Wall clock time and date at job start Mon Mar 30 2020 23:59:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13594 * 1 3 3 C 1.43204 * 179.97438 * 2 1 4 4 C 1.38280 * 120.73180 * 269.27904 * 3 2 1 5 5 N 1.35093 * 119.00604 * 179.97438 * 4 3 2 6 6 C 1.46500 * 119.71153 * 180.02562 * 5 4 3 7 7 C 1.52997 * 109.47473 * 89.99786 * 6 5 4 8 8 N 1.46505 * 109.47212 * 179.97438 * 7 6 5 9 9 C 1.34771 * 119.99622 * 179.97438 * 8 7 6 10 10 O 1.21685 * 120.00526 * 0.02562 * 9 8 7 11 11 C 1.46381 * 119.99614 * 180.02562 * 9 8 7 12 12 H 1.07993 * 120.00106 * 0.02562 * 11 9 8 13 13 C 1.40051 * 119.99693 * 180.02562 * 11 9 8 14 14 N 1.30666 * 120.00364 * 359.97438 * 13 11 9 15 15 Si 1.86805 * 119.99754 * 180.02562 * 13 11 9 16 16 H 1.48505 * 109.46882 * 0.02562 * 15 13 11 17 17 H 1.48495 * 109.47005 * 119.99582 * 15 13 11 18 18 H 1.48493 * 109.47394 * 240.00062 * 15 13 11 19 19 C 1.34457 * 120.57243 * 0.27056 * 5 4 3 20 20 O 1.21917 * 119.19964 * 179.70433 * 19 5 4 21 21 N 1.33305 * 121.59194 * 359.44252 * 19 5 4 22 22 C 1.32225 * 120.94691 * 0.56009 * 21 19 5 23 23 O 1.35038 * 120.32348 * 179.70194 * 22 21 19 24 24 H 1.08001 * 120.49742 * 359.95851 * 4 3 2 25 25 H 1.09002 * 109.47129 * 329.99529 * 6 5 4 26 26 H 1.08998 * 109.46845 * 210.00336 * 6 5 4 27 27 H 1.09002 * 109.47153 * 59.99757 * 7 6 5 28 28 H 1.09001 * 109.46832 * 299.99948 * 7 6 5 29 29 H 0.96996 * 119.99606 * 0.02562 * 8 7 6 30 30 H 0.97002 * 120.00059 * 179.97438 * 14 13 11 31 31 H 0.96696 * 113.99834 * 0.02562 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1359 0.0000 0.0000 3 6 2.5680 0.0006 0.0000 4 6 3.2746 0.0159 1.1885 5 7 4.6249 0.0155 1.1478 6 6 5.3890 0.0310 2.3977 7 6 5.6551 -1.4060 2.8507 8 7 6.4197 -1.3904 4.1003 9 6 6.7708 -2.5504 4.6899 10 8 6.4532 -3.6106 4.1841 11 6 7.5343 -2.5348 5.9387 12 1 7.8159 -1.5939 6.3878 13 6 7.8997 -3.7402 6.5511 14 7 7.5586 -4.8786 6.0080 15 14 8.8734 -3.7204 8.1451 16 1 9.1305 -2.3151 8.5507 17 1 8.0969 -4.4075 9.2081 18 1 10.1663 -4.4225 7.9442 19 6 5.2736 0.0059 -0.0298 20 8 6.4928 0.0112 -0.0374 21 7 4.6160 -0.0145 -1.1892 22 6 3.2942 -0.0150 -1.2212 23 8 2.6408 -0.0297 -2.4030 24 1 2.7548 0.0283 2.1351 25 1 4.8192 0.5544 3.1655 26 1 6.3378 0.5430 2.2372 27 1 6.2249 -1.9294 2.0830 28 1 4.7062 -1.9178 3.0113 29 1 6.6726 -0.5453 4.5036 30 1 7.8120 -5.7135 6.4320 31 1 3.2236 -0.0396 -3.1745 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001630030712.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 23:59:59 Heat of formation + Delta-G solvation = -70.299965 kcal Electronic energy + Delta-G solvation = -20204.815291 eV Core-core repulsion = 16679.349165 eV Total energy + Delta-G solvation = -3525.466126 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 278.085 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -43.14308 -40.10155 -39.38561 -38.34505 -37.50907 -36.45932 -34.98447 -34.37942 -32.75849 -30.47009 -28.16431 -26.37453 -25.49846 -24.01377 -21.81898 -21.03659 -20.64760 -19.45702 -19.24350 -17.89755 -17.59894 -17.20614 -16.66602 -16.19743 -15.96586 -15.73968 -15.51639 -15.46137 -15.02832 -14.72092 -14.40053 -14.24218 -14.19385 -13.78556 -13.74348 -13.07670 -12.84756 -12.64817 -12.53888 -12.41213 -12.15060 -11.95410 -11.37885 -11.18801 -10.93833 -9.93952 -9.84093 -9.55402 -8.28832 -6.84338 -0.56815 -0.01284 0.94931 1.42947 1.44095 1.57333 1.61577 1.98702 2.07868 2.26582 2.47957 2.60091 2.64504 2.98474 3.07420 3.52796 3.61134 3.74939 3.82720 4.01690 4.09416 4.32376 4.57335 4.76451 4.94407 5.06232 5.34762 5.87406 6.05524 6.17211 6.26678 6.43232 6.48883 6.85948 6.88645 7.53670 8.48837 8.67725 Molecular weight = 278.08amu Principal moments of inertia in cm(-1) A = 0.031840 B = 0.003354 C = 0.003206 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 879.195789 B = 8346.378494 C = 8730.975678 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.448 5.448 2 C 0.306 3.694 3 C -0.201 4.201 4 C 0.301 3.699 5 N -0.504 5.504 6 C 0.095 3.905 7 C 0.123 3.877 8 N -0.748 5.748 9 C 0.537 3.463 10 O -0.634 6.634 11 C -0.568 4.568 12 H 0.094 0.906 13 C 0.027 3.973 14 N -0.823 5.823 15 Si 0.998 3.002 16 H -0.243 1.243 17 H -0.269 1.269 18 H -0.274 1.274 19 C 0.650 3.350 20 O -0.562 6.562 21 N -0.630 5.630 22 C 0.499 3.501 23 O -0.436 6.436 24 H 0.250 0.750 25 H 0.164 0.836 26 H 0.108 0.892 27 H 0.015 0.985 28 H 0.057 0.943 29 H 0.403 0.597 30 H 0.274 0.726 31 H 0.440 0.560 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.431 14.655 -7.401 18.934 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.125 5.125 2 C -0.010 4.010 3 C -0.215 4.215 4 C 0.157 3.843 5 N -0.214 5.214 6 C -0.027 4.027 7 C -0.003 4.003 8 N -0.404 5.404 9 C 0.342 3.658 10 O -0.521 6.521 11 C -0.605 4.605 12 H 0.112 0.888 13 C -0.188 4.188 14 N -0.453 5.453 15 Si 0.818 3.182 16 H -0.166 1.166 17 H -0.194 1.194 18 H -0.199 1.199 19 C 0.352 3.648 20 O -0.437 6.437 21 N -0.389 5.389 22 C 0.297 3.703 23 O -0.233 6.233 24 H 0.266 0.734 25 H 0.182 0.818 26 H 0.126 0.874 27 H 0.034 0.966 28 H 0.076 0.924 29 H 0.238 0.762 30 H 0.084 0.916 31 H 0.301 0.699 Dipole moment (debyes) X Y Z Total from point charges -10.446 13.724 -8.177 19.087 hybrid contribution 1.088 -0.244 0.400 1.185 sum -9.358 13.480 -7.777 18.159 Atomic orbital electron populations 1.81341 1.12479 1.11640 1.07044 1.24303 0.90857 0.92220 0.93651 1.15156 0.86007 1.29190 0.91101 1.23528 0.81806 0.77903 1.01075 1.46222 1.07246 1.57149 1.10779 1.22414 1.00154 0.96885 0.83201 1.21121 0.96027 0.96007 0.87179 1.45535 1.60739 1.09066 1.25099 1.18636 0.79643 0.82019 0.85528 1.90575 1.60934 1.32533 1.68036 1.21472 1.36771 0.94774 1.07487 0.88782 1.26994 0.95342 0.94215 1.02282 1.70195 1.37402 0.99098 1.38593 0.84961 0.77316 0.80132 0.75823 1.16569 1.19439 1.19921 1.17588 0.88030 0.78777 0.80422 1.91031 1.12860 1.53991 1.85843 1.69663 1.07749 1.35808 1.25684 1.20188 0.86244 0.77307 0.86567 1.84997 1.38012 1.85187 1.15107 0.73394 0.81824 0.87364 0.96624 0.92425 0.76205 0.91649 0.69866 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.45 -9.69 18.54 19.00 0.35 -9.33 16 2 C 0.31 4.94 14.99 88.33 1.32 6.27 16 3 C -0.20 -2.65 5.77 -21.07 -0.12 -2.78 16 4 C 0.30 2.92 10.14 84.20 0.85 3.77 16 5 N -0.50 -9.08 2.56 -656.32 -1.68 -10.76 16 6 C 0.10 1.75 5.44 86.38 0.47 2.22 16 7 C 0.12 3.96 6.00 86.38 0.52 4.48 16 8 N -0.75 -29.20 5.55 -467.40 -2.59 -31.80 16 9 C 0.54 29.41 7.75 86.36 0.67 30.08 16 10 O -0.63 -41.25 15.02 -4.30 -0.06 -41.32 16 11 C -0.57 -30.45 9.54 24.83 0.24 -30.22 16 12 H 0.09 4.40 7.85 -2.91 -0.02 4.38 16 13 C 0.03 1.44 5.50 85.31 0.47 1.91 16 14 N -0.82 -49.41 11.83 21.84 0.26 -49.15 16 15 Si 1.00 39.37 29.56 68.60 2.03 41.40 16 16 H -0.24 -8.68 7.11 99.48 0.71 -7.97 16 17 H -0.27 -10.25 7.11 99.48 0.71 -9.54 16 18 H -0.27 -10.63 7.11 99.48 0.71 -9.93 16 19 C 0.65 17.71 8.32 179.61 1.49 19.21 16 20 O -0.56 -20.88 16.67 -5.05 -0.08 -20.96 16 21 N -0.63 -14.81 10.38 -438.17 -4.55 -19.35 16 22 C 0.50 8.13 7.92 85.59 0.68 8.80 16 23 O -0.44 -5.15 13.06 -83.11 -1.09 -6.24 16 24 H 0.25 -0.20 8.05 -2.91 -0.02 -0.23 16 25 H 0.16 1.18 8.02 -2.39 -0.02 1.16 16 26 H 0.11 2.28 7.35 -2.39 -0.02 2.27 16 27 H 0.02 0.64 8.14 -2.39 -0.02 0.62 16 28 H 0.06 1.84 8.14 -2.39 -0.02 1.82 16 29 H 0.40 12.40 8.45 -92.71 -0.78 11.61 16 30 H 0.27 14.89 8.29 -92.71 -0.77 14.12 16 31 H 0.44 1.79 8.98 -74.06 -0.67 1.13 16 Total: -1.00 -93.29 299.12 -1.05 -94.34 By element: Atomic # 1 Polarization: 9.66 SS G_CDS: -0.22 Total: 9.44 kcal Atomic # 6 Polarization: 37.15 SS G_CDS: 6.59 Total: 43.74 kcal Atomic # 7 Polarization: -112.19 SS G_CDS: -8.21 Total: -120.40 kcal Atomic # 8 Polarization: -67.28 SS G_CDS: -1.23 Total: -68.51 kcal Atomic # 14 Polarization: 39.37 SS G_CDS: 2.03 Total: 41.40 kcal Total: -93.29 -1.05 -94.34 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001630030712.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 24.036 kcal (2) G-P(sol) polarization free energy of solvation -93.289 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -69.252 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.048 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -94.336 kcal (6) G-S(sol) free energy of system = (1) + (5) -70.300 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds