Wall clock time and date at job start Tue Mar 31 2020 01:00:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 C 1.38543 * 119.85276 * 2 1 4 4 C 1.38091 * 120.39302 * 180.28174 * 3 2 1 5 5 C 1.38659 * 120.08797 * 359.43760 * 4 3 2 6 6 O 1.35709 * 120.14970 * 180.30077 * 5 4 3 7 7 C 1.34312 * 117.00084 * 266.92624 * 6 5 4 8 8 O 1.20827 * 119.99904 * 5.19586 * 7 6 5 9 9 C 1.50701 * 119.99955 * 185.19332 * 7 6 5 10 10 C 1.53004 * 109.46741 * 179.97438 * 9 7 6 11 11 C 1.50701 * 109.46741 * 180.02562 * 10 9 7 12 12 H 1.07996 * 120.00147 * 0.02562 * 11 10 9 13 13 C 1.37884 * 120.00114 * 179.97438 * 11 10 9 14 14 N 1.31514 * 119.99684 * 0.02562 * 13 11 10 15 15 Si 1.86791 * 120.00344 * 180.02562 * 13 11 10 16 16 H 1.48502 * 109.47260 * 60.00180 * 15 13 11 17 17 H 1.48494 * 109.47505 * 180.02562 * 15 13 11 18 18 H 1.48508 * 109.47006 * 300.00327 * 15 13 11 19 19 C 1.40171 * 119.70351 * 0.27840 * 5 4 3 20 20 C 1.47457 * 120.19231 * 180.02562 * 19 5 4 21 21 O 1.21499 * 119.99927 * 0.02562 * 20 19 5 22 22 O 1.34747 * 119.99834 * 179.97438 * 20 19 5 23 23 C 1.37803 * 119.85014 * 179.71776 * 2 1 3 24 24 H 1.09002 * 109.47077 * 270.27941 * 1 2 3 25 25 H 1.09000 * 109.46823 * 30.27603 * 1 2 3 26 26 H 1.09002 * 109.47103 * 150.27920 * 1 2 3 27 27 H 1.08002 * 119.80262 * 0.02562 * 3 2 1 28 28 H 1.07994 * 119.95180 * 179.71730 * 4 3 2 29 29 H 1.08998 * 109.47383 * 299.99993 * 9 7 6 30 30 H 1.08996 * 109.46759 * 60.00005 * 9 7 6 31 31 H 1.09006 * 109.47174 * 299.99888 * 10 9 7 32 32 H 1.08996 * 109.47377 * 60.00522 * 10 9 7 33 33 H 0.96993 * 120.00372 * 180.02562 * 14 13 11 34 34 H 0.96694 * 116.99839 * 180.02562 * 22 20 19 35 35 H 1.07999 * 120.04180 * 0.02562 * 23 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1966 1.2016 0.0000 4 6 3.5775 1.2146 -0.0059 5 6 4.2839 0.0215 0.0000 6 8 5.6410 0.0329 0.0004 7 6 6.2517 -0.0318 -1.1941 8 8 5.5975 -0.0016 -2.2095 9 6 7.7529 -0.1419 -1.2679 10 6 8.1885 -0.1991 -2.7335 11 6 9.6896 -0.3098 -2.8072 12 1 10.2744 -0.3371 -1.8997 13 6 10.3165 -0.3774 -4.0335 14 7 9.6044 -0.3447 -5.1387 15 14 12.1771 -0.5154 -4.1250 16 1 12.6167 -1.7513 -3.4288 17 1 12.6001 -0.5708 -5.5473 18 1 12.7939 0.6669 -3.4713 19 6 3.5902 -1.1964 0.0059 20 6 4.3306 -2.4716 0.0128 21 8 5.5456 -2.4686 0.0137 22 8 3.6597 -3.6402 0.0190 23 6 2.1929 -1.1952 0.0059 24 1 -0.3633 0.0050 1.0277 25 1 -0.3633 0.8875 -0.5181 26 1 -0.3633 -0.8925 -0.5095 27 1 1.6510 2.1337 0.0004 28 1 4.1078 2.1554 -0.0104 29 1 8.2049 0.7260 -0.7877 30 1 8.0761 -1.0490 -0.7574 31 1 7.7365 -1.0673 -3.2133 32 1 7.8652 0.7078 -3.2443 33 1 10.0453 -0.3926 -6.0013 34 1 4.1883 -4.4498 0.0237 35 1 1.6511 -2.1295 0.0101 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001607811877.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:00:58 Heat of formation + Delta-G solvation = -154.124960 kcal Electronic energy + Delta-G solvation = -21108.366741 eV Core-core repulsion = 17650.513283 eV Total energy + Delta-G solvation = -3457.853458 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 278.103 amu Computer time = 1.27 seconds Orbital eigenvalues (eV) -41.30641 -39.81192 -38.74277 -36.65172 -35.96998 -33.56688 -32.47893 -31.67386 -31.06329 -27.24061 -25.84021 -24.88551 -23.01672 -22.31181 -20.72528 -19.85656 -18.15851 -17.95515 -17.03916 -16.70439 -16.50574 -15.82225 -15.48033 -14.86989 -14.73071 -14.48551 -14.39150 -13.97871 -13.40508 -13.11281 -12.99993 -12.41917 -12.35835 -12.16754 -11.97808 -11.68520 -11.54298 -11.21593 -10.94734 -10.89150 -10.64922 -10.39785 -10.02109 -10.00967 -9.63283 -9.32216 -9.17578 -8.71885 -8.34906 -5.98879 -4.03593 0.43275 0.96021 2.45277 2.75511 2.89146 3.05969 3.35132 3.39204 3.41726 3.66495 4.44946 4.46505 4.54953 4.71463 4.92699 4.99537 5.25272 5.28006 5.31979 5.36345 5.57285 5.63125 5.82003 5.89095 6.05704 6.17523 6.19990 6.27212 6.40127 6.46430 6.78519 6.94367 7.68543 7.76044 7.84868 8.00369 8.27630 8.42926 9.02902 9.59974 11.12225 Molecular weight = 278.10amu Principal moments of inertia in cm(-1) A = 0.028633 B = 0.003931 C = 0.003696 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 977.658649 B = 7121.656451 C = 7574.168474 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.112 4.112 2 C -0.107 4.107 3 C -0.069 4.069 4 C -0.131 4.131 5 C 0.156 3.844 6 O -0.297 6.297 7 C 0.472 3.528 8 O -0.494 6.494 9 C -0.098 4.098 10 C 0.035 3.965 11 C -0.528 4.528 12 H 0.059 0.941 13 C 0.059 3.941 14 N -0.890 5.890 15 Si 0.897 3.103 16 H -0.276 1.276 17 H -0.287 1.287 18 H -0.276 1.276 19 C -0.135 4.135 20 C 0.521 3.479 21 O -0.489 6.489 22 O -0.515 6.515 23 C -0.050 4.050 24 H 0.073 0.927 25 H 0.069 0.931 26 H 0.069 0.931 27 H 0.137 0.863 28 H 0.141 0.859 29 H 0.093 0.907 30 H 0.099 0.901 31 H 0.025 0.975 32 H 0.026 0.974 33 H 0.262 0.738 34 H 0.415 0.585 35 H 0.143 0.857 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.491 -0.516 13.233 22.744 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.168 4.168 2 C -0.108 4.108 3 C -0.087 4.087 4 C -0.150 4.150 5 C 0.114 3.886 6 O -0.213 6.213 7 C 0.317 3.683 8 O -0.378 6.378 9 C -0.135 4.135 10 C -0.003 4.003 11 C -0.566 4.566 12 H 0.077 0.923 13 C -0.143 4.143 14 N -0.529 5.529 15 Si 0.724 3.276 16 H -0.201 1.201 17 H -0.213 1.213 18 H -0.201 1.201 19 C -0.136 4.136 20 C 0.364 3.636 21 O -0.376 6.376 22 O -0.328 6.328 23 C -0.068 4.068 24 H 0.091 0.909 25 H 0.088 0.912 26 H 0.088 0.912 27 H 0.154 0.846 28 H 0.159 0.841 29 H 0.112 0.888 30 H 0.117 0.883 31 H 0.044 0.956 32 H 0.044 0.956 33 H 0.072 0.928 34 H 0.274 0.726 35 H 0.161 0.839 Dipole moment (debyes) X Y Z Total from point charges -18.572 -0.139 12.685 22.491 hybrid contribution 1.305 -0.649 -0.157 1.466 sum -17.267 -0.788 12.529 21.348 Atomic orbital electron populations 1.20782 0.90161 1.03293 1.02579 1.19938 0.96819 0.92630 1.01366 1.21175 0.93201 0.98201 0.96135 1.21277 0.94526 0.97436 1.01714 1.18591 0.82690 0.91563 0.95800 1.84675 1.16177 1.84473 1.35987 1.25166 0.92976 0.70704 0.79441 1.90651 1.67080 1.44794 1.35248 1.21809 0.82661 1.04247 1.04811 1.19028 0.95954 0.98808 0.86461 1.21112 0.91415 1.51488 0.92555 0.92278 1.25019 0.98459 0.95141 0.95697 1.69984 1.35508 1.49841 0.97530 0.86586 0.85327 0.78705 0.76946 1.20143 1.21266 1.20137 1.19286 0.94049 0.89873 1.10424 1.20619 0.85757 0.84076 0.73104 1.90975 1.14526 1.87766 1.44349 1.84504 1.45116 1.16877 1.86253 1.21221 0.91599 0.98883 0.95136 0.90880 0.91155 0.91161 0.84565 0.84081 0.88845 0.88253 0.95618 0.95597 0.92810 0.72588 0.83888 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -0.71 10.00 36.01 0.36 -0.35 16 2 C -0.11 -1.06 5.87 -104.67 -0.61 -1.67 16 3 C -0.07 -0.70 9.68 -39.52 -0.38 -1.09 16 4 C -0.13 -1.73 9.98 -39.48 -0.39 -2.12 16 5 C 0.16 2.58 4.93 -38.70 -0.19 2.39 16 6 O -0.30 -5.64 8.63 -30.36 -0.26 -5.90 16 7 C 0.47 10.27 6.60 36.01 0.24 10.51 16 8 O -0.49 -12.06 15.73 -18.75 -0.29 -12.35 16 9 C -0.10 -2.18 5.75 -27.88 -0.16 -2.34 16 10 C 0.03 0.95 4.26 -27.88 -0.12 0.84 16 11 C -0.53 -15.19 9.11 -34.44 -0.31 -15.51 16 12 H 0.06 1.60 7.74 -52.49 -0.41 1.20 16 13 C 0.06 1.72 5.46 -17.82 -0.10 1.62 16 14 N -0.89 -27.52 13.29 55.43 0.74 -26.78 16 15 Si 0.90 21.86 29.54 -169.99 -5.02 16.84 16 16 H -0.28 -6.59 7.11 56.52 0.40 -6.19 16 17 H -0.29 -6.92 7.11 56.52 0.40 -6.52 16 18 H -0.28 -6.55 7.11 56.52 0.40 -6.14 16 19 C -0.13 -2.04 5.88 -104.86 -0.62 -2.66 16 20 C 0.52 8.22 8.25 34.49 0.28 8.50 16 21 O -0.49 -9.41 14.97 -26.59 -0.40 -9.80 16 22 O -0.51 -5.83 12.68 -40.62 -0.52 -6.34 16 23 C -0.05 -0.58 9.25 -39.18 -0.36 -0.94 16 24 H 0.07 0.38 8.14 -51.93 -0.42 -0.05 16 25 H 0.07 0.38 8.08 -51.93 -0.42 -0.04 16 26 H 0.07 0.40 8.08 -51.93 -0.42 -0.02 16 27 H 0.14 0.95 8.06 -52.49 -0.42 0.52 16 28 H 0.14 1.65 8.06 -52.49 -0.42 1.22 16 29 H 0.09 1.86 8.14 -51.93 -0.42 1.43 16 30 H 0.10 2.14 8.14 -51.93 -0.42 1.72 16 31 H 0.03 0.77 8.10 -51.93 -0.42 0.35 16 32 H 0.03 0.76 8.10 -51.93 -0.42 0.34 16 33 H 0.26 7.61 8.31 -40.82 -0.34 7.27 16 34 H 0.42 2.92 9.11 45.56 0.42 3.34 16 35 H 0.14 1.33 7.61 -52.49 -0.40 0.93 16 LS Contribution 316.88 15.07 4.78 4.78 Total: -1.00 -36.35 316.88 -6.67 -43.02 By element: Atomic # 1 Polarization: 2.70 SS G_CDS: -3.32 Total: -0.62 kcal Atomic # 6 Polarization: -0.45 SS G_CDS: -2.37 Total: -2.82 kcal Atomic # 7 Polarization: -27.52 SS G_CDS: 0.74 Total: -26.78 kcal Atomic # 8 Polarization: -32.93 SS G_CDS: -1.47 Total: -34.40 kcal Atomic # 14 Polarization: 21.86 SS G_CDS: -5.02 Total: 16.84 kcal Total LS contribution 4.78 Total: 4.78 kcal Total: -36.35 -6.67 -43.02 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001607811877.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -111.108 kcal (2) G-P(sol) polarization free energy of solvation -36.348 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -147.456 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.669 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.017 kcal (6) G-S(sol) free energy of system = (1) + (5) -154.125 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.27 seconds