Wall clock time and date at job start Tue Mar 31 2020 00:25:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31509 * 1 3 3 Si 1.86808 * 120.00033 * 2 1 4 4 H 1.48496 * 109.47120 * 87.09363 * 3 2 1 5 5 H 1.48495 * 109.46920 * 207.09511 * 3 2 1 6 6 H 1.48502 * 109.46719 * 327.09486 * 3 2 1 7 7 C 1.37875 * 120.00148 * 179.97438 * 2 1 3 8 8 H 1.08000 * 120.00291 * 1.40519 * 7 2 1 9 9 C 1.50708 * 120.00085 * 181.40791 * 7 2 1 10 10 H 1.09000 * 109.47094 * 24.79143 * 9 7 2 11 11 C 1.52999 * 109.46885 * 144.79205 * 9 7 2 12 12 C 1.50688 * 109.47354 * 293.80185 * 11 9 7 13 13 O 1.20825 * 120.00381 * 0.02562 * 12 11 9 14 14 O 1.34236 * 120.00296 * 179.97438 * 12 11 9 15 15 C 1.45203 * 117.00110 * 180.02562 * 14 12 11 16 16 C 1.50702 * 109.46690 * 180.02562 * 15 14 12 17 17 O 1.20821 * 119.99963 * 359.97438 * 16 15 14 18 18 O 1.34230 * 119.99404 * 180.02562 * 16 15 14 19 19 C 1.50699 * 109.46801 * 264.79304 * 9 7 2 20 20 C 1.38240 * 119.99980 * 306.64426 * 19 9 7 21 21 C 1.38238 * 119.99579 * 179.81083 * 20 19 9 22 22 C 1.38232 * 120.00406 * 0.39891 * 21 20 19 23 23 C 1.38237 * 119.99864 * 359.85742 * 22 21 20 24 24 C 1.38230 * 119.99847 * 126.92261 * 19 9 7 25 25 H 0.97000 * 120.00116 * 0.02562 * 1 2 3 26 26 H 1.08995 * 109.47237 * 53.81113 * 11 9 7 27 27 H 1.09010 * 109.46566 * 173.80374 * 11 9 7 28 28 H 1.08993 * 109.47507 * 300.00929 * 15 14 12 29 29 H 1.09005 * 109.46681 * 60.00962 * 15 14 12 30 30 H 0.96701 * 116.99471 * 179.97438 * 18 16 15 31 31 H 1.08000 * 120.00143 * 0.02562 * 20 19 9 32 32 H 1.08003 * 119.99602 * 180.23841 * 21 20 19 33 33 H 1.07995 * 120.00043 * 179.83073 * 22 21 20 34 34 H 1.07998 * 120.00385 * 179.97438 * 23 22 21 35 35 H 1.07996 * 120.00708 * 359.97438 * 24 19 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4352 2.0820 1.3982 5 1 3.5760 1.4232 -0.6377 6 1 1.4786 2.6342 -0.7606 7 6 2.0045 -1.1940 0.0005 8 1 1.4648 -2.1292 -0.0220 9 6 3.5112 -1.1942 0.0326 10 1 3.8652 -0.2664 0.4822 11 6 4.0035 -2.3826 0.8609 12 6 3.5997 -2.1934 2.3003 13 8 2.9811 -1.2092 2.6299 14 8 3.9263 -3.1188 3.2163 15 6 3.5040 -2.8709 4.5833 16 6 3.9570 -4.0077 5.4628 17 8 4.5721 -4.9321 4.9863 18 8 3.6762 -3.9937 6.7753 19 6 4.0435 -1.3064 -1.3728 20 6 3.6174 -2.3342 -2.1932 21 6 4.1028 -2.4348 -3.4837 22 6 5.0203 -1.5126 -3.9510 23 6 5.4504 -0.4879 -3.1288 24 6 4.9621 -0.3850 -1.8396 25 1 -0.4850 0.8400 -0.0004 26 1 3.5605 -3.3015 0.4770 27 1 5.0896 -2.4472 0.7937 28 1 3.9463 -1.9397 4.9370 29 1 2.4173 -2.7938 4.6195 30 1 3.9871 -4.7450 7.2987 31 1 2.9028 -3.0565 -1.8272 32 1 3.7670 -3.2356 -4.1260 33 1 5.4015 -1.5928 -4.9582 34 1 6.1676 0.2324 -3.4937 35 1 5.2981 0.4156 -1.1973 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001605582026.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:25:51 Heat of formation + Delta-G solvation = -173.251560 kcal Electronic energy + Delta-G solvation = -21106.709223 eV Core-core repulsion = 17648.026373 eV Total energy + Delta-G solvation = -3458.682850 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 278.103 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -41.78673 -40.99663 -39.99050 -37.73963 -37.07906 -35.90691 -33.78543 -31.59602 -31.16867 -30.01799 -27.93044 -24.63262 -23.37794 -23.02896 -22.06281 -20.90769 -19.30026 -19.05623 -18.45546 -18.11229 -17.90920 -17.38712 -16.69182 -16.60225 -16.18039 -15.69829 -15.41606 -14.83973 -14.57200 -14.41780 -14.12574 -13.93254 -13.65351 -13.56610 -13.28192 -12.94994 -12.68686 -12.66369 -12.11708 -11.91944 -11.87998 -11.81984 -11.74972 -11.54505 -11.35478 -11.04238 -10.64405 -9.59194 -9.31318 -8.22852 -6.22904 0.69247 0.72817 1.00246 1.11213 1.35806 1.36555 1.38838 1.45746 2.38451 2.41579 3.08352 3.23560 3.85262 3.96723 4.10150 4.11060 4.17718 4.26496 4.33682 4.40314 4.49249 4.61254 4.78269 4.86508 4.96421 5.15587 5.32059 5.37747 5.42514 5.47832 5.64035 5.78935 5.83406 6.02614 6.32240 6.37232 6.77869 6.84488 6.91195 7.42636 8.93459 Molecular weight = 278.10amu Principal moments of inertia in cm(-1) A = 0.016927 B = 0.005328 C = 0.004456 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1653.739964 B = 5253.821424 C = 6282.731736 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.950 5.950 2 C 0.026 3.974 3 Si 0.917 3.083 4 H -0.283 1.283 5 H -0.221 1.221 6 H -0.298 1.298 7 C -0.479 4.479 8 H 0.038 0.962 9 C 0.055 3.945 10 H 0.043 0.957 11 C -0.086 4.086 12 C 0.469 3.531 13 O -0.508 6.508 14 O -0.354 6.354 15 C 0.062 3.938 16 C 0.500 3.500 17 O -0.532 6.532 18 O -0.498 6.498 19 C -0.065 4.065 20 C -0.118 4.118 21 C -0.128 4.128 22 C -0.139 4.139 23 C -0.125 4.125 24 C -0.147 4.147 25 H 0.260 0.740 26 H 0.106 0.894 27 H 0.120 0.880 28 H 0.130 0.870 29 H 0.118 0.882 30 H 0.439 0.561 31 H 0.109 0.891 32 H 0.137 0.863 33 H 0.145 0.855 34 H 0.141 0.859 35 H 0.115 0.885 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.508 -5.358 4.070 14.203 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.591 5.591 2 C -0.171 4.171 3 Si 0.743 3.257 4 H -0.210 1.210 5 H -0.144 1.144 6 H -0.225 1.225 7 C -0.517 4.517 8 H 0.056 0.944 9 C 0.036 3.964 10 H 0.061 0.939 11 C -0.124 4.124 12 C 0.312 3.688 13 O -0.393 6.393 14 O -0.272 6.272 15 C -0.012 4.012 16 C 0.342 3.658 17 O -0.421 6.421 18 O -0.313 6.313 19 C -0.065 4.065 20 C -0.136 4.136 21 C -0.145 4.145 22 C -0.157 4.157 23 C -0.143 4.143 24 C -0.166 4.166 25 H 0.069 0.931 26 H 0.124 0.876 27 H 0.138 0.862 28 H 0.147 0.853 29 H 0.136 0.864 30 H 0.302 0.698 31 H 0.127 0.873 32 H 0.155 0.845 33 H 0.163 0.837 34 H 0.159 0.841 35 H 0.133 0.867 Dipole moment (debyes) X Y Z Total from point charges 12.202 -4.883 3.861 13.699 hybrid contribution -0.481 0.465 0.720 0.983 sum 11.722 -4.418 4.581 13.338 Atomic orbital electron populations 1.70025 1.08155 1.27390 1.53519 1.25644 0.95077 1.02333 0.94013 0.86191 0.81403 0.80029 0.78054 1.20955 1.14394 1.22538 1.20849 0.89676 0.92700 1.48430 0.94400 1.18094 0.94571 0.94515 0.89219 0.93886 1.21474 1.03414 1.02224 0.85260 1.24187 0.75894 0.79796 0.88884 1.90719 1.36649 1.30889 1.81092 1.86510 1.73405 1.49496 1.17767 1.22195 1.03341 0.96564 0.79139 1.22489 0.75479 0.85812 0.81996 1.90757 1.38773 1.36963 1.75645 1.84418 1.74736 1.52888 1.19254 1.20370 0.94017 0.94732 0.97417 1.21043 0.99280 0.98670 0.94608 1.21390 0.97747 1.00099 0.95311 1.21347 0.98463 0.95266 1.00585 1.21348 1.00506 0.98994 0.93466 1.21278 0.98456 0.99424 0.97393 0.93142 0.87560 0.86243 0.85261 0.86373 0.69776 0.87252 0.84522 0.83706 0.84129 0.86658 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -60.12 13.96 21.45 0.30 -59.82 16 2 C 0.03 1.53 5.47 84.65 0.46 2.00 16 3 Si 0.92 45.22 27.00 68.60 1.85 47.07 16 4 H -0.28 -14.18 7.11 99.48 0.71 -13.47 16 5 H -0.22 -9.60 4.72 99.48 0.47 -9.13 16 6 H -0.30 -14.83 7.11 99.48 0.71 -14.13 16 7 C -0.48 -26.00 6.88 25.60 0.18 -25.83 16 8 H 0.04 2.27 8.06 -2.91 -0.02 2.25 16 9 C 0.06 2.39 1.17 -12.28 -0.01 2.38 16 10 H 0.04 1.94 4.94 -2.39 -0.01 1.93 16 11 C -0.09 -3.13 5.08 29.84 0.15 -2.98 16 12 C 0.47 18.11 7.71 71.23 0.55 18.66 16 13 O -0.51 -23.28 14.77 21.97 0.32 -22.96 16 14 O -0.35 -11.84 9.76 -45.11 -0.44 -12.28 16 15 C 0.06 1.64 6.06 71.24 0.43 2.07 16 16 C 0.50 11.77 8.41 71.24 0.60 12.37 16 17 O -0.53 -16.30 17.26 28.35 0.49 -15.81 16 18 O -0.50 -7.63 13.42 -51.42 -0.69 -8.32 16 19 C -0.06 -2.54 4.65 -19.87 -0.09 -2.63 16 20 C -0.12 -4.34 8.93 22.27 0.20 -4.14 16 21 C -0.13 -3.86 10.05 22.27 0.22 -3.64 16 22 C -0.14 -3.76 10.05 22.27 0.22 -3.54 16 23 C -0.13 -3.61 10.05 22.27 0.22 -3.39 16 24 C -0.15 -5.14 8.70 22.27 0.19 -4.95 16 25 H 0.26 15.68 8.31 -92.71 -0.77 14.91 16 26 H 0.11 3.71 8.05 -2.39 -0.02 3.69 16 27 H 0.12 3.50 8.14 -2.38 -0.02 3.48 16 28 H 0.13 2.93 8.13 -2.39 -0.02 2.91 16 29 H 0.12 3.05 8.13 -2.38 -0.02 3.03 16 30 H 0.44 2.46 9.10 -74.06 -0.67 1.78 16 31 H 0.11 4.17 7.87 -2.91 -0.02 4.15 16 32 H 0.14 3.36 8.06 -2.91 -0.02 3.34 16 33 H 0.15 2.89 8.06 -2.91 -0.02 2.87 16 34 H 0.14 3.14 8.06 -2.91 -0.02 3.12 16 35 H 0.12 3.87 7.12 -2.91 -0.02 3.85 16 Total: -1.00 -76.53 310.34 5.37 -71.15 By element: Atomic # 1 Polarization: 14.36 SS G_CDS: 0.21 Total: 14.57 kcal Atomic # 6 Polarization: -16.94 SS G_CDS: 3.33 Total: -13.61 kcal Atomic # 7 Polarization: -60.12 SS G_CDS: 0.30 Total: -59.82 kcal Atomic # 8 Polarization: -59.05 SS G_CDS: -0.32 Total: -59.36 kcal Atomic # 14 Polarization: 45.22 SS G_CDS: 1.85 Total: 47.07 kcal Total: -76.53 5.37 -71.15 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001605582026.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -102.098 kcal (2) G-P(sol) polarization free energy of solvation -76.529 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -178.627 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.375 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.154 kcal (6) G-S(sol) free energy of system = (1) + (5) -173.252 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds