Wall clock time and date at job start Tue Mar 31 2020 00:15:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46499 * 1 3 3 N 1.28455 * 125.06307 * 2 1 4 4 C 1.32003 * 110.51085 * 179.97438 * 3 2 1 5 5 C 1.47635 * 126.26942 * 179.97438 * 4 3 2 6 6 O 1.21490 * 120.00181 * 180.02562 * 5 4 3 7 7 O 1.34718 * 120.00231 * 0.02562 * 5 4 3 8 8 C 1.40932 * 107.46362 * 359.97438 * 4 3 2 9 9 C 1.36801 * 125.06195 * 179.97438 * 2 1 3 10 10 C 1.47073 * 126.65141 * 359.97438 * 9 2 1 11 11 O 1.21663 * 120.00154 * 22.92714 * 10 9 2 12 12 N 1.34776 * 119.99904 * 202.92784 * 10 9 2 13 13 C 1.36855 * 119.99935 * 186.09517 * 12 10 9 14 14 H 1.08003 * 119.99794 * 22.97250 * 13 12 10 15 15 C 1.39042 * 119.99882 * 202.97834 * 13 12 10 16 16 N 1.31368 * 120.00332 * 16.04990 * 15 13 12 17 17 Si 1.86803 * 120.00036 * 196.05277 * 15 13 12 18 18 H 1.48500 * 109.47106 * 89.99716 * 17 15 13 19 19 H 1.48502 * 109.47488 * 210.00224 * 17 15 13 20 20 H 1.48502 * 109.46880 * 329.99855 * 17 15 13 21 21 C 1.46498 * 120.00195 * 6.09383 * 12 10 9 22 22 C 1.47194 * 109.47419 * 55.11792 * 21 12 10 23 23 N 3.94004 * 120.91319 * 116.01965 * 2 1 3 24 24 H 1.09004 * 109.46987 * 95.86061 * 1 2 3 25 25 H 1.09001 * 109.47325 * 215.85726 * 1 2 3 26 26 H 1.09000 * 109.47233 * 335.86538 * 1 2 3 27 27 H 0.96695 * 117.00275 * 180.02562 * 7 5 4 28 28 H 1.07999 * 127.27623 * 180.02562 * 8 4 3 29 29 H 0.97000 * 120.00289 * 179.97438 * 16 15 13 30 30 H 1.09006 * 109.47220 * 175.11995 * 21 12 10 31 31 H 1.09000 * 109.46920 * 295.11759 * 21 12 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 7 2.2029 1.0514 0.0000 4 6 3.4806 0.7198 0.0006 5 6 4.6251 1.6524 0.0002 6 8 5.7606 1.2206 0.0003 7 8 4.4102 2.9824 -0.0003 8 6 3.5522 -0.6877 0.0015 9 6 2.2509 -1.1198 0.0005 10 6 1.7894 -2.5162 0.0017 11 8 0.6770 -2.7897 -0.4082 12 7 2.5988 -3.4930 0.4568 13 6 2.2207 -4.8034 0.3432 14 1 1.4985 -5.0941 -0.4054 15 6 2.7661 -5.7604 1.1917 16 7 3.3873 -5.3887 2.2880 17 14 2.6157 -7.5746 0.7728 18 1 3.7835 -7.9925 -0.0437 19 1 2.5775 -8.3705 2.0259 20 1 1.3664 -7.8029 0.0032 21 6 3.8835 -3.1522 1.0729 22 6 3.6612 -2.2100 2.1818 23 7 3.4891 -1.4829 3.0377 24 1 -0.3633 -0.1049 -1.0223 25 1 -0.3634 -0.8329 0.6020 26 1 -0.3634 0.9378 0.4202 27 1 5.1907 3.5532 -0.0009 28 1 4.4437 -1.2974 0.0026 29 1 3.7674 -6.0564 2.8801 30 1 4.3551 -4.0578 1.4546 31 1 4.5323 -2.6907 0.3286 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001594564152.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:15:59 Heat of formation + Delta-G solvation = -7.447293 kcal Electronic energy + Delta-G solvation = -21598.677275 eV Core-core repulsion = 18075.936645 eV Total energy + Delta-G solvation = -3522.740629 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 278.085 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -43.89085 -40.99274 -40.48683 -37.89044 -37.14257 -36.50427 -34.66014 -33.92877 -32.15013 -29.43406 -28.95060 -27.14231 -25.18107 -23.88780 -22.36363 -21.01407 -19.82980 -19.17572 -18.89912 -17.87298 -17.69143 -17.52495 -17.24455 -16.47406 -16.43925 -15.83049 -15.65111 -15.34011 -14.75155 -14.50170 -14.28023 -13.87294 -13.77741 -13.63792 -13.51059 -13.35245 -12.95802 -12.64156 -12.49156 -12.44984 -12.07330 -12.05069 -11.91826 -11.25846 -10.85494 -10.47924 -10.31120 -9.87107 -8.40294 -6.10961 0.06541 0.27969 1.09245 1.49490 1.54792 1.62483 1.70517 1.87985 1.93295 1.97469 2.20276 2.32086 2.84746 2.97726 3.16649 3.24891 3.64509 3.96117 4.12470 4.22156 4.25663 4.44183 4.56075 4.65330 4.99950 5.07626 5.33543 5.44277 5.48163 5.89231 6.27824 6.55147 6.65791 6.92833 6.95620 7.14329 7.67701 8.56675 Molecular weight = 278.08amu Principal moments of inertia in cm(-1) A = 0.024293 B = 0.005903 C = 0.005205 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1152.306240 B = 4742.219281 C = 5378.354913 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.086 3.914 2 N -0.247 5.247 3 N -0.220 5.220 4 C -0.032 4.032 5 C 0.587 3.413 6 O -0.526 6.526 7 O -0.494 6.494 8 C -0.158 4.158 9 C -0.016 4.016 10 C 0.503 3.497 11 O -0.598 6.598 12 N -0.419 5.419 13 C -0.326 4.326 14 H 0.098 0.902 15 C 0.004 3.996 16 N -0.886 5.886 17 Si 1.001 2.999 18 H -0.258 1.258 19 H -0.281 1.281 20 H -0.273 1.273 21 C 0.171 3.829 22 C 0.237 3.763 23 N -0.483 5.483 24 H 0.107 0.893 25 H 0.088 0.912 26 H 0.125 0.875 27 H 0.438 0.562 28 H 0.189 0.811 29 H 0.284 0.716 30 H 0.173 0.827 31 H 0.126 0.874 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.168 7.413 -4.765 9.075 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.053 4.053 2 N -0.038 5.038 3 N -0.061 5.061 4 C -0.186 4.186 5 C 0.429 3.571 6 O -0.414 6.414 7 O -0.307 6.307 8 C -0.185 4.185 9 C -0.143 4.143 10 C 0.292 3.708 11 O -0.484 6.484 12 N -0.136 5.136 13 C -0.453 4.453 14 H 0.115 0.885 15 C -0.198 4.198 16 N -0.525 5.525 17 Si 0.824 3.176 18 H -0.182 1.182 19 H -0.207 1.207 20 H -0.197 1.197 21 C 0.045 3.955 22 C -0.081 4.081 23 N -0.163 5.163 24 H 0.125 0.875 25 H 0.107 0.893 26 H 0.143 0.857 27 H 0.300 0.700 28 H 0.206 0.794 29 H 0.095 0.905 30 H 0.189 0.811 31 H 0.143 0.857 Dipole moment (debyes) X Y Z Total from point charges 0.609 8.803 -3.529 9.504 hybrid contribution 0.831 -1.322 -0.149 1.568 sum 1.440 7.482 -3.678 8.460 Atomic orbital electron populations 1.22548 0.70221 1.06207 1.06295 1.46062 1.09256 1.01240 1.47275 1.73561 1.02848 1.13211 1.16501 1.20698 0.90331 0.92558 1.14992 1.18929 0.85517 0.81334 0.71320 1.90901 1.23512 1.79247 1.47700 1.84584 1.44915 1.16481 1.84745 1.22552 0.97096 0.93357 1.05543 1.21357 0.91149 0.90448 1.11297 1.17056 0.85060 0.82719 0.85942 1.90630 1.20515 1.83196 1.54018 1.43411 1.15123 1.05513 1.49581 1.19876 1.27021 0.80761 1.17621 0.88453 1.26153 0.95780 1.04751 0.93085 1.69679 1.35829 1.36806 1.10230 0.84797 0.79358 0.75679 0.77802 1.18246 1.20678 1.19746 1.20184 0.87732 0.98946 0.88616 1.29754 0.92556 0.91814 0.93948 1.80988 1.08313 1.13622 1.13343 0.87513 0.89335 0.85692 0.69977 0.79415 0.90502 0.81128 0.85716 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 2.39 10.48 127.77 1.34 3.73 16 2 N -0.25 -8.77 3.75 -357.03 -1.34 -10.11 16 3 N -0.22 -7.67 11.97 -48.50 -0.58 -8.25 16 4 C -0.03 -1.10 7.13 42.26 0.30 -0.80 16 5 C 0.59 17.90 8.34 70.30 0.59 18.49 16 6 O -0.53 -17.61 17.70 19.87 0.35 -17.25 16 7 O -0.49 -11.15 13.44 -56.28 -0.76 -11.91 16 8 C -0.16 -5.72 7.71 22.67 0.17 -5.55 16 9 C -0.02 -0.64 5.80 40.42 0.23 -0.40 16 10 C 0.50 22.92 7.13 86.56 0.62 23.54 16 11 O -0.60 -29.79 15.19 -4.23 -0.06 -29.86 16 12 N -0.42 -19.00 2.80 -649.55 -1.82 -20.82 16 13 C -0.33 -15.63 9.23 84.10 0.78 -14.85 16 14 H 0.10 4.90 7.50 -2.91 -0.02 4.87 16 15 C 0.00 0.20 5.07 84.96 0.43 0.63 16 16 N -0.89 -40.54 10.49 21.68 0.23 -40.32 16 17 Si 1.00 36.05 29.58 68.60 2.03 38.08 16 18 H -0.26 -8.69 7.11 99.48 0.71 -7.99 16 19 H -0.28 -10.09 7.11 99.48 0.71 -9.38 16 20 H -0.27 -10.06 7.11 99.48 0.71 -9.35 16 21 C 0.17 6.71 4.94 84.57 0.42 7.13 16 22 C 0.24 10.07 11.92 89.44 1.07 11.14 16 23 N -0.48 -21.94 18.54 20.01 0.37 -21.56 16 24 H 0.11 2.63 8.14 -2.38 -0.02 2.61 16 25 H 0.09 2.78 7.27 -2.39 -0.02 2.76 16 26 H 0.12 2.62 8.14 -2.39 -0.02 2.60 16 27 H 0.44 4.65 9.11 -74.06 -0.67 3.97 16 28 H 0.19 6.16 4.89 -2.91 -0.01 6.15 16 29 H 0.28 12.18 8.31 -92.71 -0.77 11.41 16 30 H 0.17 7.01 4.85 -2.38 -0.01 6.99 16 31 H 0.13 3.97 5.27 -2.39 -0.01 3.96 16 Total: -1.00 -65.27 286.02 4.92 -60.35 By element: Atomic # 1 Polarization: 18.05 SS G_CDS: 0.56 Total: 18.61 kcal Atomic # 6 Polarization: 37.10 SS G_CDS: 5.94 Total: 43.04 kcal Atomic # 7 Polarization: -97.91 SS G_CDS: -3.14 Total: -101.06 kcal Atomic # 8 Polarization: -58.55 SS G_CDS: -0.47 Total: -59.02 kcal Atomic # 14 Polarization: 36.05 SS G_CDS: 2.03 Total: 38.08 kcal Total: -65.27 4.92 -60.35 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001594564152.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 52.898 kcal (2) G-P(sol) polarization free energy of solvation -65.269 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -12.372 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.924 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.345 kcal (6) G-S(sol) free energy of system = (1) + (5) -7.447 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds