Wall clock time and date at job start Tue Mar 31 2020 00:25:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31509 * 1 3 3 Si 1.86808 * 120.00033 * 2 1 4 4 H 1.48496 * 109.47120 * 87.09363 * 3 2 1 5 5 H 1.48495 * 109.46920 * 207.09511 * 3 2 1 6 6 H 1.48502 * 109.46719 * 327.09486 * 3 2 1 7 7 C 1.37875 * 120.00148 * 179.97438 * 2 1 3 8 8 H 1.08000 * 120.00291 * 1.40519 * 7 2 1 9 9 C 1.50708 * 120.00085 * 181.40791 * 7 2 1 10 10 H 1.09000 * 109.47094 * 24.79143 * 9 7 2 11 11 C 1.52999 * 109.46885 * 144.79205 * 9 7 2 12 12 C 1.50688 * 109.47354 * 293.80185 * 11 9 7 13 13 O 1.20825 * 120.00381 * 0.02562 * 12 11 9 14 14 O 1.34236 * 120.00296 * 179.97438 * 12 11 9 15 15 C 1.45203 * 117.00110 * 180.02562 * 14 12 11 16 16 C 1.50702 * 109.46690 * 180.02562 * 15 14 12 17 17 O 1.20821 * 119.99963 * 359.97438 * 16 15 14 18 18 O 1.34230 * 119.99404 * 180.02562 * 16 15 14 19 19 C 1.50699 * 109.46801 * 264.79304 * 9 7 2 20 20 C 1.38240 * 119.99980 * 306.64426 * 19 9 7 21 21 C 1.38238 * 119.99579 * 179.81083 * 20 19 9 22 22 C 1.38232 * 120.00406 * 0.39891 * 21 20 19 23 23 C 1.38237 * 119.99864 * 359.85742 * 22 21 20 24 24 C 1.38230 * 119.99847 * 126.92261 * 19 9 7 25 25 H 0.97000 * 120.00116 * 0.02562 * 1 2 3 26 26 H 1.08995 * 109.47237 * 53.81113 * 11 9 7 27 27 H 1.09010 * 109.46566 * 173.80374 * 11 9 7 28 28 H 1.08993 * 109.47507 * 300.00929 * 15 14 12 29 29 H 1.09005 * 109.46681 * 60.00962 * 15 14 12 30 30 H 0.96701 * 116.99471 * 179.97438 * 18 16 15 31 31 H 1.08000 * 120.00143 * 0.02562 * 20 19 9 32 32 H 1.08003 * 119.99602 * 180.23841 * 21 20 19 33 33 H 1.07995 * 120.00043 * 179.83073 * 22 21 20 34 34 H 1.07998 * 120.00385 * 179.97438 * 23 22 21 35 35 H 1.07996 * 120.00708 * 359.97438 * 24 19 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4352 2.0820 1.3982 5 1 3.5760 1.4232 -0.6377 6 1 1.4786 2.6342 -0.7606 7 6 2.0045 -1.1940 0.0005 8 1 1.4648 -2.1292 -0.0220 9 6 3.5112 -1.1942 0.0326 10 1 3.8652 -0.2664 0.4822 11 6 4.0035 -2.3826 0.8609 12 6 3.5997 -2.1934 2.3003 13 8 2.9811 -1.2092 2.6299 14 8 3.9263 -3.1188 3.2163 15 6 3.5040 -2.8709 4.5833 16 6 3.9570 -4.0077 5.4628 17 8 4.5721 -4.9321 4.9863 18 8 3.6762 -3.9937 6.7753 19 6 4.0435 -1.3064 -1.3728 20 6 3.6174 -2.3342 -2.1932 21 6 4.1028 -2.4348 -3.4837 22 6 5.0203 -1.5126 -3.9510 23 6 5.4504 -0.4879 -3.1288 24 6 4.9621 -0.3850 -1.8396 25 1 -0.4850 0.8400 -0.0004 26 1 3.5605 -3.3015 0.4770 27 1 5.0896 -2.4472 0.7937 28 1 3.9463 -1.9397 4.9370 29 1 2.4173 -2.7938 4.6195 30 1 3.9871 -4.7450 7.2987 31 1 2.9028 -3.0565 -1.8272 32 1 3.7670 -3.2356 -4.1260 33 1 5.4015 -1.5928 -4.9582 34 1 6.1676 0.2324 -3.4937 35 1 5.2981 0.4156 -1.1973 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001605582026.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:25:54 Heat of formation + Delta-G solvation = -151.194143 kcal Electronic energy + Delta-G solvation = -21105.752741 eV Core-core repulsion = 17648.026373 eV Total energy + Delta-G solvation = -3457.726368 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 278.103 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -40.55439 -39.73166 -38.60356 -36.49301 -35.92481 -34.22353 -31.80127 -30.25471 -29.87527 -28.71979 -26.12211 -23.00500 -22.10745 -21.83101 -20.72093 -19.33725 -18.22835 -17.14682 -17.10295 -16.91075 -16.63984 -16.05122 -15.32376 -15.28912 -14.51515 -14.26951 -13.90281 -13.38374 -13.24689 -12.78567 -12.73563 -12.46743 -12.26258 -12.02115 -11.90624 -11.71176 -11.19422 -10.83986 -10.68739 -10.58431 -10.51623 -10.44561 -10.03878 -9.78448 -9.67779 -9.20495 -8.54522 -8.23718 -7.88627 -6.07884 -4.07756 2.00498 2.04170 2.07763 2.24701 2.88269 3.35991 3.41008 3.43093 3.54017 4.45091 4.51577 4.94566 5.01763 5.13066 5.22127 5.48678 5.48966 5.52761 5.64499 5.83923 5.88015 6.01927 6.19971 6.25110 6.26034 6.40638 6.62425 6.72855 6.83651 6.89939 7.11047 7.21520 7.48047 7.64051 7.69021 7.74918 8.36839 8.43092 8.90415 9.55550 11.04566 Molecular weight = 278.10amu Principal moments of inertia in cm(-1) A = 0.016927 B = 0.005328 C = 0.004456 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1653.739964 B = 5253.821424 C = 6282.731736 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.895 5.895 2 C 0.087 3.913 3 Si 0.868 3.132 4 H -0.276 1.276 5 H -0.254 1.254 6 H -0.292 1.292 7 C -0.500 4.500 8 H 0.074 0.926 9 C 0.053 3.947 10 H 0.052 0.948 11 C -0.086 4.086 12 C 0.464 3.536 13 O -0.467 6.467 14 O -0.352 6.352 15 C 0.074 3.926 16 C 0.483 3.517 17 O -0.495 6.495 18 O -0.513 6.513 19 C -0.042 4.042 20 C -0.099 4.099 21 C -0.127 4.127 22 C -0.147 4.147 23 C -0.127 4.127 24 C -0.133 4.133 25 H 0.263 0.737 26 H 0.100 0.900 27 H 0.085 0.915 28 H 0.111 0.889 29 H 0.115 0.885 30 H 0.415 0.585 31 H 0.122 0.878 32 H 0.111 0.889 33 H 0.108 0.892 34 H 0.109 0.891 35 H 0.112 0.888 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.818 -5.250 4.919 12.172 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.532 5.532 2 C -0.116 4.116 3 Si 0.696 3.304 4 H -0.202 1.202 5 H -0.178 1.178 6 H -0.219 1.219 7 C -0.537 4.537 8 H 0.092 0.908 9 C 0.034 3.966 10 H 0.070 0.930 11 C -0.124 4.124 12 C 0.305 3.695 13 O -0.349 6.349 14 O -0.271 6.271 15 C -0.002 4.002 16 C 0.324 3.676 17 O -0.381 6.381 18 O -0.326 6.326 19 C -0.042 4.042 20 C -0.117 4.117 21 C -0.146 4.146 22 C -0.165 4.165 23 C -0.146 4.146 24 C -0.151 4.151 25 H 0.073 0.927 26 H 0.118 0.882 27 H 0.103 0.897 28 H 0.129 0.871 29 H 0.133 0.867 30 H 0.275 0.725 31 H 0.140 0.860 32 H 0.129 0.871 33 H 0.126 0.874 34 H 0.127 0.873 35 H 0.130 0.870 Dipole moment (debyes) X Y Z Total from point charges 9.468 -4.737 4.679 11.574 hybrid contribution 0.306 0.590 0.402 0.777 sum 9.774 -4.147 5.081 11.770 Atomic orbital electron populations 1.69878 1.06423 1.27007 1.49879 1.24897 0.94528 0.98919 0.93246 0.86978 0.81077 0.83909 0.78456 1.20152 1.17801 1.21904 1.20646 0.87020 0.94645 1.51365 0.90793 1.18218 0.97769 0.93520 0.87133 0.92962 1.21514 1.01297 1.03516 0.86088 1.24088 0.76909 0.80284 0.88238 1.90732 1.34717 1.29211 1.80289 1.86564 1.73812 1.50472 1.16291 1.21891 1.02767 0.94906 0.80613 1.22873 0.76483 0.87047 0.81193 1.90759 1.36888 1.35777 1.74707 1.84471 1.75424 1.51686 1.21005 1.20603 0.91970 0.93036 0.98636 1.21001 0.98732 0.98684 0.93241 1.21067 0.98119 0.99208 0.96162 1.20887 0.99860 0.96569 0.99154 1.20967 1.00656 0.98401 0.94538 1.21137 0.98233 0.99695 0.96045 0.92684 0.88200 0.89719 0.87126 0.86737 0.72536 0.86028 0.87078 0.87362 0.87319 0.86974 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -27.08 13.96 55.43 0.77 -26.30 16 2 C 0.09 2.47 5.47 -17.82 -0.10 2.37 16 3 Si 0.87 21.61 27.00 -169.99 -4.59 17.02 16 4 H -0.28 -6.96 7.11 56.52 0.40 -6.56 16 5 H -0.25 -5.80 4.72 56.52 0.27 -5.53 16 6 H -0.29 -7.37 7.11 56.52 0.40 -6.96 16 7 C -0.50 -13.15 6.88 -34.44 -0.24 -13.39 16 8 H 0.07 2.10 8.06 -52.49 -0.42 1.68 16 9 C 0.05 1.15 1.17 -92.92 -0.11 1.04 16 10 H 0.05 1.19 4.94 -51.93 -0.26 0.94 16 11 C -0.09 -1.59 5.08 -27.89 -0.14 -1.73 16 12 C 0.46 8.94 7.71 36.00 0.28 9.22 16 13 O -0.47 -10.54 14.77 -18.75 -0.28 -10.81 16 14 O -0.35 -5.98 9.76 -45.93 -0.45 -6.43 16 15 C 0.07 1.00 6.06 36.01 0.22 1.21 16 16 C 0.48 6.02 8.41 36.01 0.30 6.32 16 17 O -0.50 -7.82 17.26 -25.40 -0.44 -8.26 16 18 O -0.51 -4.52 13.42 -39.26 -0.53 -5.05 16 19 C -0.04 -0.84 4.65 -104.62 -0.49 -1.33 16 20 C -0.10 -1.86 8.93 -39.58 -0.35 -2.22 16 21 C -0.13 -2.12 10.05 -39.58 -0.40 -2.52 16 22 C -0.15 -2.32 10.05 -39.58 -0.40 -2.71 16 23 C -0.13 -2.11 10.05 -39.58 -0.40 -2.51 16 24 C -0.13 -2.50 8.70 -39.58 -0.34 -2.84 16 25 H 0.26 7.57 8.31 -40.82 -0.34 7.24 16 26 H 0.10 1.74 8.05 -51.93 -0.42 1.32 16 27 H 0.08 1.32 8.14 -51.92 -0.42 0.90 16 28 H 0.11 1.31 8.13 -51.93 -0.42 0.89 16 29 H 0.11 1.49 8.13 -51.93 -0.42 1.07 16 30 H 0.42 1.72 9.10 45.56 0.41 2.14 16 31 H 0.12 2.28 7.87 -52.49 -0.41 1.87 16 32 H 0.11 1.56 8.06 -52.48 -0.42 1.14 16 33 H 0.11 1.40 8.06 -52.49 -0.42 0.98 16 34 H 0.11 1.51 8.06 -52.49 -0.42 1.08 16 35 H 0.11 2.04 7.12 -52.49 -0.37 1.66 16 LS Contribution 310.34 15.07 4.68 4.68 Total: -1.00 -34.14 310.34 -6.27 -40.41 By element: Atomic # 1 Polarization: 7.11 SS G_CDS: -3.28 Total: 3.83 kcal Atomic # 6 Polarization: -6.92 SS G_CDS: -2.16 Total: -9.09 kcal Atomic # 7 Polarization: -27.08 SS G_CDS: 0.77 Total: -26.30 kcal Atomic # 8 Polarization: -28.86 SS G_CDS: -1.69 Total: -30.55 kcal Atomic # 14 Polarization: 21.61 SS G_CDS: -4.59 Total: 17.02 kcal Total LS contribution 4.68 Total: 4.68 kcal Total: -34.14 -6.27 -40.41 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001605582026.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -110.783 kcal (2) G-P(sol) polarization free energy of solvation -34.142 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -144.926 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.269 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.411 kcal (6) G-S(sol) free energy of system = (1) + (5) -151.194 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds