Wall clock time and date at job start Tue Mar 31 2020 00:03:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13600 * 1 3 3 C 1.47197 * 179.97438 * 2 1 4 4 N 1.46495 * 109.47372 * 197.19431 * 3 2 1 5 5 C 1.37099 * 120.00363 * 263.95439 * 4 3 2 6 6 H 1.07999 * 120.00161 * 200.21390 * 5 4 3 7 7 C 1.38946 * 119.99624 * 20.21103 * 5 4 3 8 8 N 1.31410 * 119.99998 * 21.43011 * 7 5 4 9 9 Si 1.86797 * 119.99967 * 201.42433 * 7 5 4 10 10 H 1.48500 * 109.47295 * 60.00248 * 9 7 5 11 11 H 1.48500 * 109.47350 * 180.02562 * 9 7 5 12 12 H 1.48495 * 109.47379 * 300.00408 * 9 7 5 13 13 C 1.34783 * 119.99786 * 83.94884 * 4 3 2 14 14 O 1.21301 * 119.99689 * 180.02562 * 13 4 3 15 15 C 1.50694 * 119.99981 * 0.02562 * 13 4 3 16 16 N 1.46502 * 109.46992 * 180.02562 * 15 13 4 17 17 C 1.35042 * 124.88179 * 124.99712 * 16 15 13 18 18 C 1.35345 * 107.24389 * 179.71297 * 17 16 15 19 19 C 1.41549 * 105.50170 * 0.26312 * 18 17 16 20 20 C 1.47587 * 126.52594 * 179.97438 * 19 18 17 21 21 O 1.21486 * 119.99999 * 0.02562 * 20 19 18 22 22 O 1.34728 * 119.99837 * 179.97438 * 20 19 18 23 23 N 1.28470 * 124.87707 * 305.18626 * 16 15 13 24 24 H 1.09008 * 109.47493 * 77.19397 * 3 2 1 25 25 H 1.09007 * 109.47422 * 317.19762 * 3 2 1 26 26 H 0.97001 * 119.99989 * 179.97438 * 8 7 5 27 27 H 1.08995 * 109.47531 * 59.99480 * 15 13 4 28 28 H 1.08999 * 109.47093 * 299.99273 * 15 13 4 29 29 H 1.07997 * 126.38237 * 359.97438 * 17 16 15 30 30 H 1.08002 * 127.25579 * 180.28036 * 18 17 16 31 31 H 0.96703 * 116.99945 * 179.97438 * 22 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1360 0.0000 0.0000 3 6 2.6080 0.0007 0.0000 4 7 3.0958 1.3203 0.4083 5 6 3.4418 2.2471 -0.5409 6 1 4.0907 3.0703 -0.2806 7 6 2.9577 2.1273 -1.8377 8 7 1.8753 1.4199 -2.0723 9 14 3.8452 2.9719 -3.2478 10 1 5.2361 2.4590 -3.3353 11 1 3.1328 2.6914 -4.5201 12 1 3.8723 4.4373 -3.0088 13 6 3.2043 1.6233 1.7171 14 8 3.6077 2.7162 2.0552 15 6 2.8244 0.6045 2.7604 16 7 3.0301 1.1723 4.0952 17 6 2.0860 1.2436 5.0580 18 6 2.6586 1.8221 6.1394 19 6 3.9945 2.0950 5.7595 20 6 5.0337 2.7274 6.5951 21 8 4.7745 3.0688 7.7318 22 8 6.2701 2.9252 6.0977 23 7 4.1338 1.6770 4.5166 24 1 2.9715 -0.2270 -1.0022 25 1 2.9717 -0.7532 0.6983 26 1 1.5371 1.3366 -2.9776 27 1 3.4447 -0.2840 2.6435 28 1 1.7755 0.3338 2.6390 29 1 1.0653 0.8990 4.9812 30 1 2.1942 2.0312 7.0917 31 1 6.9169 3.3433 6.6824 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001608182782.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:03:18 Heat of formation + Delta-G solvation = -17.442484 kcal Electronic energy + Delta-G solvation = -20869.638159 eV Core-core repulsion = 17346.464106 eV Total energy + Delta-G solvation = -3523.174053 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 278.085 amu Computer time = 1.08 seconds Orbital eigenvalues (eV) -43.69769 -40.94210 -40.51686 -37.63157 -37.10071 -36.20651 -34.57252 -33.69579 -31.75611 -29.79138 -29.03356 -26.73726 -25.16615 -22.62707 -21.87741 -20.96920 -19.79803 -18.94290 -18.62787 -18.40445 -18.11894 -17.20922 -17.08452 -16.56254 -16.07254 -15.71240 -15.61617 -14.75825 -14.67896 -14.47629 -14.31511 -14.09448 -13.89644 -13.47673 -13.30011 -13.07988 -12.88508 -12.61128 -12.37272 -12.18727 -12.10753 -11.97451 -11.81130 -11.14121 -10.83581 -10.21373 -10.05649 -9.94997 -8.44811 -6.01261 0.31286 1.08246 1.35274 1.38701 1.49498 1.56970 1.76580 1.99514 2.14246 2.22169 2.24844 2.34555 2.90580 2.98899 3.46906 3.54008 3.80639 3.95357 4.07261 4.11028 4.46690 4.59218 4.69488 4.75504 4.89024 5.32429 5.46317 5.47479 5.73917 5.99896 6.34617 6.80105 7.01703 7.07503 7.08723 7.26546 7.81561 8.58314 Molecular weight = 278.08amu Principal moments of inertia in cm(-1) A = 0.023825 B = 0.004772 C = 0.004114 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1174.973096 B = 5865.973648 C = 6804.759811 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.500 5.500 2 C 0.254 3.746 3 C 0.215 3.785 4 N -0.445 5.445 5 C -0.340 4.340 6 H 0.077 0.923 7 C 0.014 3.986 8 N -0.886 5.886 9 Si 0.982 3.018 10 H -0.260 1.260 11 H -0.278 1.278 12 H -0.287 1.287 13 C 0.434 3.566 14 O -0.598 6.598 15 C 0.106 3.894 16 N -0.263 5.263 17 C -0.007 4.007 18 C -0.184 4.184 19 C -0.052 4.052 20 C 0.584 3.416 21 O -0.535 6.535 22 O -0.502 6.502 23 N -0.235 5.235 24 H 0.125 0.875 25 H 0.152 0.848 26 H 0.276 0.724 27 H 0.159 0.841 28 H 0.150 0.850 29 H 0.227 0.773 30 H 0.184 0.816 31 H 0.433 0.567 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.355 -7.579 8.819 12.102 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.180 5.180 2 C -0.064 4.064 3 C 0.088 3.912 4 N -0.166 5.166 5 C -0.467 4.467 6 H 0.095 0.905 7 C -0.190 4.190 8 N -0.523 5.523 9 Si 0.807 3.193 10 H -0.185 1.185 11 H -0.203 1.203 12 H -0.213 1.213 13 C 0.223 3.777 14 O -0.481 6.481 15 C -0.018 4.018 16 N -0.052 5.052 17 C -0.147 4.147 18 C -0.211 4.211 19 C -0.208 4.208 20 C 0.427 3.573 21 O -0.424 6.424 22 O -0.314 6.314 23 N -0.073 5.073 24 H 0.142 0.858 25 H 0.169 0.831 26 H 0.086 0.914 27 H 0.176 0.824 28 H 0.168 0.832 29 H 0.243 0.757 30 H 0.201 0.799 31 H 0.295 0.705 Dipole moment (debyes) X Y Z Total from point charges 2.193 -7.305 7.883 10.969 hybrid contribution 0.435 1.278 -0.130 1.357 sum 2.628 -6.027 7.753 10.166 Atomic orbital electron populations 1.80952 1.14646 1.10070 1.12377 1.29668 0.95683 0.91047 0.90027 1.19203 0.80277 0.85630 1.06049 1.43695 1.56378 1.12681 1.03798 1.19469 1.28764 1.09182 0.89295 0.90481 1.25795 0.94888 0.97941 1.00345 1.69880 1.18153 1.41429 1.22876 0.85155 0.79100 0.78011 0.77071 1.18452 1.20325 1.21307 1.20751 0.84102 0.88963 0.83922 1.90647 1.50793 1.25975 1.80705 1.22178 1.07099 0.96503 0.75980 1.45313 1.06830 1.40797 1.12302 1.23609 0.98266 1.05139 0.87723 1.21990 0.91748 1.05438 1.01954 1.21066 0.95707 1.11411 0.92646 1.19257 0.80930 0.73883 0.83231 1.90856 1.81934 1.50171 1.19445 1.84672 1.21649 1.74976 1.50145 1.73747 1.11185 1.10913 1.11460 0.85758 0.83112 0.91392 0.82360 0.83199 0.75675 0.79902 0.70491 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.50 -20.37 18.54 20.00 0.37 -20.00 16 2 C 0.25 9.21 12.82 89.44 1.15 10.35 16 3 C 0.21 6.71 4.91 84.57 0.42 7.12 16 4 N -0.44 -18.36 2.60 -645.41 -1.68 -20.03 16 5 C -0.34 -16.60 9.27 84.04 0.78 -15.82 16 6 H 0.08 4.20 7.43 -2.91 -0.02 4.18 16 7 C 0.01 0.63 4.84 84.93 0.41 1.04 16 8 N -0.89 -41.13 9.58 21.66 0.21 -40.93 16 9 Si 0.98 38.35 29.60 68.60 2.03 40.38 16 10 H -0.26 -9.69 7.11 99.48 0.71 -8.98 16 11 H -0.28 -10.55 7.11 99.48 0.71 -9.84 16 12 H -0.29 -11.86 7.11 99.48 0.71 -11.15 16 13 C 0.43 17.70 7.57 87.65 0.66 18.36 16 14 O -0.60 -31.06 15.30 -3.09 -0.05 -31.11 16 15 C 0.11 2.83 5.49 85.63 0.47 3.30 16 16 N -0.26 -8.04 3.17 -351.71 -1.12 -9.15 16 17 C -0.01 -0.16 11.40 83.53 0.95 0.79 16 18 C -0.18 -4.96 10.81 22.42 0.24 -4.72 16 19 C -0.05 -1.73 7.17 42.43 0.30 -1.43 16 20 C 0.58 18.38 8.34 70.29 0.59 18.97 16 21 O -0.54 -17.74 17.71 19.88 0.35 -17.39 16 22 O -0.50 -13.41 13.44 -56.38 -0.76 -14.17 16 23 N -0.23 -8.62 10.88 -48.21 -0.52 -9.14 16 24 H 0.12 4.11 6.63 -2.38 -0.02 4.09 16 25 H 0.15 2.71 6.69 -2.38 -0.02 2.69 16 26 H 0.28 12.51 8.31 -92.71 -0.77 11.74 16 27 H 0.16 2.87 7.42 -2.39 -0.02 2.85 16 28 H 0.15 3.13 7.39 -2.39 -0.02 3.11 16 29 H 0.23 3.24 8.06 -2.91 -0.02 3.21 16 30 H 0.18 3.97 8.06 -2.91 -0.02 3.95 16 31 H 0.43 6.24 9.11 -74.06 -0.67 5.56 16 Total: -1.00 -77.50 293.85 5.35 -72.15 By element: Atomic # 1 Polarization: 10.88 SS G_CDS: 0.54 Total: 11.42 kcal Atomic # 6 Polarization: 32.00 SS G_CDS: 5.97 Total: 37.97 kcal Atomic # 7 Polarization: -96.52 SS G_CDS: -2.74 Total: -99.26 kcal Atomic # 8 Polarization: -62.22 SS G_CDS: -0.45 Total: -62.67 kcal Atomic # 14 Polarization: 38.35 SS G_CDS: 2.03 Total: 40.38 kcal Total: -77.50 5.35 -72.15 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001608182782.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 54.711 kcal (2) G-P(sol) polarization free energy of solvation -77.503 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -22.792 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.350 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.153 kcal (6) G-S(sol) free energy of system = (1) + (5) -17.442 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.08 seconds