Wall clock time and date at job start Tue Mar 31 2020 00:27:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30824 * 1 3 3 Si 1.86797 * 119.99660 * 2 1 4 4 H 1.48502 * 109.47151 * 269.99976 * 3 2 1 5 5 H 1.48497 * 109.47468 * 29.99964 * 3 2 1 6 6 H 1.48500 * 109.47187 * 149.99978 * 3 2 1 7 7 C 1.39945 * 120.00405 * 179.97438 * 2 1 3 8 8 H 1.07998 * 120.00051 * 197.84871 * 7 2 1 9 9 C 1.41402 * 119.99874 * 17.84641 * 7 2 1 10 10 C 1.40710 * 120.24466 * 204.38501 * 9 7 2 11 11 C 1.37615 * 119.74272 * 180.02562 * 10 9 7 12 12 C 1.38629 * 120.25256 * 0.02562 * 11 10 9 13 13 C 1.50701 * 119.75224 * 179.97438 * 12 11 10 14 14 O 1.45190 * 109.47109 * 90.00195 * 13 12 11 15 15 C 1.34235 * 116.99859 * 180.02562 * 14 13 12 16 16 O 1.20823 * 119.99902 * 359.97438 * 15 14 13 17 17 C 1.50706 * 119.99881 * 179.97438 * 15 14 13 18 18 C 1.53004 * 109.47047 * 179.97438 * 17 15 14 19 19 C 1.50696 * 109.47129 * 180.02562 * 18 17 15 20 20 O 1.20830 * 119.99816 * 359.97438 * 19 18 17 21 21 O 1.34226 * 120.00093 * 180.02562 * 19 18 17 22 22 C 1.38633 * 120.49935 * 0.25256 * 12 11 10 23 23 C 1.37626 * 120.24985 * 359.44856 * 22 12 11 24 24 H 0.97002 * 120.00394 * 0.02562 * 1 2 3 25 25 H 1.08003 * 120.12782 * 0.02562 * 10 9 7 26 26 H 1.08003 * 119.87400 * 180.02562 * 11 10 9 27 27 H 1.08999 * 109.47081 * 329.99647 * 13 12 11 28 28 H 1.09003 * 109.47076 * 210.00350 * 13 12 11 29 29 H 1.09000 * 109.46971 * 299.99625 * 17 15 14 30 30 H 1.09001 * 109.47017 * 59.99996 * 17 15 14 31 31 H 1.09005 * 109.46867 * 300.00155 * 18 17 15 32 32 H 1.09004 * 109.46986 * 59.99670 * 18 17 15 33 33 H 0.96702 * 117.00078 * 180.02562 * 21 19 18 34 34 H 1.08005 * 119.88004 * 179.70266 * 22 12 11 35 35 H 1.07997 * 120.13123 * 180.27487 * 23 22 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3082 0.0000 0.0000 3 14 2.2421 1.6178 0.0000 4 1 2.4896 2.0465 -1.4001 5 1 1.4396 2.6527 0.7000 6 1 3.5397 1.4403 0.7000 7 6 2.0081 -1.2119 0.0005 8 1 3.0491 -1.2342 0.2872 9 6 1.3521 -2.4072 -0.3742 10 6 1.8259 -3.6498 0.0856 11 6 1.1800 -4.8067 -0.2860 12 6 0.0668 -4.7512 -1.1104 13 6 -0.6316 -6.0252 -1.5108 14 8 -1.6653 -6.3361 -0.5399 15 6 -2.3857 -7.4487 -0.7519 16 8 -2.1601 -8.1397 -1.7171 17 6 -3.4758 -7.8361 0.2140 18 6 -4.1366 -9.1334 -0.2563 19 6 -5.2270 -9.5204 0.7091 20 8 -5.4522 -8.8297 1.6746 21 8 -5.9474 -10.6330 0.4971 22 6 -0.4053 -3.5330 -1.5740 23 6 0.2212 -2.3628 -1.2104 24 1 -0.4851 0.8400 -0.0004 25 1 2.6932 -3.6954 0.7276 26 1 1.5416 -5.7616 0.0661 27 1 0.0913 -6.8403 -1.5456 28 1 -1.0834 -5.8981 -2.4946 29 1 -3.0471 -7.9848 1.2050 30 1 -4.2224 -7.0430 0.2563 31 1 -4.5653 -8.9843 -1.2474 32 1 -3.3901 -9.9267 -0.2990 33 1 -6.6363 -10.8398 1.1435 34 1 -1.2705 -3.5017 -2.2198 35 1 -0.1509 -1.4145 -1.5691 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001594611660.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:27:23 Heat of formation + Delta-G solvation = -175.604335 kcal Electronic energy + Delta-G solvation = -19995.265345 eV Core-core repulsion = 16536.480471 eV Total energy + Delta-G solvation = -3458.784874 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 278.103 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -40.70008 -40.03671 -37.72926 -36.55447 -36.16888 -33.88623 -33.36439 -30.82218 -29.38569 -27.69987 -26.41057 -23.80697 -21.90085 -21.10332 -20.27449 -20.06445 -18.55124 -17.66914 -17.40373 -16.82061 -16.56803 -15.97009 -15.77539 -15.31817 -14.29912 -14.23467 -13.83302 -13.48330 -13.47006 -12.87772 -12.56041 -12.35706 -12.12843 -12.02259 -11.86239 -11.73903 -11.55942 -11.20774 -11.01144 -10.93808 -10.83693 -10.47831 -10.32819 -10.18122 -9.71325 -9.47969 -9.24207 -7.57912 -7.46756 -6.87681 -4.47787 1.88319 2.30695 2.35808 2.67060 2.99043 3.00515 3.03945 3.05273 3.46697 3.84930 4.28501 4.50469 4.70201 4.98451 5.09932 5.29419 5.44140 5.58796 5.61545 5.64340 5.68489 6.04886 6.16554 6.23422 6.29743 6.80549 6.86322 6.96507 7.16941 7.25220 7.50318 7.55323 7.72306 7.94616 7.97971 7.99939 8.18020 8.52742 8.77369 8.85472 10.06047 Molecular weight = 278.10amu Principal moments of inertia in cm(-1) A = 0.034257 B = 0.002812 C = 0.002700 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 817.158587 B = 9954.413136 C =10367.002060 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.784 5.784 2 C 0.075 3.925 3 Si 0.911 3.089 4 H -0.266 1.266 5 H -0.277 1.277 6 H -0.261 1.261 7 C -0.456 4.456 8 H 0.081 0.919 9 C 0.118 3.882 10 C -0.230 4.230 11 C -0.063 4.063 12 C -0.238 4.238 13 C 0.136 3.864 14 O -0.347 6.347 15 C 0.459 3.541 16 O -0.524 6.524 17 C -0.108 4.108 18 C -0.102 4.102 19 C 0.482 3.518 20 O -0.514 6.514 21 O -0.517 6.517 22 C -0.075 4.075 23 C -0.171 4.171 24 H 0.283 0.717 25 H 0.095 0.905 26 H 0.089 0.911 27 H 0.062 0.938 28 H 0.062 0.938 29 H 0.114 0.886 30 H 0.114 0.886 31 H 0.116 0.884 32 H 0.116 0.884 33 H 0.411 0.589 34 H 0.089 0.911 35 H 0.120 0.880 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.966 -12.619 -0.314 14.927 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.409 5.409 2 C -0.145 4.145 3 Si 0.735 3.265 4 H -0.191 1.191 5 H -0.202 1.202 6 H -0.185 1.185 7 C -0.485 4.485 8 H 0.099 0.901 9 C 0.116 3.884 10 C -0.250 4.250 11 C -0.082 4.082 12 C -0.239 4.239 13 C 0.064 3.936 14 O -0.263 6.263 15 C 0.303 3.697 16 O -0.414 6.414 17 C -0.146 4.146 18 C -0.140 4.140 19 C 0.324 3.676 20 O -0.402 6.402 21 O -0.329 6.329 22 C -0.094 4.094 23 C -0.190 4.190 24 H 0.094 0.906 25 H 0.113 0.887 26 H 0.107 0.893 27 H 0.080 0.920 28 H 0.081 0.919 29 H 0.132 0.868 30 H 0.133 0.867 31 H 0.134 0.866 32 H 0.134 0.866 33 H 0.270 0.730 34 H 0.107 0.893 35 H 0.138 0.862 Dipole moment (debyes) X Y Z Total from point charges -7.816 -12.333 -0.614 14.614 hybrid contribution -0.146 0.603 0.428 0.754 sum -7.963 -11.729 -0.186 14.178 Atomic orbital electron populations 1.69827 1.07679 1.29558 1.33809 1.25980 0.94770 1.01567 0.92136 0.86261 0.80497 0.80280 0.79435 1.19145 1.20199 1.18503 1.19693 0.98257 0.91224 1.39278 0.90128 1.17694 0.90800 0.92095 0.87860 1.20964 1.04155 0.92684 1.07177 1.20389 0.95111 0.96653 0.96013 1.18673 1.01307 0.91966 1.11956 1.21761 0.86441 0.96013 0.89356 1.86733 1.45959 1.40569 1.53026 1.23373 0.81985 0.79316 0.85058 1.90638 1.67904 1.52528 1.30334 1.21111 0.96335 0.97840 0.99314 1.21076 0.95403 0.98858 0.98662 1.23383 0.81487 0.77587 0.85131 1.90770 1.67242 1.51963 1.30198 1.84531 1.48776 1.43493 1.56068 1.20542 0.97652 0.92470 0.98725 1.21301 0.99704 0.96663 1.01334 0.90600 0.88696 0.89292 0.92002 0.91942 0.86766 0.86740 0.86551 0.86556 0.72988 0.89313 0.86220 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.78 -19.77 10.95 55.55 0.61 -19.16 16 2 C 0.07 1.82 5.14 -17.34 -0.09 1.73 16 3 Si 0.91 18.09 29.59 -169.99 -5.03 13.06 16 4 H -0.27 -5.23 7.11 56.52 0.40 -4.83 16 5 H -0.28 -5.38 7.11 56.52 0.40 -4.98 16 6 H -0.26 -5.13 7.11 56.52 0.40 -4.72 16 7 C -0.46 -11.77 9.05 -37.74 -0.34 -12.11 16 8 H 0.08 1.99 7.91 -52.49 -0.41 1.58 16 9 C 0.12 3.09 5.57 -106.82 -0.60 2.50 16 10 C -0.23 -5.56 9.80 -38.88 -0.38 -5.94 16 11 C -0.06 -1.40 9.67 -39.66 -0.38 -1.79 16 12 C -0.24 -5.20 5.54 -104.33 -0.58 -5.78 16 13 C 0.14 2.53 5.58 36.01 0.20 2.73 16 14 O -0.35 -6.22 10.20 -39.27 -0.40 -6.62 16 15 C 0.46 6.80 7.96 36.01 0.29 7.09 16 16 O -0.52 -8.57 15.73 -18.75 -0.29 -8.87 16 17 C -0.11 -1.18 5.10 -27.88 -0.14 -1.32 16 18 C -0.10 -0.90 5.10 -27.88 -0.14 -1.04 16 19 C 0.48 4.41 8.33 36.00 0.30 4.71 16 20 O -0.51 -6.32 16.74 -18.75 -0.31 -6.64 16 21 O -0.52 -3.53 13.42 -39.25 -0.53 -4.06 16 22 C -0.08 -1.74 9.67 -39.66 -0.38 -2.12 16 23 C -0.17 -4.36 8.70 -38.87 -0.34 -4.69 16 24 H 0.28 6.46 8.30 -40.82 -0.34 6.12 16 25 H 0.09 2.14 8.06 -52.48 -0.42 1.72 16 26 H 0.09 1.74 8.06 -52.48 -0.42 1.31 16 27 H 0.06 1.08 8.07 -51.93 -0.42 0.66 16 28 H 0.06 1.11 8.07 -51.93 -0.42 0.69 16 29 H 0.11 1.18 8.10 -51.93 -0.42 0.76 16 30 H 0.11 1.20 8.10 -51.93 -0.42 0.78 16 31 H 0.12 0.95 8.10 -51.93 -0.42 0.53 16 32 H 0.12 0.94 8.10 -51.93 -0.42 0.52 16 33 H 0.41 1.10 9.10 45.56 0.41 1.52 16 34 H 0.09 1.86 8.06 -52.48 -0.42 1.43 16 35 H 0.12 3.13 6.16 -52.49 -0.32 2.81 16 LS Contribution 317.35 15.07 4.78 4.78 Total: -1.00 -30.65 317.35 -7.01 -37.66 By element: Atomic # 1 Polarization: 9.13 SS G_CDS: -3.25 Total: 5.88 kcal Atomic # 6 Polarization: -13.45 SS G_CDS: -2.59 Total: -16.04 kcal Atomic # 7 Polarization: -19.77 SS G_CDS: 0.61 Total: -19.16 kcal Atomic # 8 Polarization: -24.64 SS G_CDS: -1.54 Total: -26.18 kcal Atomic # 14 Polarization: 18.09 SS G_CDS: -5.03 Total: 13.06 kcal Total LS contribution 4.78 Total: 4.78 kcal Total: -30.65 -7.01 -37.66 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001594611660.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -137.946 kcal (2) G-P(sol) polarization free energy of solvation -30.648 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -168.594 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.011 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.658 kcal (6) G-S(sol) free energy of system = (1) + (5) -175.604 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds