Wall clock time and date at job start Tue Mar 31 2020 00:32:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31515 * 1 3 3 Si 1.86799 * 120.00096 * 2 1 4 4 H 1.48503 * 109.47039 * 179.97438 * 3 2 1 5 5 H 1.48501 * 109.46858 * 299.99458 * 3 2 1 6 6 H 1.48496 * 109.47324 * 59.99735 * 3 2 1 7 7 C 1.37877 * 119.99515 * 179.97438 * 2 1 3 8 8 H 1.08000 * 119.99684 * 180.02562 * 7 2 1 9 9 C 1.50698 * 120.00191 * 0.02562 * 7 2 1 10 10 C 1.53008 * 109.46905 * 179.97438 * 9 7 2 11 11 C 1.50698 * 109.46905 * 179.97438 * 10 9 7 12 12 O 1.20834 * 120.00247 * 0.02562 * 11 10 9 13 13 O 1.34265 * 120.00041 * 179.97438 * 11 10 9 14 14 C 1.35922 * 117.00102 * 185.77569 * 13 11 10 15 15 C 1.38752 * 120.05359 * 249.01534 * 14 13 11 16 16 C 1.38124 * 119.94281 * 179.97438 * 15 14 13 17 17 C 1.38283 * 120.05558 * 359.74689 * 16 15 14 18 18 C 1.38249 * 120.11210 * 0.50796 * 17 16 15 19 19 C 1.50702 * 119.97516 * 179.76681 * 18 17 16 20 20 C 1.50700 * 109.46993 * 269.72485 * 19 18 17 21 21 O 1.20826 * 120.00232 * 0.02562 * 20 19 18 22 22 O 1.34231 * 120.00002 * 179.97438 * 20 19 18 23 23 C 1.38162 * 120.05444 * 359.49057 * 18 17 16 24 24 H 0.97010 * 119.99907 * 0.02562 * 1 2 3 25 25 H 1.08999 * 109.46946 * 60.00179 * 9 7 2 26 26 H 1.09003 * 109.47221 * 299.99857 * 9 7 2 27 27 H 1.08999 * 109.47034 * 60.00402 * 10 9 7 28 28 H 1.08997 * 109.46791 * 300.00234 * 10 9 7 29 29 H 1.07996 * 120.02940 * 359.96235 * 15 14 13 30 30 H 1.07998 * 119.97207 * 180.02562 * 16 15 14 31 31 H 1.08005 * 119.94568 * 180.28215 * 17 16 15 32 32 H 1.08994 * 109.47244 * 149.72450 * 19 18 17 33 33 H 1.08999 * 109.46965 * 29.72596 * 19 18 17 34 34 H 0.96695 * 117.00197 * 180.02562 * 22 20 19 35 35 H 1.08000 * 120.02874 * 180.22684 * 23 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.7092 1.3463 0.0006 5 1 1.8905 2.3963 -1.2126 6 1 1.8904 2.3965 1.2124 7 6 2.0044 -1.1941 0.0005 8 1 3.0844 -1.1941 0.0010 9 6 1.2509 -2.4992 0.0005 10 6 2.2452 -3.6621 0.0005 11 6 1.4916 -4.9672 0.0012 12 8 0.2833 -4.9672 0.0011 13 8 2.1628 -6.1300 0.0008 14 6 1.4278 -7.2668 -0.1205 15 6 1.3149 -8.1391 0.9526 16 6 0.5669 -9.2935 0.8270 17 6 -0.0735 -9.5775 -0.3652 18 6 0.0417 -8.7126 -1.4376 19 6 -0.6532 -9.0279 -2.7372 20 6 0.2686 -9.8317 -3.6176 21 8 1.3761 -10.1195 -3.2294 22 8 -0.1409 -10.2288 -4.8326 23 6 0.7887 -7.5567 -1.3171 24 1 -0.4850 0.8401 -0.0004 25 1 0.6246 -2.5570 -0.8897 26 1 0.6239 -2.5567 0.8903 27 1 2.8717 -3.6044 0.8905 28 1 2.8718 -3.6043 -0.8894 29 1 1.8116 -7.9158 1.8852 30 1 0.4783 -9.9726 1.6621 31 1 -0.6617 -10.4784 -0.4600 32 1 -0.9190 -8.0990 -3.2417 33 1 -1.5567 -9.6034 -2.5358 34 1 0.4853 -10.7425 -5.3608 35 1 0.8754 -6.8795 -2.1539 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001610621916.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:32:04 Heat of formation + Delta-G solvation = -156.462630 kcal Electronic energy + Delta-G solvation = -20397.874400 eV Core-core repulsion = 16939.919573 eV Total energy + Delta-G solvation = -3457.954827 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 278.103 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -41.09040 -40.48152 -38.70785 -36.64625 -36.27154 -33.64262 -33.09068 -31.31863 -30.26349 -28.34698 -26.22635 -23.62766 -23.10992 -21.89906 -20.91416 -19.88135 -18.38360 -17.76633 -17.03989 -16.68354 -16.62318 -16.31215 -15.96503 -15.69290 -14.72443 -14.53893 -14.33994 -13.61003 -13.35381 -13.20024 -13.07275 -12.58565 -12.43278 -12.27976 -11.80941 -11.67604 -11.63919 -11.29843 -11.00669 -10.88504 -10.70773 -10.64402 -10.11931 -10.05983 -9.68599 -9.21379 -8.99477 -8.66980 -8.41540 -6.05058 -4.10156 1.02850 1.19087 1.94182 2.64580 2.76733 3.09497 3.29009 3.36612 3.40286 3.78912 4.25911 4.41761 4.60126 4.84399 4.96023 5.04793 5.14899 5.16456 5.23761 5.30646 5.40316 5.79956 5.83026 6.03821 6.12814 6.20108 6.21664 6.26588 6.32004 6.53969 6.76045 6.98901 7.61279 7.62053 7.67179 7.93433 8.20674 8.35597 8.96868 9.54278 11.05909 Molecular weight = 278.10amu Principal moments of inertia in cm(-1) A = 0.025788 B = 0.003258 C = 0.003063 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1085.518848 B = 8593.120264 C = 9139.886109 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.889 5.889 2 C 0.059 3.941 3 Si 0.896 3.104 4 H -0.272 1.272 5 H -0.283 1.283 6 H -0.283 1.283 7 C -0.529 4.529 8 H 0.060 0.940 9 C 0.033 3.967 10 C -0.101 4.101 11 C 0.454 3.546 12 O -0.486 6.486 13 O -0.305 6.305 14 C 0.098 3.902 15 C -0.116 4.116 16 C -0.104 4.104 17 C -0.108 4.108 18 C -0.069 4.069 19 C -0.072 4.072 20 C 0.478 3.522 21 O -0.504 6.504 22 O -0.519 6.519 23 C -0.108 4.108 24 H 0.262 0.738 25 H 0.026 0.974 26 H 0.027 0.973 27 H 0.096 0.904 28 H 0.096 0.904 29 H 0.133 0.867 30 H 0.132 0.868 31 H 0.125 0.875 32 H 0.119 0.881 33 H 0.119 0.881 34 H 0.410 0.590 35 H 0.127 0.873 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.252 -21.491 -4.383 21.935 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.527 5.527 2 C -0.143 4.143 3 Si 0.724 3.276 4 H -0.196 1.196 5 H -0.209 1.209 6 H -0.209 1.209 7 C -0.567 4.567 8 H 0.078 0.922 9 C -0.004 4.004 10 C -0.138 4.138 11 C 0.298 3.702 12 O -0.369 6.369 13 O -0.222 6.222 14 C 0.057 3.943 15 C -0.135 4.135 16 C -0.122 4.122 17 C -0.126 4.126 18 C -0.069 4.069 19 C -0.109 4.109 20 C 0.320 3.680 21 O -0.391 6.391 22 O -0.331 6.331 23 C -0.127 4.127 24 H 0.071 0.929 25 H 0.045 0.955 26 H 0.045 0.955 27 H 0.114 0.886 28 H 0.114 0.886 29 H 0.151 0.849 30 H 0.149 0.851 31 H 0.143 0.857 32 H 0.137 0.863 33 H 0.137 0.863 34 H 0.269 0.731 35 H 0.145 0.855 Dipole moment (debyes) X Y Z Total from point charges -0.774 -21.218 -4.020 21.609 hybrid contribution 0.789 0.544 -0.389 1.034 sum 0.015 -20.674 -4.409 21.139 Atomic orbital electron populations 1.70005 1.06101 1.26710 1.49899 1.25023 0.94868 0.99382 0.95055 0.86474 0.80035 0.83476 0.77642 1.19617 1.20940 1.20944 1.21173 0.93140 0.90526 1.51852 0.92181 1.19050 0.93197 0.89204 0.98997 1.21834 1.00773 0.86865 1.04361 1.25287 0.88220 0.85007 0.71704 1.90668 1.15632 1.86852 1.43752 1.84738 1.40125 1.13513 1.83803 1.18541 0.95254 0.87002 0.93511 1.21172 0.99307 0.95275 0.97726 1.20933 0.96855 0.96665 0.97785 1.20974 0.99984 0.98778 0.92912 1.18994 0.98772 0.95011 0.94126 1.20259 0.97441 1.01503 0.91704 1.23399 0.86997 0.77441 0.80174 1.90769 1.21874 1.53111 1.73359 1.84529 1.50764 1.68477 1.29347 1.21149 0.96653 0.97510 0.97375 0.92863 0.95531 0.95463 0.88602 0.88604 0.84946 0.85055 0.85688 0.86292 0.86335 0.73073 0.85509 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -26.73 13.29 55.43 0.74 -25.99 16 2 C 0.06 1.67 5.46 -17.82 -0.10 1.57 16 3 Si 0.90 21.26 29.54 -169.99 -5.02 16.24 16 4 H -0.27 -6.24 7.11 56.52 0.40 -5.84 16 5 H -0.28 -6.67 7.11 56.52 0.40 -6.26 16 6 H -0.28 -6.67 7.11 56.52 0.40 -6.27 16 7 C -0.53 -14.61 9.11 -34.44 -0.31 -14.92 16 8 H 0.06 1.57 7.74 -52.49 -0.41 1.16 16 9 C 0.03 0.85 4.26 -27.88 -0.12 0.73 16 10 C -0.10 -2.04 5.75 -27.88 -0.16 -2.20 16 11 C 0.45 9.03 7.73 36.00 0.28 9.31 16 12 O -0.49 -11.05 15.39 -18.75 -0.29 -11.34 16 13 O -0.31 -5.39 10.04 -23.61 -0.24 -5.63 16 14 C 0.10 1.60 5.27 -39.22 -0.21 1.39 16 15 C -0.12 -1.59 9.99 -39.43 -0.39 -1.99 16 16 C -0.10 -1.18 10.04 -39.61 -0.40 -1.57 16 17 C -0.11 -1.19 9.70 -39.56 -0.38 -1.57 16 18 C -0.07 -0.84 4.37 -104.65 -0.46 -1.30 16 19 C -0.07 -0.64 5.94 -29.03 -0.17 -0.81 16 20 C 0.48 4.75 8.32 36.01 0.30 5.05 16 21 O -0.50 -6.87 16.79 -18.75 -0.31 -7.18 16 22 O -0.52 -3.76 13.42 -39.26 -0.53 -4.29 16 23 C -0.11 -1.63 8.98 -39.43 -0.35 -1.98 16 24 H 0.26 7.37 8.31 -40.82 -0.34 7.03 16 25 H 0.03 0.74 8.10 -51.93 -0.42 0.32 16 26 H 0.03 0.77 8.10 -51.93 -0.42 0.35 16 27 H 0.10 1.76 8.14 -51.93 -0.42 1.34 16 28 H 0.10 1.76 8.14 -51.93 -0.42 1.34 16 29 H 0.13 1.59 8.06 -52.49 -0.42 1.16 16 30 H 0.13 1.07 8.06 -52.49 -0.42 0.64 16 31 H 0.13 0.99 8.06 -52.48 -0.42 0.57 16 32 H 0.12 0.94 8.08 -51.93 -0.42 0.52 16 33 H 0.12 0.72 8.08 -51.93 -0.42 0.30 16 34 H 0.41 1.35 9.10 45.56 0.41 1.77 16 35 H 0.13 1.87 8.06 -52.49 -0.42 1.45 16 LS Contribution 320.76 15.07 4.83 4.83 Total: -1.00 -35.43 320.76 -6.64 -42.07 By element: Atomic # 1 Polarization: 2.92 SS G_CDS: -3.34 Total: -0.43 kcal Atomic # 6 Polarization: -5.81 SS G_CDS: -2.48 Total: -8.29 kcal Atomic # 7 Polarization: -26.73 SS G_CDS: 0.74 Total: -25.99 kcal Atomic # 8 Polarization: -27.07 SS G_CDS: -1.37 Total: -28.44 kcal Atomic # 14 Polarization: 21.26 SS G_CDS: -5.02 Total: 16.24 kcal Total LS contribution 4.83 Total: 4.83 kcal Total: -35.43 -6.64 -42.07 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001610621916.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -114.393 kcal (2) G-P(sol) polarization free energy of solvation -35.429 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -149.822 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.641 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.069 kcal (6) G-S(sol) free energy of system = (1) + (5) -156.463 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds