Wall clock time and date at job start Tue Mar 31 2020 00:00:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13594 * 1 3 3 C 1.43204 * 179.97438 * 2 1 4 4 C 1.38280 * 120.73180 * 269.27904 * 3 2 1 5 5 N 1.35093 * 119.00604 * 179.97438 * 4 3 2 6 6 C 1.46500 * 119.71153 * 180.02562 * 5 4 3 7 7 C 1.52997 * 109.47473 * 89.99786 * 6 5 4 8 8 N 1.46505 * 109.47212 * 179.97438 * 7 6 5 9 9 C 1.34771 * 119.99622 * 179.97438 * 8 7 6 10 10 O 1.21685 * 120.00526 * 0.02562 * 9 8 7 11 11 C 1.46381 * 119.99614 * 180.02562 * 9 8 7 12 12 H 1.07993 * 120.00106 * 0.02562 * 11 9 8 13 13 C 1.40051 * 119.99693 * 180.02562 * 11 9 8 14 14 N 1.30666 * 120.00364 * 359.97438 * 13 11 9 15 15 Si 1.86805 * 119.99754 * 180.02562 * 13 11 9 16 16 H 1.48505 * 109.46882 * 0.02562 * 15 13 11 17 17 H 1.48495 * 109.47005 * 119.99582 * 15 13 11 18 18 H 1.48493 * 109.47394 * 240.00062 * 15 13 11 19 19 C 1.34457 * 120.57243 * 0.27056 * 5 4 3 20 20 O 1.21917 * 119.19964 * 179.70433 * 19 5 4 21 21 N 1.33305 * 121.59194 * 359.44252 * 19 5 4 22 22 C 1.32225 * 120.94691 * 0.56009 * 21 19 5 23 23 O 1.35038 * 120.32348 * 179.70194 * 22 21 19 24 24 H 1.08001 * 120.49742 * 359.95851 * 4 3 2 25 25 H 1.09002 * 109.47129 * 329.99529 * 6 5 4 26 26 H 1.08998 * 109.46845 * 210.00336 * 6 5 4 27 27 H 1.09002 * 109.47153 * 59.99757 * 7 6 5 28 28 H 1.09001 * 109.46832 * 299.99948 * 7 6 5 29 29 H 0.96996 * 119.99606 * 0.02562 * 8 7 6 30 30 H 0.97002 * 120.00059 * 179.97438 * 14 13 11 31 31 H 0.96696 * 113.99834 * 0.02562 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1359 0.0000 0.0000 3 6 2.5680 0.0006 0.0000 4 6 3.2746 0.0159 1.1885 5 7 4.6249 0.0155 1.1478 6 6 5.3890 0.0310 2.3977 7 6 5.6551 -1.4060 2.8507 8 7 6.4197 -1.3904 4.1003 9 6 6.7708 -2.5504 4.6899 10 8 6.4532 -3.6106 4.1841 11 6 7.5343 -2.5348 5.9387 12 1 7.8159 -1.5939 6.3878 13 6 7.8997 -3.7402 6.5511 14 7 7.5586 -4.8786 6.0080 15 14 8.8734 -3.7204 8.1451 16 1 9.1305 -2.3151 8.5507 17 1 8.0969 -4.4075 9.2081 18 1 10.1663 -4.4225 7.9442 19 6 5.2736 0.0059 -0.0298 20 8 6.4928 0.0112 -0.0374 21 7 4.6160 -0.0145 -1.1892 22 6 3.2942 -0.0150 -1.2212 23 8 2.6408 -0.0297 -2.4030 24 1 2.7548 0.0283 2.1351 25 1 4.8192 0.5544 3.1655 26 1 6.3378 0.5430 2.2372 27 1 6.2249 -1.9294 2.0830 28 1 4.7062 -1.9178 3.0113 29 1 6.6726 -0.5453 4.5036 30 1 7.8120 -5.7135 6.4320 31 1 3.2236 -0.0396 -3.1745 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001630030712.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:00:00 Heat of formation + Delta-G solvation = -33.168406 kcal Electronic energy + Delta-G solvation = -20203.205146 eV Core-core repulsion = 16679.349165 eV Total energy + Delta-G solvation = -3523.855981 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 278.085 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -42.28797 -39.32365 -37.60618 -37.36911 -36.57818 -35.39771 -33.41864 -32.42297 -31.84178 -29.10158 -26.39350 -25.54414 -24.48812 -22.85524 -20.27376 -20.03674 -19.66304 -18.73145 -17.49368 -16.94118 -16.38794 -15.83387 -15.34914 -15.03733 -14.87422 -14.62514 -14.33210 -14.26297 -13.93472 -13.88484 -13.40325 -13.02519 -12.87710 -12.47013 -12.32308 -11.55282 -11.33571 -11.20776 -11.15508 -10.91294 -10.59816 -10.52433 -10.29318 -10.25235 -8.98734 -8.94309 -7.76667 -7.74705 -6.28168 -4.74327 0.09173 0.80757 1.78462 2.33768 2.73004 2.82044 3.08445 3.16885 3.20973 3.42384 3.44514 3.68773 3.96982 4.07192 4.48209 4.57141 4.59142 4.67641 4.82491 4.95607 5.23661 5.46805 5.63424 5.78147 6.13614 6.25023 6.59041 7.19507 7.34933 7.35352 7.73091 7.76099 7.87611 8.20029 8.93374 9.35168 10.48378 10.66297 Molecular weight = 278.08amu Principal moments of inertia in cm(-1) A = 0.031840 B = 0.003354 C = 0.003206 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 879.195789 B = 8346.378494 C = 8730.975678 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.409 5.409 2 C 0.279 3.721 3 C -0.202 4.202 4 C 0.279 3.721 5 N -0.504 5.504 6 C 0.077 3.923 7 C 0.120 3.880 8 N -0.764 5.764 9 C 0.554 3.446 10 O -0.578 6.578 11 C -0.543 4.543 12 H 0.070 0.930 13 C 0.086 3.914 14 N -0.766 5.766 15 Si 0.910 3.090 16 H -0.263 1.263 17 H -0.276 1.276 18 H -0.276 1.276 19 C 0.653 3.347 20 O -0.503 6.503 21 N -0.603 5.603 22 C 0.489 3.511 23 O -0.441 6.441 24 H 0.198 0.802 25 H 0.105 0.895 26 H 0.116 0.884 27 H 0.060 0.940 28 H 0.055 0.945 29 H 0.383 0.617 30 H 0.269 0.731 31 H 0.423 0.577 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.593 12.679 -8.995 17.763 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.086 5.086 2 C -0.038 4.038 3 C -0.216 4.216 4 C 0.133 3.867 5 N -0.215 5.215 6 C -0.045 4.045 7 C -0.006 4.006 8 N -0.422 5.422 9 C 0.359 3.641 10 O -0.460 6.460 11 C -0.580 4.580 12 H 0.088 0.912 13 C -0.134 4.134 14 N -0.394 5.394 15 Si 0.734 3.266 16 H -0.187 1.187 17 H -0.201 1.201 18 H -0.201 1.201 19 C 0.355 3.645 20 O -0.374 6.374 21 N -0.360 5.360 22 C 0.285 3.715 23 O -0.236 6.236 24 H 0.215 0.785 25 H 0.124 0.876 26 H 0.134 0.866 27 H 0.079 0.921 28 H 0.073 0.927 29 H 0.214 0.786 30 H 0.080 0.920 31 H 0.281 0.719 Dipole moment (debyes) X Y Z Total from point charges -9.531 11.665 -9.728 17.932 hybrid contribution 0.936 0.348 1.049 1.448 sum -8.595 12.013 -8.679 17.132 Atomic orbital electron populations 1.81293 1.11338 1.10158 1.05797 1.24401 0.91085 0.93454 0.94847 1.15181 0.86682 1.28827 0.90896 1.22794 0.83492 0.80944 0.99492 1.46474 1.06032 1.56994 1.11979 1.22555 0.98842 1.01060 0.81994 1.21099 0.97453 0.92036 0.90013 1.46056 1.61585 1.10016 1.24516 1.18276 0.79696 0.81153 0.85001 1.90620 1.58871 1.29962 1.66539 1.20882 1.36653 0.93440 1.07028 0.91175 1.25727 0.94595 0.94979 0.98069 1.70020 1.35401 0.97949 1.36079 0.86280 0.79561 0.79142 0.81572 1.18720 1.20140 1.20104 1.17414 0.88452 0.79371 0.79274 1.91076 1.10452 1.50976 1.84902 1.69745 1.06353 1.33892 1.26029 1.20081 0.87062 0.78840 0.85533 1.84990 1.37705 1.86006 1.14866 0.78470 0.87641 0.86588 0.92127 0.92679 0.78554 0.92011 0.71894 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.41 -4.82 18.54 41.84 0.78 -4.05 16 2 C 0.28 2.61 14.99 -22.47 -0.34 2.28 16 3 C -0.20 -1.61 5.77 -106.48 -0.61 -2.22 16 4 C 0.28 1.87 10.14 -16.10 -0.16 1.71 16 5 N -0.50 -5.08 2.56 -121.41 -0.31 -5.39 16 6 C 0.08 0.81 5.44 -4.04 -0.02 0.79 16 7 C 0.12 1.97 6.00 -4.04 -0.02 1.95 16 8 N -0.76 -15.19 5.55 -61.72 -0.34 -15.53 16 9 C 0.55 14.96 7.75 -12.99 -0.10 14.86 16 10 O -0.58 -18.13 15.02 5.20 0.08 -18.05 16 11 C -0.54 -14.62 9.54 -35.63 -0.34 -14.96 16 12 H 0.07 1.71 7.85 -52.49 -0.41 1.29 16 13 C 0.09 2.33 5.50 -17.37 -0.10 2.24 16 14 N -0.77 -22.41 11.83 55.55 0.66 -21.76 16 15 Si 0.91 19.44 29.56 -169.99 -5.02 14.41 16 16 H -0.26 -5.39 7.11 56.52 0.40 -4.99 16 17 H -0.28 -5.78 7.11 56.52 0.40 -5.38 16 18 H -0.28 -5.83 7.11 56.52 0.40 -5.43 16 19 C 0.65 8.98 8.32 -88.51 -0.74 8.24 16 20 O -0.50 -9.02 16.67 4.99 0.08 -8.94 16 21 N -0.60 -7.22 10.38 -16.46 -0.17 -7.40 16 22 C 0.49 4.38 7.92 -15.91 -0.13 4.25 16 23 O -0.44 -2.99 13.06 -16.82 -0.22 -3.21 16 24 H 0.20 0.52 8.05 -52.49 -0.42 0.09 16 25 H 0.11 0.68 8.02 -51.93 -0.42 0.26 16 26 H 0.12 1.32 7.35 -51.93 -0.38 0.94 16 27 H 0.06 1.21 8.14 -51.93 -0.42 0.78 16 28 H 0.05 0.91 8.14 -51.93 -0.42 0.48 16 29 H 0.38 6.29 8.45 -40.82 -0.35 5.94 16 30 H 0.27 7.12 8.29 -40.82 -0.34 6.79 16 31 H 0.42 1.16 8.98 45.56 0.41 1.57 16 LS Contribution 299.12 15.07 4.51 4.51 Total: -1.00 -39.84 299.12 -4.07 -43.91 By element: Atomic # 1 Polarization: 3.91 SS G_CDS: -1.55 Total: 2.36 kcal Atomic # 6 Polarization: 21.68 SS G_CDS: -2.56 Total: 19.12 kcal Atomic # 7 Polarization: -54.73 SS G_CDS: 0.61 Total: -54.12 kcal Atomic # 8 Polarization: -30.13 SS G_CDS: -0.06 Total: -30.19 kcal Atomic # 14 Polarization: 19.44 SS G_CDS: -5.02 Total: 14.41 kcal Total LS contribution 4.51 Total: 4.51 kcal Total: -39.84 -4.07 -43.91 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001630030712.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 10.744 kcal (2) G-P(sol) polarization free energy of solvation -39.838 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -29.094 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.074 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.913 kcal (6) G-S(sol) free energy of system = (1) + (5) -33.168 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds