Wall clock time and date at job start Tue Mar 31 2020 00:03:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13600 * 1 3 3 C 1.47197 * 179.97438 * 2 1 4 4 N 1.46495 * 109.47372 * 197.19431 * 3 2 1 5 5 C 1.37099 * 120.00363 * 263.95439 * 4 3 2 6 6 H 1.07999 * 120.00161 * 200.21390 * 5 4 3 7 7 C 1.38946 * 119.99624 * 20.21103 * 5 4 3 8 8 N 1.31410 * 119.99998 * 21.43011 * 7 5 4 9 9 Si 1.86797 * 119.99967 * 201.42433 * 7 5 4 10 10 H 1.48500 * 109.47295 * 60.00248 * 9 7 5 11 11 H 1.48500 * 109.47350 * 180.02562 * 9 7 5 12 12 H 1.48495 * 109.47379 * 300.00408 * 9 7 5 13 13 C 1.34783 * 119.99786 * 83.94884 * 4 3 2 14 14 O 1.21301 * 119.99689 * 180.02562 * 13 4 3 15 15 C 1.50694 * 119.99981 * 0.02562 * 13 4 3 16 16 N 1.46502 * 109.46992 * 180.02562 * 15 13 4 17 17 C 1.35042 * 124.88179 * 124.99712 * 16 15 13 18 18 C 1.35345 * 107.24389 * 179.71297 * 17 16 15 19 19 C 1.41549 * 105.50170 * 0.26312 * 18 17 16 20 20 C 1.47587 * 126.52594 * 179.97438 * 19 18 17 21 21 O 1.21486 * 119.99999 * 0.02562 * 20 19 18 22 22 O 1.34728 * 119.99837 * 179.97438 * 20 19 18 23 23 N 1.28470 * 124.87707 * 305.18626 * 16 15 13 24 24 H 1.09008 * 109.47493 * 77.19397 * 3 2 1 25 25 H 1.09007 * 109.47422 * 317.19762 * 3 2 1 26 26 H 0.97001 * 119.99989 * 179.97438 * 8 7 5 27 27 H 1.08995 * 109.47531 * 59.99480 * 15 13 4 28 28 H 1.08999 * 109.47093 * 299.99273 * 15 13 4 29 29 H 1.07997 * 126.38237 * 359.97438 * 17 16 15 30 30 H 1.08002 * 127.25579 * 180.28036 * 18 17 16 31 31 H 0.96703 * 116.99945 * 179.97438 * 22 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1360 0.0000 0.0000 3 6 2.6080 0.0007 0.0000 4 7 3.0958 1.3203 0.4083 5 6 3.4418 2.2471 -0.5409 6 1 4.0907 3.0703 -0.2806 7 6 2.9577 2.1273 -1.8377 8 7 1.8753 1.4199 -2.0723 9 14 3.8452 2.9719 -3.2478 10 1 5.2361 2.4590 -3.3353 11 1 3.1328 2.6914 -4.5201 12 1 3.8723 4.4373 -3.0088 13 6 3.2043 1.6233 1.7171 14 8 3.6077 2.7162 2.0552 15 6 2.8244 0.6045 2.7604 16 7 3.0301 1.1723 4.0952 17 6 2.0860 1.2436 5.0580 18 6 2.6586 1.8221 6.1394 19 6 3.9945 2.0950 5.7595 20 6 5.0337 2.7274 6.5951 21 8 4.7745 3.0688 7.7318 22 8 6.2701 2.9252 6.0977 23 7 4.1338 1.6770 4.5166 24 1 2.9715 -0.2270 -1.0022 25 1 2.9717 -0.7532 0.6983 26 1 1.5371 1.3366 -2.9776 27 1 3.4447 -0.2840 2.6435 28 1 1.7755 0.3338 2.6390 29 1 1.0653 0.8990 4.9812 30 1 2.1942 2.0312 7.0917 31 1 6.9169 3.3433 6.6824 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001608182782.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:03:20 Heat of formation + Delta-G solvation = 8.037369 kcal Electronic energy + Delta-G solvation = -20868.533270 eV Core-core repulsion = 17346.464106 eV Total energy + Delta-G solvation = -3522.069164 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 278.085 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -42.53557 -39.73261 -38.95953 -36.02702 -35.93724 -34.57503 -33.26288 -32.00321 -30.62588 -28.43691 -27.58004 -25.17482 -23.84453 -21.46780 -20.62368 -19.55864 -18.15969 -17.80948 -17.41246 -16.96715 -16.65590 -15.92887 -15.75472 -15.13648 -14.62089 -14.19204 -14.15050 -13.50811 -13.33067 -13.23231 -13.00815 -12.82218 -12.40565 -11.97020 -11.78845 -11.47463 -11.46070 -11.23684 -10.77523 -10.75186 -10.63543 -10.54015 -10.50450 -9.41963 -9.39078 -9.02226 -8.68039 -8.22218 -6.67002 -4.18236 1.53748 2.18204 2.46094 3.00221 3.14153 3.15503 3.23084 3.31768 3.37412 3.54624 3.73927 3.95939 4.36180 4.65754 4.71858 4.87197 4.91058 5.13111 5.15905 5.32913 5.53443 5.72768 5.80966 5.84322 6.26202 6.45285 6.50372 6.81593 7.32709 7.66476 7.89318 8.08470 8.20503 8.51654 8.79762 8.97457 9.46781 10.39036 Molecular weight = 278.08amu Principal moments of inertia in cm(-1) A = 0.023825 B = 0.004772 C = 0.004114 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1174.973096 B = 5865.973648 C = 6804.759811 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.463 5.463 2 C 0.239 3.761 3 C 0.216 3.784 4 N -0.434 5.434 5 C -0.315 4.315 6 H 0.110 0.890 7 C 0.036 3.964 8 N -0.874 5.874 9 Si 0.931 3.069 10 H -0.270 1.270 11 H -0.284 1.284 12 H -0.272 1.272 13 C 0.440 3.560 14 O -0.541 6.541 15 C 0.098 3.902 16 N -0.252 5.252 17 C -0.019 4.019 18 C -0.176 4.176 19 C -0.030 4.030 20 C 0.582 3.418 21 O -0.519 6.519 22 O -0.498 6.498 23 N -0.190 5.190 24 H 0.130 0.870 25 H 0.086 0.914 26 H 0.276 0.724 27 H 0.116 0.884 28 H 0.120 0.880 29 H 0.184 0.816 30 H 0.163 0.837 31 H 0.410 0.590 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.750 -5.908 8.492 11.004 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.143 5.143 2 C -0.080 4.080 3 C 0.089 3.911 4 N -0.155 5.155 5 C -0.442 4.442 6 H 0.127 0.873 7 C -0.169 4.169 8 N -0.512 5.512 9 Si 0.756 3.244 10 H -0.195 1.195 11 H -0.209 1.209 12 H -0.197 1.197 13 C 0.226 3.774 14 O -0.420 6.420 15 C -0.026 4.026 16 N -0.042 5.042 17 C -0.160 4.160 18 C -0.204 4.204 19 C -0.187 4.187 20 C 0.425 3.575 21 O -0.407 6.407 22 O -0.308 6.308 23 N -0.028 5.028 24 H 0.148 0.852 25 H 0.104 0.896 26 H 0.087 0.913 27 H 0.134 0.866 28 H 0.138 0.862 29 H 0.201 0.799 30 H 0.181 0.819 31 H 0.268 0.732 Dipole moment (debyes) X Y Z Total from point charges 2.569 -5.602 7.562 9.756 hybrid contribution 0.289 0.714 -0.058 0.773 sum 2.858 -4.888 7.504 9.400 Atomic orbital electron populations 1.80936 1.13451 1.08908 1.11010 1.29268 0.95324 0.92198 0.91206 1.18786 0.81751 0.86258 1.04335 1.43562 1.56441 1.11677 1.03856 1.19676 1.28125 1.08556 0.87821 0.87262 1.25321 0.94680 0.97562 0.99323 1.69812 1.17832 1.40832 1.22695 0.85911 0.79418 0.79863 0.79160 1.19485 1.20910 1.19693 1.19793 0.85974 0.88494 0.83158 1.90677 1.48693 1.23094 1.79586 1.22058 1.04612 0.97579 0.78331 1.45138 1.06712 1.40640 1.11678 1.22896 0.97241 1.06894 0.88992 1.21610 0.92643 1.05497 1.00642 1.20620 0.94222 1.11198 0.92635 1.19269 0.80477 0.74199 0.83566 1.90875 1.81507 1.49337 1.18954 1.84714 1.21765 1.74998 1.49318 1.73814 1.09442 1.09028 1.10520 0.85239 0.89606 0.91322 0.86580 0.86220 0.79905 0.81946 0.73186 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.46 -9.86 18.54 42.15 0.78 -9.07 16 2 C 0.24 4.61 12.82 -20.76 -0.27 4.34 16 3 C 0.22 3.68 4.91 -6.83 -0.03 3.64 16 4 N -0.43 -9.19 2.60 -117.93 -0.31 -9.49 16 5 C -0.32 -7.62 9.27 -14.93 -0.14 -7.76 16 6 H 0.11 2.85 7.43 -52.49 -0.39 2.46 16 7 C 0.04 0.83 4.84 -17.47 -0.08 0.75 16 8 N -0.87 -20.65 9.58 55.50 0.53 -20.12 16 9 Si 0.93 18.73 29.60 -169.99 -5.03 13.70 16 10 H -0.27 -5.30 7.11 56.52 0.40 -4.90 16 11 H -0.28 -5.70 7.11 56.52 0.40 -5.29 16 12 H -0.27 -5.68 7.11 56.52 0.40 -5.28 16 13 C 0.44 9.19 7.57 -10.99 -0.08 9.11 16 14 O -0.54 -13.81 15.30 5.54 0.08 -13.73 16 15 C 0.10 1.48 5.49 -5.20 -0.03 1.45 16 16 N -0.25 -4.14 3.17 -62.52 -0.20 -4.34 16 17 C -0.02 -0.26 11.40 -17.17 -0.20 -0.46 16 18 C -0.18 -2.55 10.81 -39.35 -0.43 -2.97 16 19 C -0.03 -0.51 7.17 -82.78 -0.59 -1.11 16 20 C 0.58 9.25 8.34 34.54 0.29 9.54 16 21 O -0.52 -8.74 17.71 -19.26 -0.34 -9.08 16 22 O -0.50 -6.74 13.44 -40.57 -0.55 -7.29 16 23 N -0.19 -3.56 10.88 33.41 0.36 -3.19 16 24 H 0.13 2.28 6.63 -51.92 -0.34 1.94 16 25 H 0.09 0.99 6.69 -51.93 -0.35 0.64 16 26 H 0.28 6.39 8.31 -40.82 -0.34 6.05 16 27 H 0.12 1.33 7.42 -51.93 -0.39 0.95 16 28 H 0.12 1.52 7.39 -51.93 -0.38 1.14 16 29 H 0.18 1.75 8.06 -52.49 -0.42 1.33 16 30 H 0.16 1.95 8.06 -52.49 -0.42 1.52 16 31 H 0.41 3.10 9.11 45.56 0.42 3.51 16 LS Contribution 293.85 15.07 4.43 4.43 Total: -1.00 -34.36 293.85 -3.21 -37.57 By element: Atomic # 1 Polarization: 5.50 SS G_CDS: -1.42 Total: 4.08 kcal Atomic # 6 Polarization: 18.10 SS G_CDS: -1.56 Total: 16.54 kcal Atomic # 7 Polarization: -47.40 SS G_CDS: 1.17 Total: -46.22 kcal Atomic # 8 Polarization: -29.29 SS G_CDS: -0.80 Total: -30.10 kcal Atomic # 14 Polarization: 18.73 SS G_CDS: -5.03 Total: 13.70 kcal Total LS contribution 4.43 Total: 4.43 kcal Total: -34.36 -3.21 -37.57 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001608182782.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 45.606 kcal (2) G-P(sol) polarization free energy of solvation -34.359 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 11.247 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.209 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.569 kcal (6) G-S(sol) free energy of system = (1) + (5) 8.037 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds