Wall clock time and date at job start Mon Mar 30 2020 23:50:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42905 * 1 3 3 C 1.36030 * 116.99652 * 2 1 4 4 C 1.35411 * 120.46319 * 0.02562 * 3 2 1 5 5 O 1.33905 * 121.02321 * 180.02562 * 4 3 2 6 6 C 1.34364 * 122.00475 * 359.97438 * 5 4 3 7 7 C 1.47694 * 119.59508 * 179.97438 * 6 5 4 8 8 O 1.21615 * 120.00043 * 173.53293 * 7 6 5 9 9 N 1.34772 * 120.00004 * 353.53690 * 7 6 5 10 10 C 1.36444 * 120.00196 * 183.26303 * 9 7 6 11 11 H 1.08007 * 119.99968 * 329.91773 * 10 9 7 12 12 C 1.39338 * 120.00397 * 149.91488 * 10 9 7 13 13 N 1.31174 * 119.99550 * 332.56839 * 12 10 9 14 14 Si 1.86799 * 120.00447 * 152.57010 * 12 10 9 15 15 H 1.48492 * 109.47228 * 94.99641 * 14 12 10 16 16 H 1.48498 * 109.47189 * 215.00039 * 14 12 10 17 17 H 1.48503 * 109.46731 * 334.99372 * 14 12 10 18 18 C 1.46503 * 120.00171 * 3.26576 * 9 7 6 19 19 C 1.47206 * 109.47310 * 82.68171 * 18 9 7 20 20 N 6.22133 * 82.73505 * 20.96489 * 2 1 3 21 21 C 1.36070 * 120.80935 * 0.25379 * 6 5 4 22 22 C 1.41976 * 118.89471 * 359.51301 * 21 6 5 23 23 O 1.22149 * 120.90525 * 180.23579 * 22 21 6 24 24 H 1.08999 * 109.46982 * 299.99568 * 1 2 3 25 25 H 1.08999 * 109.47075 * 59.99852 * 1 2 3 26 26 H 1.08998 * 109.46957 * 180.02562 * 1 2 3 27 27 H 1.07999 * 119.48777 * 0.04160 * 4 3 2 28 28 H 0.97003 * 120.00305 * 180.02562 * 13 12 10 29 29 H 1.08998 * 109.47297 * 202.68101 * 18 9 7 30 30 H 1.08999 * 109.47224 * 322.68296 * 18 9 7 31 31 H 1.08002 * 120.55620 * 179.71910 * 21 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4291 0.0000 0.0000 3 6 2.0465 1.2121 0.0000 4 6 1.3182 2.3536 0.0005 5 8 1.9143 3.5526 0.0000 6 6 3.2516 3.6830 -0.0005 7 6 3.8530 5.0320 -0.0016 8 8 5.0564 5.1613 0.1165 9 7 3.0681 6.1196 -0.1335 10 6 3.6289 7.3615 -0.2015 11 1 4.5609 7.5618 0.3064 12 6 2.9995 8.3716 -0.9261 13 7 2.2258 8.0664 -1.9405 14 14 3.2573 10.1602 -0.4531 15 1 4.3498 10.7375 -1.2765 16 1 2.0040 10.9206 -0.6902 17 1 3.6228 10.2444 0.9838 18 6 1.6125 5.9684 -0.2038 19 6 1.0649 5.8525 1.1577 20 7 0.6423 5.7628 2.2081 21 6 4.0587 2.5875 -0.0057 22 6 3.4648 1.2979 -0.0001 23 8 4.1544 0.2896 -0.0002 24 1 -0.3633 0.5138 0.8900 25 1 -0.3633 0.5139 -0.8900 26 1 -0.3633 -1.0277 0.0005 27 1 0.2397 2.2961 0.0016 28 1 1.7879 8.7695 -2.4453 29 1 1.1801 6.8392 -0.6964 30 1 1.3675 5.0707 -0.7715 31 1 5.1331 2.6970 -0.0107 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001627702153.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 23:50:55 Heat of formation + Delta-G solvation = -40.737775 kcal Electronic energy + Delta-G solvation = -21443.412405 eV Core-core repulsion = 17886.935441 eV Total energy + Delta-G solvation = -3556.476964 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 278.078 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -41.89888 -39.43892 -38.57427 -37.88917 -36.35503 -35.02280 -32.45497 -32.13766 -31.06084 -27.98520 -27.82861 -26.10141 -23.90758 -23.68507 -20.65959 -18.82044 -18.61732 -18.44846 -17.23419 -16.83394 -16.21791 -15.72114 -15.61456 -15.28267 -15.06075 -14.64207 -14.43942 -14.13797 -13.75454 -13.71972 -13.42872 -13.22122 -12.48911 -12.41672 -12.30721 -11.79857 -11.60169 -11.59121 -11.37024 -10.95155 -10.77760 -10.61760 -9.69209 -9.55086 -9.35470 -9.21599 -8.30866 -8.11996 -6.98048 -4.42428 0.77233 1.14490 2.41087 2.87362 2.97521 3.04243 3.06312 3.12706 3.27892 3.30729 3.74540 3.85931 4.23826 4.33283 4.35166 4.55040 4.87528 4.93359 4.94257 4.99360 5.28232 5.39145 5.50089 5.74853 5.93243 6.26898 6.39881 6.99048 7.06101 7.12700 7.54445 7.86898 7.90060 8.00936 8.52851 8.68752 9.26385 10.05608 Molecular weight = 278.08amu Principal moments of inertia in cm(-1) A = 0.026901 B = 0.005452 C = 0.004912 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1040.608959 B = 5134.147551 C = 5699.438985 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.015 3.985 2 O -0.287 6.287 3 C -0.056 4.056 4 C -0.018 4.018 5 O -0.192 6.192 6 C 0.117 3.883 7 C 0.484 3.516 8 O -0.537 6.537 9 N -0.397 5.397 10 C -0.313 4.313 11 H 0.114 0.886 12 C 0.044 3.956 13 N -0.837 5.837 14 Si 0.925 3.075 15 H -0.270 1.270 16 H -0.276 1.276 17 H -0.262 1.262 18 C 0.177 3.823 19 C 0.210 3.790 20 N -0.453 5.453 21 C -0.265 4.265 22 C 0.411 3.589 23 O -0.480 6.480 24 H 0.056 0.944 25 H 0.057 0.943 26 H 0.104 0.896 27 H 0.194 0.806 28 H 0.283 0.717 29 H 0.156 0.844 30 H 0.123 0.877 31 H 0.173 0.827 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.258 -5.140 -1.039 9.782 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.080 4.080 2 O -0.200 6.200 3 C -0.103 4.103 4 C -0.084 4.084 5 O -0.095 6.095 6 C 0.066 3.934 7 C 0.273 3.727 8 O -0.420 6.420 9 N -0.114 5.114 10 C -0.440 4.440 11 H 0.131 0.869 12 C -0.165 4.165 13 N -0.472 5.472 14 Si 0.749 3.251 15 H -0.195 1.195 16 H -0.201 1.201 17 H -0.186 1.186 18 C 0.050 3.950 19 C -0.108 4.108 20 N -0.132 5.132 21 C -0.288 4.288 22 C 0.300 3.700 23 O -0.365 6.365 24 H 0.074 0.926 25 H 0.076 0.924 26 H 0.122 0.878 27 H 0.211 0.789 28 H 0.093 0.907 29 H 0.173 0.827 30 H 0.139 0.861 31 H 0.190 0.810 Dipole moment (debyes) X Y Z Total from point charges -8.119 -5.574 0.419 9.857 hybrid contribution -0.297 0.755 -0.346 0.882 sum -8.415 -4.820 0.072 9.698 Atomic orbital electron populations 1.23171 0.79024 1.04574 1.01261 1.86262 1.20481 1.24212 1.89050 1.21084 0.95539 0.85634 1.08018 1.23970 0.98339 0.82426 1.03649 1.83599 1.21156 1.29140 1.75577 1.23358 0.79235 0.97662 0.93188 1.17484 0.86599 0.80966 0.87656 1.90753 1.12688 1.83121 1.55439 1.43355 1.03135 1.05908 1.58965 1.19786 1.10145 0.83467 1.30636 0.86871 1.25558 0.96317 1.01707 0.92923 1.69800 1.28520 1.35871 1.12999 0.85925 0.78605 0.80425 0.80159 1.19511 1.20054 1.18633 1.19659 0.82952 1.07413 0.84947 1.30168 0.93274 0.91649 0.95725 1.81036 1.09578 1.10854 1.11738 1.22840 1.03343 0.90446 1.12134 1.17068 0.85893 0.90003 0.77014 1.90791 1.65231 1.38160 1.42346 0.92582 0.92430 0.87788 0.78905 0.90677 0.82720 0.86054 0.80988 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.01 0.13 9.82 101.05 0.99 1.12 16 2 O -0.29 -4.15 10.35 -35.07 -0.36 -4.51 16 3 C -0.06 -0.87 6.72 -39.12 -0.26 -1.13 16 4 C -0.02 -0.24 10.43 29.72 0.31 0.07 16 5 O -0.19 -2.99 4.63 6.60 0.03 -2.96 16 6 C 0.12 2.18 6.71 -36.50 -0.25 1.93 16 7 C 0.48 10.64 7.50 -12.40 -0.09 10.54 16 8 O -0.54 -13.39 16.04 5.26 0.08 -13.31 16 9 N -0.40 -8.60 2.54 -119.09 -0.30 -8.90 16 10 C -0.31 -7.31 9.03 -15.09 -0.14 -7.45 16 11 H 0.11 2.78 7.63 -52.48 -0.40 2.38 16 12 C 0.04 0.96 4.80 -17.42 -0.08 0.87 16 13 N -0.84 -18.00 11.43 55.52 0.63 -17.37 16 14 Si 0.92 17.27 29.63 -169.99 -5.04 12.24 16 15 H -0.27 -5.09 7.11 56.52 0.40 -4.69 16 16 H -0.28 -5.00 7.11 56.52 0.40 -4.60 16 17 H -0.26 -5.02 7.11 56.52 0.40 -4.62 16 18 C 0.18 3.17 5.07 -6.82 -0.03 3.14 16 19 C 0.21 3.84 14.36 -20.76 -0.30 3.55 16 20 N -0.45 -8.81 18.54 42.15 0.78 -8.03 16 21 C -0.27 -4.94 9.55 -38.93 -0.37 -5.31 16 22 C 0.41 7.70 6.81 -36.68 -0.25 7.45 16 23 O -0.48 -10.33 17.74 -10.45 -0.19 -10.51 16 24 H 0.06 0.41 7.66 -51.93 -0.40 0.01 16 25 H 0.06 0.39 7.67 -51.93 -0.40 -0.01 16 26 H 0.10 0.68 8.14 -51.93 -0.42 0.26 16 27 H 0.19 1.70 6.21 -52.49 -0.33 1.38 16 28 H 0.28 5.62 8.30 -40.82 -0.34 5.28 16 29 H 0.16 2.87 5.30 -51.93 -0.28 2.60 16 30 H 0.12 1.88 5.30 -52.05 -0.28 1.61 16 31 H 0.17 3.28 7.58 -52.49 -0.40 2.88 16 LS Contribution 286.81 15.07 4.32 4.32 Total: -1.00 -29.22 286.81 -2.54 -31.75 By element: Atomic # 1 Polarization: 4.51 SS G_CDS: -2.03 Total: 2.48 kcal Atomic # 6 Polarization: 15.26 SS G_CDS: -0.47 Total: 14.78 kcal Atomic # 7 Polarization: -35.41 SS G_CDS: 1.11 Total: -34.29 kcal Atomic # 8 Polarization: -30.85 SS G_CDS: -0.43 Total: -31.29 kcal Atomic # 14 Polarization: 17.27 SS G_CDS: -5.04 Total: 12.24 kcal Total LS contribution 4.32 Total: 4.32 kcal Total: -29.22 -2.54 -31.75 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001627702153.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -8.983 kcal (2) G-P(sol) polarization free energy of solvation -29.217 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -38.201 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.537 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -31.754 kcal (6) G-S(sol) free energy of system = (1) + (5) -40.738 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds