Wall clock time and date at job start Tue Mar 31 2020 00:32:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31515 * 1 3 3 Si 1.86799 * 120.00096 * 2 1 4 4 H 1.48503 * 109.47039 * 179.97438 * 3 2 1 5 5 H 1.48501 * 109.46858 * 299.99458 * 3 2 1 6 6 H 1.48496 * 109.47324 * 59.99735 * 3 2 1 7 7 C 1.37877 * 119.99515 * 179.97438 * 2 1 3 8 8 H 1.08000 * 119.99684 * 180.02562 * 7 2 1 9 9 C 1.50698 * 120.00191 * 0.02562 * 7 2 1 10 10 C 1.53008 * 109.46905 * 179.97438 * 9 7 2 11 11 C 1.50698 * 109.46905 * 179.97438 * 10 9 7 12 12 O 1.20834 * 120.00247 * 0.02562 * 11 10 9 13 13 O 1.34265 * 120.00041 * 179.97438 * 11 10 9 14 14 C 1.35922 * 117.00102 * 185.77569 * 13 11 10 15 15 C 1.38752 * 120.05359 * 249.01534 * 14 13 11 16 16 C 1.38124 * 119.94281 * 179.97438 * 15 14 13 17 17 C 1.38283 * 120.05558 * 359.74689 * 16 15 14 18 18 C 1.38249 * 120.11210 * 0.50796 * 17 16 15 19 19 C 1.50702 * 119.97516 * 179.76681 * 18 17 16 20 20 C 1.50700 * 109.46993 * 269.72485 * 19 18 17 21 21 O 1.20826 * 120.00232 * 0.02562 * 20 19 18 22 22 O 1.34231 * 120.00002 * 179.97438 * 20 19 18 23 23 C 1.38162 * 120.05444 * 359.49057 * 18 17 16 24 24 H 0.97010 * 119.99907 * 0.02562 * 1 2 3 25 25 H 1.08999 * 109.46946 * 60.00179 * 9 7 2 26 26 H 1.09003 * 109.47221 * 299.99857 * 9 7 2 27 27 H 1.08999 * 109.47034 * 60.00402 * 10 9 7 28 28 H 1.08997 * 109.46791 * 300.00234 * 10 9 7 29 29 H 1.07996 * 120.02940 * 359.96235 * 15 14 13 30 30 H 1.07998 * 119.97207 * 180.02562 * 16 15 14 31 31 H 1.08005 * 119.94568 * 180.28215 * 17 16 15 32 32 H 1.08994 * 109.47244 * 149.72450 * 19 18 17 33 33 H 1.08999 * 109.46965 * 29.72596 * 19 18 17 34 34 H 0.96695 * 117.00197 * 180.02562 * 22 20 19 35 35 H 1.08000 * 120.02874 * 180.22684 * 23 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.7092 1.3463 0.0006 5 1 1.8905 2.3963 -1.2126 6 1 1.8904 2.3965 1.2124 7 6 2.0044 -1.1941 0.0005 8 1 3.0844 -1.1941 0.0010 9 6 1.2509 -2.4992 0.0005 10 6 2.2452 -3.6621 0.0005 11 6 1.4916 -4.9672 0.0012 12 8 0.2833 -4.9672 0.0011 13 8 2.1628 -6.1300 0.0008 14 6 1.4278 -7.2668 -0.1205 15 6 1.3149 -8.1391 0.9526 16 6 0.5669 -9.2935 0.8270 17 6 -0.0735 -9.5775 -0.3652 18 6 0.0417 -8.7126 -1.4376 19 6 -0.6532 -9.0279 -2.7372 20 6 0.2686 -9.8317 -3.6176 21 8 1.3761 -10.1195 -3.2294 22 8 -0.1409 -10.2288 -4.8326 23 6 0.7887 -7.5567 -1.3171 24 1 -0.4850 0.8401 -0.0004 25 1 0.6246 -2.5570 -0.8897 26 1 0.6239 -2.5567 0.8903 27 1 2.8717 -3.6044 0.8905 28 1 2.8718 -3.6043 -0.8894 29 1 1.8116 -7.9158 1.8852 30 1 0.4783 -9.9726 1.6621 31 1 -0.6617 -10.4784 -0.4600 32 1 -0.9190 -8.0990 -3.2417 33 1 -1.5567 -9.6034 -2.5358 34 1 0.4853 -10.7425 -5.3608 35 1 0.8754 -6.8795 -2.1539 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001610621916.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:32:04 Heat of formation + Delta-G solvation = -178.863881 kcal Electronic energy + Delta-G solvation = -20398.845791 eV Core-core repulsion = 16939.919573 eV Total energy + Delta-G solvation = -3458.926218 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 278.103 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -42.40748 -41.34033 -39.81233 -38.02324 -37.06841 -35.68394 -33.98376 -33.21935 -31.40056 -29.23465 -28.12993 -25.18639 -23.98621 -23.29324 -22.04097 -21.32454 -19.29809 -19.09208 -18.59286 -17.89109 -17.70007 -17.33965 -17.23308 -16.91955 -16.49408 -16.01109 -15.41092 -14.72174 -14.62961 -14.42277 -14.27411 -14.16368 -13.60596 -13.41686 -13.23816 -12.89300 -12.77971 -12.64319 -12.51090 -12.48000 -12.05203 -11.93607 -11.78965 -11.68414 -11.53696 -11.29522 -10.59821 -9.97178 -9.73630 -8.21264 -6.35047 -0.00829 0.19488 1.08345 1.19405 1.43491 1.44211 1.57709 1.73220 2.13045 2.42596 2.79778 3.12787 3.41887 3.74076 3.77271 4.01356 4.18970 4.20596 4.36006 4.38252 4.42320 4.49379 4.54475 4.66421 4.91352 4.94665 5.19708 5.26397 5.36773 5.40952 5.46735 5.51598 5.60808 5.78506 5.86601 6.11378 6.77197 6.84462 6.98541 7.35300 8.91510 Molecular weight = 278.10amu Principal moments of inertia in cm(-1) A = 0.025788 B = 0.003258 C = 0.003063 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1085.518848 B = 8593.120264 C = 9139.886109 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.935 5.935 2 C -0.003 4.003 3 Si 0.974 3.026 4 H -0.254 1.254 5 H -0.280 1.280 6 H -0.280 1.280 7 C -0.544 4.544 8 H 0.078 0.922 9 C 0.039 3.961 10 C -0.091 4.091 11 C 0.462 3.538 12 O -0.523 6.523 13 O -0.298 6.298 14 C 0.052 3.948 15 C -0.129 4.129 16 C -0.100 4.100 17 C -0.103 4.103 18 C -0.074 4.074 19 C -0.072 4.072 20 C 0.487 3.513 21 O -0.548 6.548 22 O -0.511 6.511 23 C -0.132 4.132 24 H 0.264 0.736 25 H -0.008 1.008 26 H -0.008 1.008 27 H 0.120 0.880 28 H 0.118 0.882 29 H 0.143 0.857 30 H 0.169 0.831 31 H 0.164 0.836 32 H 0.126 0.874 33 H 0.155 0.845 34 H 0.428 0.572 35 H 0.114 0.886 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.314 -22.927 -4.452 23.357 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.574 5.574 2 C -0.201 4.201 3 Si 0.798 3.202 4 H -0.178 1.178 5 H -0.206 1.206 6 H -0.206 1.206 7 C -0.582 4.582 8 H 0.096 0.904 9 C 0.002 3.998 10 C -0.129 4.129 11 C 0.307 3.693 12 O -0.410 6.410 13 O -0.214 6.214 14 C 0.011 3.989 15 C -0.147 4.147 16 C -0.118 4.118 17 C -0.121 4.121 18 C -0.074 4.074 19 C -0.109 4.109 20 C 0.331 3.669 21 O -0.438 6.438 22 O -0.324 6.324 23 C -0.151 4.151 24 H 0.073 0.927 25 H 0.010 0.990 26 H 0.010 0.990 27 H 0.138 0.862 28 H 0.136 0.864 29 H 0.161 0.839 30 H 0.186 0.814 31 H 0.182 0.818 32 H 0.144 0.856 33 H 0.173 0.827 34 H 0.290 0.710 35 H 0.133 0.867 Dipole moment (debyes) X Y Z Total from point charges -0.182 -22.689 -4.115 23.060 hybrid contribution 0.540 0.814 -0.420 1.064 sum 0.358 -21.874 -4.535 22.342 Atomic orbital electron populations 1.70164 1.08186 1.27907 1.51171 1.26087 0.95743 1.03823 0.94467 0.85259 0.79268 0.78052 0.77591 1.17760 1.20570 1.20594 1.21649 0.94124 0.91185 1.51206 0.90434 1.18810 0.93599 0.91726 0.95645 1.21587 0.99459 0.85236 1.06578 1.25065 0.87517 0.85869 0.70814 1.90643 1.17136 1.87545 1.45627 1.84684 1.39945 1.13496 1.83283 1.18997 0.97650 0.86952 0.95295 1.21459 0.99932 0.95876 0.97444 1.21424 0.95226 0.95997 0.99143 1.21523 0.99114 0.99355 0.92072 1.19386 0.97854 0.94027 0.96149 1.20371 0.98045 1.02365 0.90137 1.23486 0.86232 0.76625 0.80587 1.90762 1.23621 1.55027 1.74404 1.84489 1.51149 1.68354 1.28452 1.21279 0.97993 0.98964 0.96853 0.92709 0.98996 0.98981 0.86229 0.86353 0.83899 0.81357 0.81822 0.85621 0.82727 0.70988 0.86742 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -57.80 13.29 21.45 0.28 -57.51 16 2 C 0.00 -0.19 5.46 84.65 0.46 0.28 16 3 Si 0.97 43.60 29.54 68.60 2.03 45.63 16 4 H -0.25 -10.56 7.11 99.48 0.71 -9.85 16 5 H -0.28 -12.29 7.11 99.48 0.71 -11.58 16 6 H -0.28 -12.31 7.11 99.48 0.71 -11.60 16 7 C -0.54 -30.30 9.11 25.60 0.23 -30.06 16 8 H 0.08 3.96 7.74 -2.91 -0.02 3.93 16 9 C 0.04 2.13 4.26 29.85 0.13 2.26 16 10 C -0.09 -3.74 5.75 29.85 0.17 -3.57 16 11 C 0.46 19.01 7.73 71.24 0.55 19.56 16 12 O -0.52 -25.06 15.39 21.94 0.34 -24.72 16 13 O -0.30 -10.83 10.04 4.55 0.05 -10.78 16 14 C 0.05 1.72 5.27 22.51 0.12 1.84 16 15 C -0.13 -3.44 9.99 22.37 0.22 -3.22 16 16 C -0.10 -2.01 10.04 22.25 0.22 -1.79 16 17 C -0.10 -1.97 9.70 22.28 0.22 -1.75 16 18 C -0.07 -1.72 4.37 -19.88 -0.09 -1.80 16 19 C -0.07 -1.14 5.94 29.10 0.17 -0.96 16 20 C 0.49 8.86 8.32 71.24 0.59 9.46 16 21 O -0.55 -14.47 16.79 21.96 0.37 -14.10 16 22 O -0.51 -6.27 13.42 -51.43 -0.69 -6.96 16 23 C -0.13 -4.07 8.98 22.37 0.20 -3.87 16 24 H 0.26 15.25 8.31 -92.70 -0.77 14.48 16 25 H -0.01 -0.51 8.10 -2.39 -0.02 -0.52 16 26 H -0.01 -0.50 8.10 -2.39 -0.02 -0.52 16 27 H 0.12 4.32 8.14 -2.39 -0.02 4.30 16 28 H 0.12 4.30 8.14 -2.39 -0.02 4.28 16 29 H 0.14 3.34 8.06 -2.91 -0.02 3.32 16 30 H 0.17 2.06 8.06 -2.91 -0.02 2.04 16 31 H 0.16 1.83 8.06 -2.91 -0.02 1.80 16 32 H 0.13 1.83 8.08 -2.39 -0.02 1.81 16 33 H 0.16 1.29 8.08 -2.39 -0.02 1.27 16 34 H 0.43 1.93 9.10 -74.06 -0.67 1.26 16 35 H 0.11 3.62 8.06 -2.91 -0.02 3.59 16 Total: -1.00 -80.09 320.76 6.02 -74.06 By element: Atomic # 1 Polarization: 7.57 SS G_CDS: 0.44 Total: 8.01 kcal Atomic # 6 Polarization: -16.84 SS G_CDS: 3.21 Total: -13.63 kcal Atomic # 7 Polarization: -57.80 SS G_CDS: 0.28 Total: -57.51 kcal Atomic # 8 Polarization: -56.62 SS G_CDS: 0.06 Total: -56.56 kcal Atomic # 14 Polarization: 43.60 SS G_CDS: 2.03 Total: 45.63 kcal Total: -80.09 6.02 -74.06 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001610621916.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -104.799 kcal (2) G-P(sol) polarization free energy of solvation -80.088 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -184.887 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.023 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.065 kcal (6) G-S(sol) free energy of system = (1) + (5) -178.864 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds