Wall clock time and date at job start Tue Mar 31 2020 00:25:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31507 * 1 3 3 Si 1.86802 * 119.99852 * 2 1 4 4 H 1.48497 * 109.47185 * 240.00086 * 3 2 1 5 5 H 1.48497 * 109.47122 * 0.02562 * 3 2 1 6 6 H 1.48499 * 109.47139 * 119.99862 * 3 2 1 7 7 C 1.37875 * 120.00572 * 180.02562 * 2 1 3 8 8 H 1.08001 * 120.00410 * 180.02562 * 7 2 1 9 9 C 1.50700 * 119.99704 * 359.97438 * 7 2 1 10 10 C 1.52996 * 109.47267 * 180.02562 * 9 7 2 11 11 C 1.50700 * 109.47267 * 180.02562 * 10 9 7 12 12 O 1.20832 * 120.00115 * 0.02562 * 11 10 9 13 13 O 1.34267 * 120.00269 * 179.97438 * 11 10 9 14 14 C 1.35919 * 117.00128 * 185.72007 * 13 11 10 15 15 C 1.38752 * 120.05534 * 263.20519 * 14 13 11 16 16 C 1.38124 * 119.94605 * 180.02562 * 15 14 13 17 17 C 1.38285 * 120.05736 * 0.02562 * 16 15 14 18 18 C 1.38250 * 120.10863 * 359.97438 * 17 16 15 19 19 C 1.38167 * 120.05558 * 359.95776 * 18 17 16 20 20 C 1.50697 * 120.02685 * 180.02562 * 19 18 17 21 21 C 1.50702 * 109.47306 * 265.00041 * 20 19 18 22 22 O 1.20827 * 119.99728 * 359.97438 * 21 20 19 23 23 O 1.34223 * 119.99968 * 180.02562 * 21 20 19 24 24 H 0.97007 * 120.00348 * 359.97438 * 1 2 3 25 25 H 1.09006 * 109.47260 * 59.99821 * 9 7 2 26 26 H 1.09000 * 109.47563 * 300.00369 * 9 7 2 27 27 H 1.09002 * 109.47479 * 60.00109 * 10 9 7 28 28 H 1.09005 * 109.47033 * 299.99826 * 10 9 7 29 29 H 1.08000 * 120.02863 * 0.27707 * 15 14 13 30 30 H 1.08004 * 119.96895 * 179.97438 * 16 15 14 31 31 H 1.07994 * 119.94964 * 179.97438 * 17 16 15 32 32 H 1.07995 * 119.97298 * 179.97438 * 18 17 16 33 33 H 1.09000 * 109.47102 * 25.00270 * 20 19 18 34 34 H 1.09003 * 109.47470 * 145.00187 * 20 19 18 35 35 H 0.96708 * 117.00099 * 179.97438 * 23 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2490 1.6178 0.0000 4 1 3.1028 1.6965 -1.2125 5 1 1.2840 2.7464 0.0006 6 1 3.1028 1.6965 1.2125 7 6 2.0046 -1.1940 -0.0005 8 1 3.0846 -1.1939 -0.0001 9 6 1.2511 -2.4991 -0.0005 10 6 2.2454 -3.6620 -0.0005 11 6 1.4919 -4.9671 -0.0012 12 8 0.2836 -4.9672 -0.0020 13 8 2.1633 -6.1299 -0.0018 14 6 1.4282 -7.2667 -0.1231 15 6 1.0685 -7.9856 1.0079 16 6 0.3219 -9.1409 0.8820 17 6 -0.0665 -9.5816 -0.3698 18 6 0.2907 -8.8671 -1.4983 19 6 1.0362 -7.7101 -1.3775 20 6 1.4247 -6.9316 -2.6079 21 6 2.8045 -7.3463 -3.0500 22 8 3.4104 -8.1874 -2.4292 23 8 3.3607 -6.7805 -4.1326 24 1 -0.4851 0.8401 0.0004 25 1 0.6241 -2.5567 -0.8903 26 1 0.6247 -2.5571 0.8896 27 1 2.8721 -3.6043 0.8895 28 1 2.8720 -3.6042 -0.8906 29 1 1.3684 -7.6399 1.9861 30 1 0.0420 -9.7009 1.7621 31 1 -0.6498 -10.4853 -0.4663 32 1 -0.0134 -9.2136 -2.4749 33 1 0.7111 -7.1343 -3.4065 34 1 1.4214 -5.8657 -2.3796 35 1 4.2476 -7.0786 -4.3771 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001608180213.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:25:38 Heat of formation + Delta-G solvation = -176.434102 kcal Electronic energy + Delta-G solvation = -21143.471699 eV Core-core repulsion = 17684.650844 eV Total energy + Delta-G solvation = -3458.820855 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 278.103 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -42.58564 -41.22639 -39.79324 -37.90730 -37.14032 -35.68159 -34.12538 -33.24035 -31.39986 -29.27572 -28.04199 -25.09032 -23.98840 -23.31161 -22.08314 -21.40653 -19.37897 -19.17994 -18.69650 -18.05490 -17.76798 -17.34419 -16.90691 -16.78982 -16.49185 -16.00268 -15.55473 -14.72596 -14.57903 -14.43083 -14.26594 -14.12521 -13.62219 -13.47863 -13.24045 -13.00103 -12.79651 -12.60055 -12.56035 -12.48304 -12.04150 -11.81602 -11.77728 -11.73299 -11.58495 -11.33824 -10.57231 -9.95781 -9.74475 -8.20149 -6.34121 -0.01643 0.22723 1.03469 1.13311 1.44039 1.47715 1.55362 1.76388 2.08137 2.43398 2.77843 3.13886 3.39137 3.63108 3.76627 4.00939 4.16656 4.27894 4.32037 4.36787 4.37539 4.43110 4.48612 4.67009 4.91681 4.94164 5.23637 5.30762 5.37151 5.40928 5.45867 5.51638 5.54881 5.78728 5.88765 6.11949 6.76577 6.84358 6.94601 7.36268 8.92098 Molecular weight = 278.10amu Principal moments of inertia in cm(-1) A = 0.021179 B = 0.004310 C = 0.003828 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1321.740847 B = 6495.206947 C = 7311.849814 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.934 5.934 2 C 0.000 4.000 3 Si 0.972 3.028 4 H -0.262 1.262 5 H -0.287 1.287 6 H -0.264 1.264 7 C -0.546 4.546 8 H 0.076 0.924 9 C 0.041 3.959 10 C -0.093 4.093 11 C 0.460 3.540 12 O -0.519 6.519 13 O -0.301 6.301 14 C 0.065 3.935 15 C -0.141 4.141 16 C -0.102 4.102 17 C -0.113 4.113 18 C -0.098 4.098 19 C -0.103 4.103 20 C -0.078 4.078 21 C 0.493 3.507 22 O -0.536 6.536 23 O -0.509 6.509 24 H 0.264 0.736 25 H -0.005 1.005 26 H -0.009 1.009 27 H 0.116 0.884 28 H 0.118 0.882 29 H 0.133 0.867 30 H 0.162 0.838 31 H 0.168 0.832 32 H 0.160 0.840 33 H 0.151 0.849 34 H 0.092 0.908 35 H 0.430 0.570 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.864 -19.393 -5.129 20.429 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.573 5.573 2 C -0.198 4.198 3 Si 0.796 3.204 4 H -0.187 1.187 5 H -0.213 1.213 6 H -0.189 1.189 7 C -0.584 4.584 8 H 0.095 0.905 9 C 0.004 3.996 10 C -0.131 4.131 11 C 0.306 3.694 12 O -0.406 6.406 13 O -0.217 6.217 14 C 0.024 3.976 15 C -0.160 4.160 16 C -0.119 4.119 17 C -0.131 4.131 18 C -0.116 4.116 19 C -0.104 4.104 20 C -0.115 4.115 21 C 0.336 3.664 22 O -0.426 6.426 23 O -0.323 6.323 24 H 0.073 0.927 25 H 0.013 0.987 26 H 0.009 0.991 27 H 0.135 0.865 28 H 0.136 0.864 29 H 0.151 0.849 30 H 0.180 0.820 31 H 0.185 0.815 32 H 0.178 0.822 33 H 0.169 0.831 34 H 0.110 0.890 35 H 0.292 0.708 Dipole moment (debyes) X Y Z Total from point charges 3.122 -19.385 -4.848 20.224 hybrid contribution 0.647 0.903 0.074 1.113 sum 3.769 -18.482 -4.774 19.457 Atomic orbital electron populations 1.70140 1.08167 1.28040 1.50995 1.26041 0.95682 1.03684 0.94392 0.85396 0.78099 0.77463 0.79451 1.18694 1.21254 1.18898 1.21574 0.94065 0.91210 1.51530 0.90540 1.18790 0.93512 0.91548 0.95744 1.21606 0.99555 0.85470 1.06426 1.25055 0.87542 0.85797 0.70989 1.90654 1.16981 1.87547 1.45404 1.84694 1.39883 1.13491 1.83634 1.18850 0.97376 0.86948 0.94448 1.21500 0.99255 0.97574 0.97640 1.21472 0.95902 0.94803 0.99755 1.21669 0.99206 1.00703 0.91504 1.21337 0.96311 0.92543 1.01361 1.19708 1.00073 0.98371 0.92235 1.20224 0.92525 1.01127 0.97663 1.23118 0.88364 0.77720 0.77219 1.90720 1.64053 1.32835 1.55012 1.84500 1.38764 1.64835 1.44220 0.92696 0.98683 0.99077 0.86550 0.86432 0.84948 0.81996 0.81459 0.82206 0.83120 0.88956 0.70798 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -57.33 13.29 21.45 0.28 -57.05 16 2 C 0.00 0.01 5.46 84.66 0.46 0.48 16 3 Si 0.97 43.22 29.54 68.60 2.03 45.24 16 4 H -0.26 -11.03 7.11 99.48 0.71 -10.32 16 5 H -0.29 -12.66 7.11 99.48 0.71 -11.95 16 6 H -0.26 -11.18 7.11 99.48 0.71 -10.47 16 7 C -0.55 -30.14 9.11 25.60 0.23 -29.91 16 8 H 0.08 3.86 7.74 -2.91 -0.02 3.83 16 9 C 0.04 2.21 4.26 29.85 0.13 2.34 16 10 C -0.09 -3.78 5.75 29.85 0.17 -3.61 16 11 C 0.46 18.62 6.57 71.24 0.47 19.09 16 12 O -0.52 -24.37 15.73 21.95 0.35 -24.02 16 13 O -0.30 -10.91 9.48 4.56 0.04 -10.87 16 14 C 0.06 2.14 4.92 22.51 0.11 2.25 16 15 C -0.14 -4.02 9.99 22.37 0.22 -3.80 16 16 C -0.10 -2.14 10.04 22.25 0.22 -1.91 16 17 C -0.11 -2.09 10.04 22.28 0.22 -1.87 16 18 C -0.10 -2.10 9.68 22.26 0.22 -1.88 16 19 C -0.10 -2.93 4.38 -19.77 -0.09 -3.02 16 20 C -0.08 -1.99 5.66 29.10 0.16 -1.82 16 21 C 0.49 12.45 8.32 71.24 0.59 13.04 16 22 O -0.54 -16.67 16.79 21.96 0.37 -16.30 16 23 O -0.51 -9.78 13.42 -51.35 -0.69 -10.47 16 24 H 0.26 15.25 8.31 -92.70 -0.77 14.48 16 25 H -0.01 -0.31 8.10 -2.38 -0.02 -0.33 16 26 H -0.01 -0.55 8.10 -2.39 -0.02 -0.57 16 27 H 0.12 4.24 8.14 -2.39 -0.02 4.22 16 28 H 0.12 4.21 8.14 -2.38 -0.02 4.19 16 29 H 0.13 3.53 8.06 -2.91 -0.02 3.50 16 30 H 0.16 2.25 8.06 -2.91 -0.02 2.22 16 31 H 0.17 1.74 8.06 -2.91 -0.02 1.72 16 32 H 0.16 2.30 8.06 -2.91 -0.02 2.27 16 33 H 0.15 2.71 8.05 -2.39 -0.02 2.69 16 34 H 0.09 2.74 6.58 -2.39 -0.02 2.72 16 35 H 0.43 4.32 9.10 -74.05 -0.67 3.64 16 Total: -1.00 -78.20 318.26 5.96 -72.24 By element: Atomic # 1 Polarization: 11.40 SS G_CDS: 0.45 Total: 11.84 kcal Atomic # 6 Polarization: -13.76 SS G_CDS: 3.13 Total: -10.63 kcal Atomic # 7 Polarization: -57.33 SS G_CDS: 0.28 Total: -57.05 kcal Atomic # 8 Polarization: -61.72 SS G_CDS: 0.07 Total: -61.65 kcal Atomic # 14 Polarization: 43.22 SS G_CDS: 2.03 Total: 45.24 kcal Total: -78.20 5.96 -72.24 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001608180213.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -104.191 kcal (2) G-P(sol) polarization free energy of solvation -78.200 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -182.390 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.956 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.243 kcal (6) G-S(sol) free energy of system = (1) + (5) -176.434 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds