Wall clock time and date at job start Tue Mar 31 2020 00:09:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.30998 * 1 3 3 C 1.50698 * 119.99853 * 2 1 4 4 H 1.09004 * 109.47321 * 120.00083 * 3 2 1 5 5 O 1.45204 * 109.47442 * 359.97438 * 3 2 1 6 6 C 1.34226 * 116.99827 * 89.99710 * 5 3 2 7 7 O 1.20823 * 120.00134 * 0.02562 * 6 5 3 8 8 C 1.50701 * 119.99497 * 180.02562 * 6 5 3 9 9 S 1.81004 * 109.46909 * 180.02562 * 8 6 5 10 10 C 1.76201 * 100.00203 * 180.02562 * 9 8 6 11 11 H 1.08002 * 119.99759 * 359.97438 * 10 9 8 12 12 C 1.38794 * 120.00380 * 179.97438 * 10 9 8 13 13 N 1.31629 * 119.99472 * 0.02562 * 12 10 9 14 14 Si 1.86797 * 120.00364 * 179.97438 * 12 10 9 15 15 H 1.48500 * 109.46982 * 60.00099 * 14 12 10 16 16 H 1.48495 * 109.47255 * 180.02562 * 14 12 10 17 17 H 1.48504 * 109.47079 * 300.00300 * 14 12 10 18 18 C 1.50703 * 109.47293 * 239.99432 * 3 2 1 19 19 C 1.38235 * 120.00292 * 265.00268 * 18 3 2 20 20 C 1.38230 * 119.99899 * 179.97438 * 19 18 3 21 21 C 1.38235 * 120.00326 * 359.95697 * 20 19 18 22 22 C 1.38234 * 119.99814 * 359.97438 * 21 20 19 23 23 C 1.38234 * 119.99503 * 84.97561 * 18 3 2 24 24 H 1.08002 * 120.00081 * 179.97438 * 1 2 3 25 25 H 1.08005 * 119.99910 * 0.02562 * 1 2 3 26 26 H 1.07994 * 120.00182 * 179.97438 * 2 1 3 27 27 H 1.09000 * 109.47343 * 299.99668 * 8 6 5 28 28 H 1.08998 * 109.47307 * 60.00191 * 8 6 5 29 29 H 0.97008 * 119.99788 * 179.97438 * 13 12 10 30 30 H 1.08001 * 119.99730 * 359.97438 * 19 18 3 31 31 H 1.08000 * 120.00376 * 179.97438 * 20 19 18 32 32 H 1.08000 * 120.00616 * 179.72578 * 21 20 19 33 33 H 1.08001 * 120.00299 * 179.97438 * 22 21 20 34 34 H 1.07997 * 120.00455 * 0.02562 * 23 18 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0634 1.3051 0.0000 4 1 2.6901 1.3629 0.8900 5 8 1.1199 2.4088 -0.0006 6 6 0.7234 2.8722 1.1951 7 8 1.1510 2.3725 2.2087 8 6 -0.2550 4.0157 1.2733 9 16 -0.5885 4.4068 3.0088 10 6 -1.7274 5.7364 2.8095 11 1 -2.0076 6.0635 1.8191 12 6 -2.2643 6.3635 3.9252 13 7 -1.9222 5.9652 5.1323 14 14 -3.4710 7.7736 3.7139 15 1 -4.6604 7.2988 2.9623 16 1 -3.8935 8.2679 5.0490 17 1 -2.8181 8.8756 2.9625 18 6 2.9300 1.3849 -1.2304 19 6 4.2559 0.9990 -1.1683 20 6 5.0505 1.0718 -2.2970 21 6 4.5190 1.5296 -3.4882 22 6 3.1927 1.9142 -3.5507 23 6 2.3986 1.8436 -2.4213 24 1 -0.5400 -0.9353 -0.0004 25 1 -0.5400 0.9354 -0.0004 26 1 1.8500 -0.9352 0.0004 27 1 0.1680 4.8903 0.7790 28 1 -1.1844 3.7331 0.7790 29 1 -2.2972 6.4037 5.9121 30 1 4.6710 0.6407 -0.2378 31 1 6.0866 0.7707 -2.2484 32 1 5.1410 1.5907 -4.3690 33 1 2.7775 2.2722 -4.4811 34 1 1.3627 2.1450 -2.4699 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001617550974.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:09:01 Heat of formation + Delta-G solvation = -57.000605 kcal Electronic energy + Delta-G solvation = -18205.508976 eV Core-core repulsion = 15194.620017 eV Total energy + Delta-G solvation = -3010.888959 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 278.076 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -41.86215 -40.07933 -37.88015 -34.93958 -34.61944 -32.29362 -31.81357 -31.28821 -27.77302 -27.23912 -23.78028 -22.69791 -22.54038 -20.61853 -19.91389 -18.63379 -18.24240 -17.90974 -16.94193 -16.88306 -16.23503 -15.99128 -15.92448 -15.37889 -14.82353 -14.62168 -14.28963 -14.21493 -13.90865 -13.70134 -13.24903 -13.14493 -12.88079 -12.69532 -12.62407 -12.38084 -11.95399 -11.81921 -11.78066 -11.58926 -11.15200 -10.48478 -10.39988 -9.84501 -9.73352 -8.74853 -8.38051 -6.18193 0.28936 0.48229 0.98655 1.07573 1.22701 1.40719 1.44519 1.53607 1.84538 2.23399 2.83879 2.96988 3.23941 3.53573 3.73376 3.84875 3.93064 4.12497 4.16504 4.21308 4.27605 4.30898 4.40430 4.61180 4.70156 4.87458 4.98765 5.11461 5.19099 5.39955 5.47161 5.52617 5.59404 5.60563 5.70876 6.06786 6.17045 6.64554 7.03481 8.70968 Molecular weight = 278.08amu Principal moments of inertia in cm(-1) A = 0.031026 B = 0.003500 C = 0.003366 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 902.260793 B = 7998.074572 C = 8315.800369 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.179 4.179 2 C -0.176 4.176 3 C 0.153 3.847 4 H 0.090 0.910 5 O -0.341 6.341 6 C 0.488 3.512 7 O -0.514 6.514 8 C -0.109 4.109 9 S -0.133 6.133 10 C -0.551 4.551 11 H 0.086 0.914 12 C 0.017 3.983 13 N -0.910 5.910 14 Si 0.999 3.001 15 H -0.261 1.261 16 H -0.278 1.278 17 H -0.262 1.262 18 C -0.099 4.099 19 C -0.117 4.117 20 C -0.122 4.122 21 C -0.117 4.117 22 C -0.127 4.127 23 C -0.108 4.108 24 H 0.126 0.874 25 H 0.083 0.917 26 H 0.148 0.852 27 H 0.120 0.880 28 H 0.121 0.879 29 H 0.273 0.727 30 H 0.135 0.865 31 H 0.150 0.850 32 H 0.150 0.850 33 H 0.143 0.857 34 H 0.121 0.879 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.387 -10.198 -18.417 23.475 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.215 4.215 2 C -0.194 4.194 3 C 0.098 3.902 4 H 0.108 0.892 5 O -0.258 6.258 6 C 0.331 3.669 7 O -0.402 6.402 8 C -0.257 4.257 9 S 0.094 5.906 10 C -0.699 4.699 11 H 0.104 0.896 12 C -0.188 4.188 13 N -0.546 5.546 14 Si 0.821 3.179 15 H -0.186 1.186 16 H -0.203 1.203 17 H -0.186 1.186 18 C -0.099 4.099 19 C -0.135 4.135 20 C -0.140 4.140 21 C -0.135 4.135 22 C -0.145 4.145 23 C -0.126 4.126 24 H 0.144 0.856 25 H 0.102 0.898 26 H 0.166 0.834 27 H 0.138 0.862 28 H 0.139 0.861 29 H 0.082 0.918 30 H 0.152 0.848 31 H 0.168 0.832 32 H 0.168 0.832 33 H 0.161 0.839 34 H 0.139 0.861 Dipole moment (debyes) X Y Z Total from point charges 10.934 -10.835 -16.993 22.928 hybrid contribution -1.208 1.219 -0.566 1.807 sum 9.726 -9.616 -17.559 22.257 Atomic orbital electron populations 1.23972 0.96217 1.02802 0.98555 1.23239 0.96628 0.97305 1.02243 1.20519 0.88633 0.83307 0.97732 0.89214 1.86541 1.58349 1.48674 1.32239 1.22997 0.79897 0.82621 0.81428 1.90653 1.54435 1.58082 1.37021 1.23098 1.00514 0.97702 1.04410 1.85523 1.58929 1.44976 1.01185 1.23171 1.30391 1.19859 0.96432 0.89622 1.26112 0.98521 1.00351 0.93822 1.70158 1.43581 1.42125 0.98717 0.84989 0.77862 0.77228 0.77852 1.18595 1.20306 1.18650 1.19491 0.94228 1.02742 0.93442 1.21181 0.92079 0.99944 1.00259 1.21440 1.00825 0.99432 0.92279 1.21589 0.95404 0.97617 0.98873 1.21464 0.94589 0.99861 0.98571 1.21130 1.00642 0.98386 0.92423 0.85603 0.89825 0.83407 0.86217 0.86053 0.91808 0.84754 0.83216 0.83237 0.83911 0.86096 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -4.54 13.88 67.78 0.94 -3.60 16 2 C -0.18 -4.35 9.49 25.65 0.24 -4.10 16 3 C 0.15 4.25 2.71 29.10 0.08 4.32 16 4 H 0.09 2.71 7.07 -2.38 -0.02 2.69 16 5 O -0.34 -10.98 7.78 -51.38 -0.40 -11.38 16 6 C 0.49 18.97 7.11 71.24 0.51 19.48 16 7 O -0.51 -23.15 15.08 21.97 0.33 -22.82 16 8 C -0.11 -4.44 6.27 71.24 0.45 -3.99 16 9 S -0.13 -7.26 20.58 -56.49 -1.16 -8.42 16 10 C -0.55 -31.02 9.50 67.95 0.65 -30.38 16 11 H 0.09 4.47 7.80 -2.91 -0.02 4.45 16 12 C 0.02 0.96 5.49 84.86 0.47 1.43 16 13 N -0.91 -54.96 13.22 21.65 0.29 -54.67 16 14 Si 1.00 42.96 29.55 68.60 2.03 44.98 16 15 H -0.26 -10.67 7.11 99.48 0.71 -9.96 16 16 H -0.28 -11.63 7.11 99.48 0.71 -10.93 16 17 H -0.26 -10.71 7.11 99.48 0.71 -10.00 16 18 C -0.10 -2.34 4.99 -19.87 -0.10 -2.44 16 19 C -0.12 -2.27 9.68 22.27 0.22 -2.06 16 20 C -0.12 -1.89 10.05 22.27 0.22 -1.67 16 21 C -0.12 -1.73 10.05 22.27 0.22 -1.50 16 22 C -0.13 -2.21 10.05 22.27 0.22 -1.99 16 23 C -0.11 -2.40 9.35 22.27 0.21 -2.19 16 24 H 0.13 2.55 8.06 -2.91 -0.02 2.53 16 25 H 0.08 2.43 6.37 -2.91 -0.02 2.41 16 26 H 0.15 2.86 8.06 -2.91 -0.02 2.84 16 27 H 0.12 4.48 8.14 -2.40 -0.02 4.46 16 28 H 0.12 4.48 8.14 -2.40 -0.02 4.46 16 29 H 0.27 15.32 8.31 -92.70 -0.77 14.55 16 30 H 0.13 2.24 8.06 -2.91 -0.02 2.21 16 31 H 0.15 1.49 8.06 -2.91 -0.02 1.46 16 32 H 0.15 1.33 8.06 -2.91 -0.02 1.31 16 33 H 0.14 1.82 8.06 -2.91 -0.02 1.80 16 34 H 0.12 2.78 7.62 -2.91 -0.02 2.76 16 Total: -1.00 -70.45 317.95 6.50 -63.95 By element: Atomic # 1 Polarization: 15.94 SS G_CDS: 1.09 Total: 17.03 kcal Atomic # 6 Polarization: -33.01 SS G_CDS: 4.32 Total: -28.69 kcal Atomic # 7 Polarization: -54.96 SS G_CDS: 0.29 Total: -54.67 kcal Atomic # 8 Polarization: -34.12 SS G_CDS: -0.07 Total: -34.19 kcal Atomic # 14 Polarization: 42.96 SS G_CDS: 2.03 Total: 44.98 kcal Atomic # 16 Polarization: -7.26 SS G_CDS: -1.16 Total: -8.42 kcal Total: -70.45 6.50 -63.95 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001617550974.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 6.951 kcal (2) G-P(sol) polarization free energy of solvation -70.449 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -63.498 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.497 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.952 kcal (6) G-S(sol) free energy of system = (1) + (5) -57.001 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds