Wall clock time and date at job start Mon Mar 30 2020 23:50:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42905 * 1 3 3 C 1.36030 * 116.99652 * 2 1 4 4 C 1.35411 * 120.46319 * 0.02562 * 3 2 1 5 5 O 1.33905 * 121.02321 * 180.02562 * 4 3 2 6 6 C 1.34364 * 122.00475 * 359.97438 * 5 4 3 7 7 C 1.47694 * 119.59508 * 179.97438 * 6 5 4 8 8 O 1.21615 * 120.00043 * 173.53293 * 7 6 5 9 9 N 1.34772 * 120.00004 * 353.53690 * 7 6 5 10 10 C 1.36444 * 120.00196 * 183.26303 * 9 7 6 11 11 H 1.08007 * 119.99968 * 329.91773 * 10 9 7 12 12 C 1.39338 * 120.00397 * 149.91488 * 10 9 7 13 13 N 1.31174 * 119.99550 * 332.56839 * 12 10 9 14 14 Si 1.86799 * 120.00447 * 152.57010 * 12 10 9 15 15 H 1.48492 * 109.47228 * 94.99641 * 14 12 10 16 16 H 1.48498 * 109.47189 * 215.00039 * 14 12 10 17 17 H 1.48503 * 109.46731 * 334.99372 * 14 12 10 18 18 C 1.46503 * 120.00171 * 3.26576 * 9 7 6 19 19 C 1.47206 * 109.47310 * 82.68171 * 18 9 7 20 20 N 6.22133 * 82.73505 * 20.96489 * 2 1 3 21 21 C 1.36070 * 120.80935 * 0.25379 * 6 5 4 22 22 C 1.41976 * 118.89471 * 359.51301 * 21 6 5 23 23 O 1.22149 * 120.90525 * 180.23579 * 22 21 6 24 24 H 1.08999 * 109.46982 * 299.99568 * 1 2 3 25 25 H 1.08999 * 109.47075 * 59.99852 * 1 2 3 26 26 H 1.08998 * 109.46957 * 180.02562 * 1 2 3 27 27 H 1.07999 * 119.48777 * 0.04160 * 4 3 2 28 28 H 0.97003 * 120.00305 * 180.02562 * 13 12 10 29 29 H 1.08998 * 109.47297 * 202.68101 * 18 9 7 30 30 H 1.08999 * 109.47224 * 322.68296 * 18 9 7 31 31 H 1.08002 * 120.55620 * 179.71910 * 21 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4291 0.0000 0.0000 3 6 2.0465 1.2121 0.0000 4 6 1.3182 2.3536 0.0005 5 8 1.9143 3.5526 0.0000 6 6 3.2516 3.6830 -0.0005 7 6 3.8530 5.0320 -0.0016 8 8 5.0564 5.1613 0.1165 9 7 3.0681 6.1196 -0.1335 10 6 3.6289 7.3615 -0.2015 11 1 4.5609 7.5618 0.3064 12 6 2.9995 8.3716 -0.9261 13 7 2.2258 8.0664 -1.9405 14 14 3.2573 10.1602 -0.4531 15 1 4.3498 10.7375 -1.2765 16 1 2.0040 10.9206 -0.6902 17 1 3.6228 10.2444 0.9838 18 6 1.6125 5.9684 -0.2038 19 6 1.0649 5.8525 1.1577 20 7 0.6423 5.7628 2.2081 21 6 4.0587 2.5875 -0.0057 22 6 3.4648 1.2979 -0.0001 23 8 4.1544 0.2896 -0.0002 24 1 -0.3633 0.5138 0.8900 25 1 -0.3633 0.5139 -0.8900 26 1 -0.3633 -1.0277 0.0005 27 1 0.2397 2.2961 0.0016 28 1 1.7879 8.7695 -2.4453 29 1 1.1801 6.8392 -0.6964 30 1 1.3675 5.0707 -0.7715 31 1 5.1331 2.6970 -0.0107 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001627702153.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 23:50:53 Heat of formation + Delta-G solvation = -59.496197 kcal Electronic energy + Delta-G solvation = -21444.225832 eV Core-core repulsion = 17886.935441 eV Total energy + Delta-G solvation = -3557.290390 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 278.078 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -43.26763 -40.85148 -40.01878 -39.19317 -37.95966 -36.64526 -34.11851 -33.64451 -32.34601 -29.47206 -28.69522 -27.69456 -25.43341 -24.91553 -22.23472 -20.11350 -19.97630 -19.95826 -18.69283 -18.24376 -17.56044 -17.28593 -16.96977 -16.60037 -16.34769 -15.97419 -15.81424 -15.45305 -15.29215 -15.16099 -14.98010 -14.73258 -13.98428 -13.88836 -13.69215 -13.31305 -13.07955 -12.63437 -12.47185 -12.42885 -12.22947 -12.08751 -11.22864 -11.17958 -10.88986 -10.76684 -9.97938 -9.38037 -8.64843 -6.18549 -0.71503 -0.10901 1.04309 1.35783 1.44627 1.53632 1.63751 1.76601 1.80898 2.03820 2.24182 2.34394 2.67080 2.73867 3.26361 3.29107 3.34379 3.49985 3.97979 4.23312 4.33035 4.36260 4.40253 4.52356 4.75867 4.82893 4.95732 5.35679 5.67206 5.92070 6.00750 6.19040 6.52572 6.53153 6.81963 6.98524 7.56598 8.39832 Molecular weight = 278.08amu Principal moments of inertia in cm(-1) A = 0.026901 B = 0.005452 C = 0.004912 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1040.608959 B = 5134.147551 C = 5699.438985 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.000 4.000 2 O -0.311 6.311 3 C -0.066 4.066 4 C 0.012 3.988 5 O -0.184 6.184 6 C 0.128 3.872 7 C 0.472 3.528 8 O -0.581 6.581 9 N -0.401 5.401 10 C -0.352 4.352 11 H 0.088 0.912 12 C 0.028 3.972 13 N -0.843 5.843 14 Si 0.978 3.022 15 H -0.271 1.271 16 H -0.259 1.259 17 H -0.273 1.273 18 C 0.182 3.818 19 C 0.224 3.776 20 N -0.468 5.468 21 C -0.267 4.267 22 C 0.403 3.597 23 O -0.523 6.523 24 H 0.074 0.926 25 H 0.081 0.919 26 H 0.123 0.877 27 H 0.250 0.750 28 H 0.293 0.707 29 H 0.155 0.845 30 H 0.151 0.849 31 H 0.158 0.842 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.330 -4.814 -1.488 12.400 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.093 4.093 2 O -0.226 6.226 3 C -0.114 4.114 4 C -0.053 4.053 5 O -0.086 6.086 6 C 0.076 3.924 7 C 0.262 3.738 8 O -0.467 6.467 9 N -0.116 5.116 10 C -0.478 4.478 11 H 0.105 0.895 12 C -0.181 4.181 13 N -0.477 5.477 14 Si 0.800 3.200 15 H -0.197 1.197 16 H -0.183 1.183 17 H -0.198 1.198 18 C 0.057 3.943 19 C -0.094 4.094 20 N -0.147 5.147 21 C -0.290 4.290 22 C 0.295 3.705 23 O -0.412 6.412 24 H 0.092 0.908 25 H 0.100 0.900 26 H 0.141 0.859 27 H 0.266 0.734 28 H 0.104 0.896 29 H 0.172 0.828 30 H 0.168 0.832 31 H 0.175 0.825 Dipole moment (debyes) X Y Z Total from point charges -11.257 -5.238 -0.046 12.416 hybrid contribution 0.551 0.615 -0.236 0.859 sum -10.706 -4.623 -0.282 11.665 Atomic orbital electron populations 1.23621 0.75769 1.06717 1.03204 1.86241 1.23758 1.23471 1.89108 1.20670 0.94091 0.87199 1.09391 1.24794 0.99927 0.80363 1.00248 1.83548 1.19417 1.30847 1.74790 1.22601 0.80448 0.95733 0.93637 1.17831 0.86384 0.82136 0.87450 1.90711 1.14589 1.84203 1.57225 1.43494 1.04586 1.05366 1.58187 1.19689 1.10653 0.84927 1.32580 0.89470 1.26076 0.95713 1.04000 0.92354 1.69782 1.28071 1.37261 1.12631 0.85150 0.78997 0.76788 0.79017 1.19655 1.18274 1.19770 1.19813 0.80713 1.08768 0.85045 1.30076 0.92784 0.91098 0.95468 1.81059 1.10163 1.11532 1.11966 1.22787 1.02985 0.91057 1.12164 1.17357 0.87774 0.89131 0.76208 1.90766 1.66482 1.39047 1.44929 0.90775 0.90025 0.85928 0.73448 0.89567 0.82782 0.83222 0.82468 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.00 0.01 9.82 113.37 1.11 1.12 16 2 O -0.31 -8.25 10.35 -79.33 -0.82 -9.07 16 3 C -0.07 -1.93 6.72 22.57 0.15 -1.77 16 4 C 0.01 0.26 10.43 67.17 0.70 0.96 16 5 O -0.18 -5.22 4.63 0.71 0.00 -5.22 16 6 C 0.13 4.69 6.71 24.27 0.16 4.86 16 7 C 0.47 21.10 7.50 86.74 0.65 21.76 16 8 O -0.58 -30.33 16.04 -4.08 -0.07 -30.40 16 9 N -0.40 -17.32 2.54 -648.94 -1.65 -18.97 16 10 C -0.35 -16.62 9.03 84.24 0.76 -15.86 16 11 H 0.09 4.50 7.63 -2.91 -0.02 4.47 16 12 C 0.03 1.19 4.80 85.06 0.41 1.59 16 13 N -0.84 -34.83 11.43 21.73 0.25 -34.58 16 14 Si 0.98 34.55 29.63 68.60 2.03 36.59 16 15 H -0.27 -9.63 7.11 99.48 0.71 -8.92 16 16 H -0.26 -8.42 7.11 99.48 0.71 -7.71 16 17 H -0.27 -10.08 7.11 99.48 0.71 -9.38 16 18 C 0.18 6.18 5.07 84.57 0.43 6.61 16 19 C 0.22 7.69 14.36 89.45 1.28 8.98 16 20 N -0.47 -17.16 18.54 20.00 0.37 -16.79 16 21 C -0.27 -10.18 9.55 22.69 0.22 -9.96 16 22 C 0.40 15.15 6.81 24.15 0.16 15.31 16 23 O -0.52 -23.19 17.74 8.76 0.16 -23.04 16 24 H 0.07 0.71 7.66 -2.39 -0.02 0.69 16 25 H 0.08 0.68 7.67 -2.39 -0.02 0.66 16 26 H 0.12 1.13 8.14 -2.39 -0.02 1.12 16 27 H 0.25 2.75 6.21 -2.91 -0.02 2.73 16 28 H 0.29 10.97 8.30 -92.71 -0.77 10.20 16 29 H 0.16 5.38 5.30 -2.39 -0.01 5.37 16 30 H 0.15 4.17 5.30 -4.23 -0.02 4.14 16 31 H 0.16 6.39 7.58 -2.91 -0.02 6.37 16 Total: -1.00 -65.66 286.81 7.52 -58.14 By element: Atomic # 1 Polarization: 8.54 SS G_CDS: 1.20 Total: 9.74 kcal Atomic # 6 Polarization: 27.55 SS G_CDS: 6.04 Total: 33.59 kcal Atomic # 7 Polarization: -69.31 SS G_CDS: -1.03 Total: -70.34 kcal Atomic # 8 Polarization: -66.99 SS G_CDS: -0.73 Total: -67.72 kcal Atomic # 14 Polarization: 34.55 SS G_CDS: 2.03 Total: 36.59 kcal Total: -65.66 7.52 -58.14 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001627702153.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -1.354 kcal (2) G-P(sol) polarization free energy of solvation -65.657 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -67.011 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 7.515 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.142 kcal (6) G-S(sol) free energy of system = (1) + (5) -59.496 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds