Wall clock time and date at job start Tue Mar 31 2020 00:09:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.30998 * 1 3 3 C 1.50698 * 119.99853 * 2 1 4 4 H 1.09004 * 109.47321 * 120.00083 * 3 2 1 5 5 O 1.45204 * 109.47442 * 359.97438 * 3 2 1 6 6 C 1.34226 * 116.99827 * 89.99710 * 5 3 2 7 7 O 1.20823 * 120.00134 * 0.02562 * 6 5 3 8 8 C 1.50701 * 119.99497 * 180.02562 * 6 5 3 9 9 S 1.81004 * 109.46909 * 180.02562 * 8 6 5 10 10 C 1.76201 * 100.00203 * 180.02562 * 9 8 6 11 11 H 1.08002 * 119.99759 * 359.97438 * 10 9 8 12 12 C 1.38794 * 120.00380 * 179.97438 * 10 9 8 13 13 N 1.31629 * 119.99472 * 0.02562 * 12 10 9 14 14 Si 1.86797 * 120.00364 * 179.97438 * 12 10 9 15 15 H 1.48500 * 109.46982 * 60.00099 * 14 12 10 16 16 H 1.48495 * 109.47255 * 180.02562 * 14 12 10 17 17 H 1.48504 * 109.47079 * 300.00300 * 14 12 10 18 18 C 1.50703 * 109.47293 * 239.99432 * 3 2 1 19 19 C 1.38235 * 120.00292 * 265.00268 * 18 3 2 20 20 C 1.38230 * 119.99899 * 179.97438 * 19 18 3 21 21 C 1.38235 * 120.00326 * 359.95697 * 20 19 18 22 22 C 1.38234 * 119.99814 * 359.97438 * 21 20 19 23 23 C 1.38234 * 119.99503 * 84.97561 * 18 3 2 24 24 H 1.08002 * 120.00081 * 179.97438 * 1 2 3 25 25 H 1.08005 * 119.99910 * 0.02562 * 1 2 3 26 26 H 1.07994 * 120.00182 * 179.97438 * 2 1 3 27 27 H 1.09000 * 109.47343 * 299.99668 * 8 6 5 28 28 H 1.08998 * 109.47307 * 60.00191 * 8 6 5 29 29 H 0.97008 * 119.99788 * 179.97438 * 13 12 10 30 30 H 1.08001 * 119.99730 * 359.97438 * 19 18 3 31 31 H 1.08000 * 120.00376 * 179.97438 * 20 19 18 32 32 H 1.08000 * 120.00616 * 179.72578 * 21 20 19 33 33 H 1.08001 * 120.00299 * 179.97438 * 22 21 20 34 34 H 1.07997 * 120.00455 * 0.02562 * 23 18 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0634 1.3051 0.0000 4 1 2.6901 1.3629 0.8900 5 8 1.1199 2.4088 -0.0006 6 6 0.7234 2.8722 1.1951 7 8 1.1510 2.3725 2.2087 8 6 -0.2550 4.0157 1.2733 9 16 -0.5885 4.4068 3.0088 10 6 -1.7274 5.7364 2.8095 11 1 -2.0076 6.0635 1.8191 12 6 -2.2643 6.3635 3.9252 13 7 -1.9222 5.9652 5.1323 14 14 -3.4710 7.7736 3.7139 15 1 -4.6604 7.2988 2.9623 16 1 -3.8935 8.2679 5.0490 17 1 -2.8181 8.8756 2.9625 18 6 2.9300 1.3849 -1.2304 19 6 4.2559 0.9990 -1.1683 20 6 5.0505 1.0718 -2.2970 21 6 4.5190 1.5296 -3.4882 22 6 3.1927 1.9142 -3.5507 23 6 2.3986 1.8436 -2.4213 24 1 -0.5400 -0.9353 -0.0004 25 1 -0.5400 0.9354 -0.0004 26 1 1.8500 -0.9352 0.0004 27 1 0.1680 4.8903 0.7790 28 1 -1.1844 3.7331 0.7790 29 1 -2.2972 6.4037 5.9121 30 1 4.6710 0.6407 -0.2378 31 1 6.0866 0.7707 -2.2484 32 1 5.1410 1.5907 -4.3690 33 1 2.7775 2.2722 -4.4811 34 1 1.3627 2.1450 -2.4699 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001617550974.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:09:03 Heat of formation + Delta-G solvation = -40.249144 kcal Electronic energy + Delta-G solvation = -18204.782578 eV Core-core repulsion = 15194.620017 eV Total energy + Delta-G solvation = -3010.162561 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 278.076 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -40.51662 -39.14555 -36.52185 -33.81478 -32.49336 -31.40901 -31.04640 -29.69589 -26.30971 -25.53041 -22.89321 -21.78650 -21.31046 -19.44356 -17.97309 -17.41713 -16.95190 -16.65741 -15.82881 -15.08028 -14.88901 -14.84658 -14.45808 -14.12890 -13.61280 -13.49832 -13.29357 -12.75910 -12.67530 -12.45250 -11.98693 -11.58797 -11.41875 -11.18756 -11.10501 -11.06771 -10.83583 -10.57978 -10.03480 -9.92765 -9.47050 -9.11482 -9.08173 -8.92342 -8.37513 -6.61287 -6.27908 -4.00820 1.10273 1.24725 2.19952 2.61752 2.64247 3.21432 3.22884 3.26775 3.47654 3.64417 4.14193 4.51790 4.73034 4.76301 4.88031 4.97398 5.01857 5.07881 5.20734 5.28094 5.35978 5.43028 5.58505 5.74124 5.75505 5.85978 5.90295 6.05795 6.24542 6.33691 6.39834 6.49185 6.56782 6.78782 6.81529 7.54285 8.14453 8.29326 9.17433 10.79528 Molecular weight = 278.08amu Principal moments of inertia in cm(-1) A = 0.031026 B = 0.003500 C = 0.003366 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 902.260793 B = 7998.074572 C = 8315.800369 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.168 4.168 2 C -0.176 4.176 3 C 0.157 3.843 4 H 0.102 0.898 5 O -0.350 6.350 6 C 0.478 3.522 7 O -0.483 6.483 8 C -0.129 4.129 9 S -0.057 6.057 10 C -0.538 4.538 11 H 0.075 0.925 12 C 0.075 3.925 13 N -0.867 5.867 14 Si 0.922 3.078 15 H -0.273 1.273 16 H -0.282 1.282 17 H -0.273 1.273 18 C -0.080 4.080 19 C -0.107 4.107 20 C -0.122 4.122 21 C -0.119 4.119 22 C -0.123 4.123 23 C -0.089 4.089 24 H 0.103 0.897 25 H 0.103 0.897 26 H 0.124 0.876 27 H 0.103 0.897 28 H 0.102 0.898 29 H 0.270 0.730 30 H 0.125 0.875 31 H 0.123 0.877 32 H 0.121 0.879 33 H 0.123 0.877 34 H 0.129 0.871 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.906 -10.297 -16.071 21.504 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.194 4.194 3 C 0.102 3.898 4 H 0.120 0.880 5 O -0.269 6.269 6 C 0.319 3.681 7 O -0.367 6.367 8 C -0.277 4.277 9 S 0.170 5.830 10 C -0.686 4.686 11 H 0.094 0.906 12 C -0.135 4.135 13 N -0.502 5.502 14 Si 0.748 3.252 15 H -0.198 1.198 16 H -0.208 1.208 17 H -0.198 1.198 18 C -0.080 4.080 19 C -0.125 4.125 20 C -0.140 4.140 21 C -0.137 4.137 22 C -0.141 4.141 23 C -0.107 4.107 24 H 0.122 0.878 25 H 0.121 0.879 26 H 0.141 0.859 27 H 0.121 0.879 28 H 0.120 0.880 29 H 0.080 0.920 30 H 0.143 0.857 31 H 0.141 0.859 32 H 0.139 0.861 33 H 0.141 0.859 34 H 0.147 0.853 Dipole moment (debyes) X Y Z Total from point charges 10.444 -10.923 -14.615 21.023 hybrid contribution -1.184 1.344 -1.165 2.137 sum 9.260 -9.579 -15.780 20.652 Atomic orbital electron populations 1.23867 0.95970 1.02567 0.98027 1.23035 0.96559 0.97019 1.02749 1.20265 0.88932 0.83603 0.96987 0.88017 1.86571 1.58051 1.47890 1.34354 1.23334 0.80510 0.83177 0.81051 1.90663 1.53251 1.57052 1.35761 1.23308 0.98991 0.96362 1.08997 1.85423 1.58365 1.44306 0.94917 1.22806 1.30305 1.19735 0.95708 0.90637 1.24998 0.96633 0.97472 0.94364 1.70004 1.42064 1.40470 0.97697 0.86177 0.80447 0.81020 0.77596 1.19827 1.20772 1.19828 1.19537 0.93624 1.00709 0.94131 1.20969 0.92630 0.99919 0.99032 1.21078 0.99731 1.00381 0.92818 1.21190 0.95530 0.99097 0.97905 1.21189 0.94182 1.00264 0.98471 1.21068 1.00542 0.97407 0.91731 0.87845 0.87922 0.85866 0.87909 0.87959 0.92003 0.85739 0.85859 0.86103 0.85894 0.85274 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.16 13.88 29.02 0.40 -1.76 16 2 C -0.18 -2.21 9.49 -36.03 -0.34 -2.55 16 3 C 0.16 2.19 2.71 -29.03 -0.08 2.11 16 4 H 0.10 1.50 7.07 -51.93 -0.37 1.13 16 5 O -0.35 -5.62 7.78 -39.25 -0.31 -5.92 16 6 C 0.48 9.17 7.11 36.01 0.26 9.42 16 7 O -0.48 -10.55 15.08 -18.75 -0.28 -10.84 16 8 C -0.13 -2.62 6.27 36.01 0.23 -2.39 16 9 S -0.06 -1.50 20.58 -107.50 -2.21 -3.71 16 10 C -0.54 -15.05 9.50 30.94 0.29 -14.76 16 11 H 0.08 1.99 7.80 -52.49 -0.41 1.59 16 12 C 0.07 2.10 5.49 -17.43 -0.10 2.01 16 13 N -0.87 -25.74 13.22 55.49 0.73 -25.00 16 14 Si 0.92 21.11 29.55 -169.99 -5.02 16.09 16 15 H -0.27 -6.10 7.11 56.52 0.40 -5.70 16 16 H -0.28 -6.36 7.11 56.52 0.40 -5.96 16 17 H -0.27 -6.11 7.11 56.52 0.40 -5.71 16 18 C -0.08 -0.97 4.99 -104.62 -0.52 -1.49 16 19 C -0.11 -1.13 9.68 -39.59 -0.38 -1.51 16 20 C -0.12 -1.12 10.05 -39.59 -0.40 -1.51 16 21 C -0.12 -1.06 10.05 -39.58 -0.40 -1.46 16 22 C -0.12 -1.20 10.05 -39.58 -0.40 -1.60 16 23 C -0.09 -1.04 9.35 -39.58 -0.37 -1.41 16 24 H 0.10 1.11 8.06 -52.49 -0.42 0.68 16 25 H 0.10 1.47 6.37 -52.48 -0.33 1.14 16 26 H 0.12 1.28 8.06 -52.49 -0.42 0.86 16 27 H 0.10 1.95 8.14 -51.92 -0.42 1.53 16 28 H 0.10 1.91 8.14 -51.92 -0.42 1.49 16 29 H 0.27 7.46 8.31 -40.82 -0.34 7.12 16 30 H 0.12 1.11 8.06 -52.49 -0.42 0.69 16 31 H 0.12 0.83 8.06 -52.49 -0.42 0.41 16 32 H 0.12 0.79 8.06 -52.49 -0.42 0.37 16 33 H 0.12 0.94 8.06 -52.49 -0.42 0.52 16 34 H 0.13 1.49 7.62 -52.49 -0.40 1.09 16 LS Contribution 317.95 15.07 4.79 4.79 Total: -1.00 -32.12 317.95 -8.13 -40.25 By element: Atomic # 1 Polarization: 5.28 SS G_CDS: -4.03 Total: 1.25 kcal Atomic # 6 Polarization: -15.10 SS G_CDS: -1.81 Total: -16.91 kcal Atomic # 7 Polarization: -25.74 SS G_CDS: 0.73 Total: -25.00 kcal Atomic # 8 Polarization: -16.17 SS G_CDS: -0.59 Total: -16.76 kcal Atomic # 14 Polarization: 21.11 SS G_CDS: -5.02 Total: 16.09 kcal Atomic # 16 Polarization: -1.50 SS G_CDS: -2.21 Total: -3.71 kcal Total LS contribution 4.79 Total: 4.79 kcal Total: -32.12 -8.13 -40.25 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001617550974.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 0.005 kcal (2) G-P(sol) polarization free energy of solvation -32.121 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -32.116 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.133 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.254 kcal (6) G-S(sol) free energy of system = (1) + (5) -40.249 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds