21650 0.90194 0.91115 1.09178 1.16739 0.85376 0.81735 0.86595 1.90669 1.19327 1.82426 1.52889 1.43282 1.14301 1.05690 1.49576 1.19873 1.25923 0.79725 1.16843 0.86838 1.25487 0.96730 1.01619 0.93665 1.69609 1.35777 1.35534 1.09861 0.85693 0.79377 0.80236 0.78189 1.19734 1.20672 1.19042 1.19997 0.88336 0.99147 0.88307 1.29483 0.93338 0.92206 0.94198 1.80995 1.07524 1.12583 1.12508 0.89053 0.87749 0.88851 0.73073 0.80473 0.90980 0.80741 0.89257 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 1.34 10.48 59.85 0.63 1.97 16 2 N -0.25 -4.51 3.75 -64.20 -0.24 -4.75 16 3 N -0.23 -4.13 11.97 33.32 0.40 -3.73 16 4 C -0.02 -0.33 7.13 -82.94 -0.59 -0.92 16 5 C 0.58 9.45 8.34 34.57 0.29 9.74 16 6 O -0.51 -9.00 17.70 -19.26 -0.34 -9.34 16 7 O -0.50 -6.40 13.44 -40.54 -0.54 -6.94 16 8 C -0.16 -3.02 7.71 -38.97 -0.30 -3.32 16 9 C 0.00 0.10 5.80 -82.47 -0.48 -0.38 16 10 C 0.51 11.46 7.13 -12.68 -0.09 11.37 16 11 O -0.57 -13.91 15.19 5.22 0.08 -13.83 16 12 N -0.41 -9.28 2.80 -119.29 -0.33 -9.61 16 13 C -0.30 -7.05 9.23 -15.01 -0.14 -7.18 16 14 H 0.11 2.78 7.50 -52.48 -0.39 2.39 16 15 C 0.03 0.65 5.07 -17.45 -0.09 0.56 16 16 N -0.87 -20.11 10.49 55.50 0.58 -19.53 16 17 Si 0.94 17.87 29.58 -169.99 -5.03 12.84 16 18 H -0.27 -5.02 7.11 56.52 0.40 -4.62 16 19 H -0.28 -5.41 7.11 56.52 0.40 -5.01 16 20 H -0.27 -5.13 7.11 56.52 0.40 -4.73 16 21 C 0.17 3.36 4.94 -6.83 -0.03 3.33 16 22 C 0.23 4.87 11.92 -20.76 -0.25 4.62 16 23 N -0.46 -10.49 18.54 42.16 0.78 -9.71 16 24 H 0.09 1.17 8.14 -51.93 -0.42 0.75 16 25 H 0.10 1.63 7.27 -51.93 -0.38 1.25 16 26 H 0.09 1.07 8.14 -51.93 -0.42 0.65 16 27 H 0.41 2.86 9.11 45.56 0.42 3.27 16 28 H 0.18 3.04 4.89 -52.49 -0.26 2.78 16 29 H 0.28 6.11 8.31 -40.82 -0.34 5.77 16 30 H 0.18 3.64 4.85 -51.93 -0.25 3.39 16 31 H 0.09 1.48 5.27 -51.93 -0.27 1.21 16 LS Contribution 286.02 15.07 4.31 4.31 Total: -1.00 -30.92 286.02 -2.51 -33.43 By element: Atomic # 1 Polarization: 8.21 SS G_CDS: -1.12 Total: 7.09 kcal Atomic # 6 Polarization: 20.83 SS G_CDS: -1.05 Total: 19.77 kcal Atomic # 7 Polarization: -48.52 SS G_CDS: 1.19 Total: -47.33 kcal Atomic # 8 Polarization: -29.31 SS G_CDS: -0.81 Total: -30.11 kcal Atomic # 14 Polarization: 17.87 SS G_CDS: -5.03 Total: 12.84 kcal Total LS contribution 4.31 Total: 4.31 kcal Total: -30.92 -2.51 -33.43 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001594564152.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 48.255 kcal (2) G-P(sol) polarization free energy of solvation -30.922 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 17.333 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.508 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -33.430 kcal (6) G-S(sol) free energy of system = (1) + (5) 14.825 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds