Wall clock time and date at job start Tue Mar 31 2020 00:27:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30824 * 1 3 3 Si 1.86797 * 119.99660 * 2 1 4 4 H 1.48502 * 109.47151 * 269.99976 * 3 2 1 5 5 H 1.48497 * 109.47468 * 29.99964 * 3 2 1 6 6 H 1.48500 * 109.47187 * 149.99978 * 3 2 1 7 7 C 1.39945 * 120.00405 * 179.97438 * 2 1 3 8 8 H 1.07998 * 120.00051 * 197.84871 * 7 2 1 9 9 C 1.41402 * 119.99874 * 17.84641 * 7 2 1 10 10 C 1.40710 * 120.24466 * 204.38501 * 9 7 2 11 11 C 1.37615 * 119.74272 * 180.02562 * 10 9 7 12 12 C 1.38629 * 120.25256 * 0.02562 * 11 10 9 13 13 C 1.50701 * 119.75224 * 179.97438 * 12 11 10 14 14 O 1.45190 * 109.47109 * 90.00195 * 13 12 11 15 15 C 1.34235 * 116.99859 * 180.02562 * 14 13 12 16 16 O 1.20823 * 119.99902 * 359.97438 * 15 14 13 17 17 C 1.50706 * 119.99881 * 179.97438 * 15 14 13 18 18 C 1.53004 * 109.47047 * 179.97438 * 17 15 14 19 19 C 1.50696 * 109.47129 * 180.02562 * 18 17 15 20 20 O 1.20830 * 119.99816 * 359.97438 * 19 18 17 21 21 O 1.34226 * 120.00093 * 180.02562 * 19 18 17 22 22 C 1.38633 * 120.49935 * 0.25256 * 12 11 10 23 23 C 1.37626 * 120.24985 * 359.44856 * 22 12 11 24 24 H 0.97002 * 120.00394 * 0.02562 * 1 2 3 25 25 H 1.08003 * 120.12782 * 0.02562 * 10 9 7 26 26 H 1.08003 * 119.87400 * 180.02562 * 11 10 9 27 27 H 1.08999 * 109.47081 * 329.99647 * 13 12 11 28 28 H 1.09003 * 109.47076 * 210.00350 * 13 12 11 29 29 H 1.09000 * 109.46971 * 299.99625 * 17 15 14 30 30 H 1.09001 * 109.47017 * 59.99996 * 17 15 14 31 31 H 1.09005 * 109.46867 * 300.00155 * 18 17 15 32 32 H 1.09004 * 109.46986 * 59.99670 * 18 17 15 33 33 H 0.96702 * 117.00078 * 180.02562 * 21 19 18 34 34 H 1.08005 * 119.88004 * 179.70266 * 22 12 11 35 35 H 1.07997 * 120.13123 * 180.27487 * 23 22 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3082 0.0000 0.0000 3 14 2.2421 1.6178 0.0000 4 1 2.4896 2.0465 -1.4001 5 1 1.4396 2.6527 0.7000 6 1 3.5397 1.4403 0.7000 7 6 2.0081 -1.2119 0.0005 8 1 3.0491 -1.2342 0.2872 9 6 1.3521 -2.4072 -0.3742 10 6 1.8259 -3.6498 0.0856 11 6 1.1800 -4.8067 -0.2860 12 6 0.0668 -4.7512 -1.1104 13 6 -0.6316 -6.0252 -1.5108 14 8 -1.6653 -6.3361 -0.5399 15 6 -2.3857 -7.4487 -0.7519 16 8 -2.1601 -8.1397 -1.7171 17 6 -3.4758 -7.8361 0.2140 18 6 -4.1366 -9.1334 -0.2563 19 6 -5.2270 -9.5204 0.7091 20 8 -5.4522 -8.8297 1.6746 21 8 -5.9474 -10.6330 0.4971 22 6 -0.4053 -3.5330 -1.5740 23 6 0.2212 -2.3628 -1.2104 24 1 -0.4851 0.8400 -0.0004 25 1 2.6932 -3.6954 0.7276 26 1 1.5416 -5.7616 0.0661 27 1 0.0913 -6.8403 -1.5456 28 1 -1.0834 -5.8981 -2.4946 29 1 -3.0471 -7.9848 1.2050 30 1 -4.2224 -7.0430 0.2563 31 1 -4.5653 -8.9843 -1.2474 32 1 -3.3901 -9.9267 -0.2990 33 1 -6.6363 -10.8398 1.1435 34 1 -1.2705 -3.5017 -2.2198 35 1 -0.1509 -1.4145 -1.5691 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001594611660.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:27:22 Heat of formation + Delta-G solvation = -193.037618 kcal Electronic energy + Delta-G solvation = -19996.021309 eV Core-core repulsion = 16536.480471 eV Total energy + Delta-G solvation = -3459.540837 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 278.103 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -41.66051 -41.06549 -39.48811 -37.62097 -37.14913 -35.68289 -34.24790 -32.56926 -31.22938 -29.19611 -27.57710 -25.45000 -22.97052 -22.81838 -21.83473 -21.25558 -19.34927 -19.26711 -18.66457 -17.82375 -17.69728 -17.22691 -16.93939 -16.77088 -15.83459 -15.60264 -15.49593 -14.76763 -14.40988 -14.19435 -13.94224 -13.84431 -13.71145 -13.51965 -13.10653 -12.85213 -12.68319 -12.58229 -12.55477 -12.35134 -12.09926 -11.74164 -11.66818 -11.60283 -11.42087 -11.27698 -11.04911 -9.43901 -9.33260 -8.68905 -6.40060 0.72926 1.11059 1.17957 1.18727 1.38153 1.42891 1.52245 1.73664 2.19231 2.35771 2.74740 3.46633 3.68029 3.94524 3.96547 4.10264 4.13862 4.37295 4.48196 4.52776 4.55801 4.59643 4.68396 4.84758 5.00766 5.11853 5.30698 5.39519 5.52807 5.62900 5.65160 5.88796 6.05580 6.14461 6.32138 6.64421 6.74088 6.88409 6.97183 6.98789 8.27717 Molecular weight = 278.10amu Principal moments of inertia in cm(-1) A = 0.034257 B = 0.002812 C = 0.002700 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 817.158587 B = 9954.413136 C =10367.002060 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.818 5.818 2 C 0.034 3.966 3 Si 0.985 3.015 4 H -0.261 1.261 5 H -0.268 1.268 6 H -0.257 1.257 7 C -0.493 4.493 8 H 0.080 0.920 9 C 0.086 3.914 10 C -0.246 4.246 11 C -0.065 4.065 12 C -0.231 4.231 13 C 0.140 3.860 14 O -0.364 6.364 15 C 0.462 3.538 16 O -0.537 6.537 17 C -0.101 4.101 18 C -0.099 4.099 19 C 0.493 3.507 20 O -0.550 6.550 21 O -0.511 6.511 22 C -0.081 4.081 23 C -0.195 4.195 24 H 0.290 0.710 25 H 0.102 0.898 26 H 0.119 0.881 27 H 0.076 0.924 28 H 0.071 0.929 29 H 0.122 0.878 30 H 0.120 0.880 31 H 0.126 0.874 32 H 0.127 0.873 33 H 0.430 0.570 34 H 0.107 0.893 35 H 0.104 0.896 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.508 -13.912 -0.397 16.312 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.444 5.444 2 C -0.182 4.182 3 Si 0.806 3.194 4 H -0.186 1.186 5 H -0.192 1.192 6 H -0.181 1.181 7 C -0.522 4.522 8 H 0.098 0.902 9 C 0.084 3.916 10 C -0.265 4.265 11 C -0.084 4.084 12 C -0.233 4.233 13 C 0.068 3.932 14 O -0.281 6.281 15 C 0.307 3.693 16 O -0.428 6.428 17 C -0.138 4.138 18 C -0.136 4.136 19 C 0.337 3.663 20 O -0.441 6.441 21 O -0.325 6.325 22 C -0.099 4.099 23 C -0.214 4.214 24 H 0.101 0.899 25 H 0.120 0.880 26 H 0.137 0.863 27 H 0.095 0.905 28 H 0.089 0.911 29 H 0.140 0.860 30 H 0.138 0.862 31 H 0.144 0.856 32 H 0.145 0.855 33 H 0.292 0.708 34 H 0.125 0.875 35 H 0.122 0.878 Dipole moment (debyes) X Y Z Total from point charges -8.383 -13.673 -0.700 16.054 hybrid contribution -0.092 0.773 0.425 0.887 sum -8.476 -12.900 -0.275 15.437 Atomic orbital electron populations 1.69875 1.09113 1.30866 1.34503 1.26832 0.95512 1.04736 0.91092 0.85152 0.79067 0.75614 0.79593 1.18598 1.19205 1.18086 1.19936 0.98533 0.92415 1.41308 0.90230 1.18055 0.91611 0.93235 0.88705 1.21184 1.04798 0.92902 1.07662 1.20726 0.94824 0.97303 0.95505 1.19031 1.00991 0.92960 1.10275 1.21594 0.87109 0.94760 0.89717 1.86685 1.46237 1.42269 1.52881 1.23990 0.81886 0.78023 0.85368 1.90633 1.68327 1.52649 1.31164 1.21147 0.95098 0.99080 0.98510 1.21049 0.95615 0.98023 0.98902 1.23292 0.81231 0.77495 0.84289 1.90770 1.68384 1.53219 1.31687 1.84485 1.49097 1.42215 1.56679 1.20798 0.97974 0.92377 0.98785 1.21282 1.00604 0.96984 1.02561 0.89878 0.87952 0.86288 0.90543 0.91076 0.85999 0.86204 0.85601 0.85470 0.70765 0.87475 0.87798 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.82 -42.38 10.95 21.83 0.24 -42.14 16 2 C 0.03 1.70 5.14 85.26 0.44 2.14 16 3 Si 0.99 37.45 29.59 68.60 2.03 39.49 16 4 H -0.26 -9.63 7.11 99.48 0.71 -8.93 16 5 H -0.27 -9.66 7.11 99.48 0.71 -8.95 16 6 H -0.26 -9.50 7.11 99.48 0.71 -8.79 16 7 C -0.49 -26.30 9.05 23.46 0.21 -26.09 16 8 H 0.08 4.07 7.91 -2.91 -0.02 4.05 16 9 C 0.09 4.66 5.57 -21.29 -0.12 4.54 16 10 C -0.25 -12.00 9.80 22.73 0.22 -11.78 16 11 C -0.07 -2.84 9.67 22.22 0.21 -2.63 16 12 C -0.23 -9.87 5.54 -19.68 -0.11 -9.98 16 13 C 0.14 4.93 5.58 71.24 0.40 5.33 16 14 O -0.36 -12.34 10.20 -51.47 -0.53 -12.87 16 15 C 0.46 12.69 7.96 71.24 0.57 13.25 16 16 O -0.54 -16.29 15.73 21.97 0.35 -15.94 16 17 C -0.10 -1.98 5.10 29.85 0.15 -1.83 16 18 C -0.10 -1.48 5.10 29.85 0.15 -1.33 16 19 C 0.49 7.91 8.33 71.23 0.59 8.50 16 20 O -0.55 -12.63 16.74 21.95 0.37 -12.27 16 21 O -0.51 -5.61 13.42 -51.38 -0.69 -6.30 16 22 C -0.08 -3.75 9.67 22.22 0.21 -3.54 16 23 C -0.19 -10.25 8.70 22.73 0.20 -10.05 16 24 H 0.29 13.52 8.30 -92.71 -0.77 12.75 16 25 H 0.10 4.68 8.06 -2.91 -0.02 4.66 16 26 H 0.12 4.38 8.06 -2.91 -0.02 4.35 16 27 H 0.08 2.47 8.07 -2.39 -0.02 2.45 16 28 H 0.07 2.37 8.07 -2.39 -0.02 2.35 16 29 H 0.12 2.26 8.10 -2.39 -0.02 2.24 16 30 H 0.12 2.28 8.10 -2.39 -0.02 2.26 16 31 H 0.13 1.70 8.10 -2.38 -0.02 1.68 16 32 H 0.13 1.68 8.10 -2.38 -0.02 1.66 16 33 H 0.43 1.19 9.10 -74.06 -0.67 0.52 16 34 H 0.11 4.44 8.06 -2.91 -0.02 4.42 16 35 H 0.10 5.69 6.16 -2.91 -0.02 5.67 16 Total: -1.00 -66.46 317.35 5.35 -61.11 By element: Atomic # 1 Polarization: 21.92 SS G_CDS: 0.45 Total: 22.37 kcal Atomic # 6 Polarization: -36.59 SS G_CDS: 3.13 Total: -33.45 kcal Atomic # 7 Polarization: -42.38 SS G_CDS: 0.24 Total: -42.14 kcal Atomic # 8 Polarization: -46.88 SS G_CDS: -0.50 Total: -47.38 kcal Atomic # 14 Polarization: 37.45 SS G_CDS: 2.03 Total: 39.49 kcal Total: -66.46 5.35 -61.11 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001594611660.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -131.926 kcal (2) G-P(sol) polarization free energy of solvation -66.465 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -198.391 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.353 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.112 kcal (6) G-S(sol) free energy of system = (1) + (5) -193.038 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds