Wall clock time and date at job start Tue Mar 31 2020 01:05:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50695 * 1 3 3 O 1.34906 * 126.33658 * 2 1 4 4 C 1.34536 * 107.68457 * 180.30003 * 3 2 1 5 5 C 1.47017 * 125.76007 * 179.75837 * 4 3 2 6 6 C 1.36166 * 125.33955 * 359.97438 * 5 4 3 7 7 C 1.37728 * 114.44861 * 179.97438 * 6 5 4 8 8 C 1.33710 * 115.19102 * 359.97438 * 7 6 5 9 9 S 1.75832 * 109.96013 * 359.77313 * 8 7 6 10 10 N 1.31520 * 108.47472 * 359.74002 * 4 3 2 11 11 C 1.34216 * 108.61603 * 0.02562 * 10 4 3 12 12 C 1.50704 * 126.05167 * 180.02562 * 11 10 4 13 13 N 1.46898 * 109.47041 * 90.02293 * 12 11 10 14 14 C 1.46906 * 110.99888 * 179.97438 * 13 12 11 15 15 C 1.50699 * 109.47140 * 179.97438 * 14 13 12 16 16 H 1.08003 * 119.99962 * 359.97438 * 15 14 13 17 17 C 1.37873 * 119.99861 * 180.02562 * 15 14 13 18 18 N 1.31513 * 119.99892 * 180.02562 * 17 15 14 19 19 Si 1.86805 * 120.00241 * 359.97438 * 17 15 14 20 20 H 1.48499 * 109.47135 * 90.00125 * 19 17 15 21 21 H 1.48503 * 109.47215 * 210.00315 * 19 17 15 22 22 H 1.48508 * 109.46958 * 330.00276 * 19 17 15 23 23 H 1.09004 * 109.46942 * 270.14062 * 1 2 3 24 24 H 1.09002 * 109.47477 * 30.13866 * 1 2 3 25 25 H 1.08997 * 109.47006 * 150.14335 * 1 2 3 26 26 H 1.08006 * 122.77939 * 359.97342 * 6 5 4 27 27 H 1.08000 * 122.40558 * 180.02562 * 7 6 5 28 28 H 1.08003 * 125.02189 * 179.97438 * 8 7 6 29 29 H 1.08997 * 109.46924 * 330.02205 * 12 11 10 30 30 H 1.08995 * 109.46962 * 210.02359 * 12 11 10 31 31 H 1.00901 * 111.00121 * 56.04537 * 13 12 11 32 32 H 1.09004 * 109.47040 * 299.99934 * 14 13 12 33 33 H 1.09000 * 109.47033 * 59.99886 * 14 13 12 34 34 H 0.97002 * 119.99998 * 180.02562 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 8 2.3063 1.0867 0.0000 4 6 3.5810 0.6565 -0.0067 5 6 4.7765 1.5120 -0.0141 6 6 4.7706 2.8737 -0.0158 7 6 6.0219 3.4492 -0.0226 8 6 7.0445 2.5877 -0.0260 9 16 6.4388 0.9370 -0.0138 10 7 3.5769 -0.6587 -0.0051 11 6 2.3037 -1.0832 0.0020 12 6 1.8477 -2.5196 0.0067 13 7 1.7061 -2.9839 1.3932 14 6 1.2614 -4.3834 1.4369 15 6 1.1282 -4.8235 2.8720 16 1 1.3521 -4.1329 3.6716 17 6 0.7218 -6.1082 3.1641 18 7 0.6051 -6.4922 4.4165 19 14 0.3353 -7.3029 1.7810 20 1 1.5673 -8.0433 1.4077 21 1 -0.7023 -8.2644 2.2329 22 1 -0.1663 -6.5507 0.6028 23 1 -0.3633 0.0025 1.0277 24 1 -0.3634 0.8887 -0.5160 25 1 -0.3633 -0.8912 -0.5116 26 1 3.8600 3.4545 -0.0121 27 1 6.1667 4.5194 -0.0243 28 1 8.0883 2.8648 -0.0317 29 1 2.5836 -3.1361 -0.5095 30 1 0.8872 -2.5975 -0.5025 31 1 1.0774 -2.3887 1.9114 32 1 0.2965 -4.4737 0.9377 33 1 1.9929 -5.0130 0.9304 34 1 0.3195 -7.3961 4.6220 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001658144616.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:05:27 Heat of formation + Delta-G solvation = 58.881343 kcal Electronic energy + Delta-G solvation = -18127.446241 eV Core-core repulsion = 15153.875052 eV Total energy + Delta-G solvation = -2973.571189 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 278.083 amu Computer time = 0.00 seconds Orbital eigenvalues (eV) -43.20450 -37.91856 -36.15366 -34.38116 -33.03884 -32.05378 -30.23587 -28.50987 -26.46072 -24.79801 -23.80265 -21.95041 -21.20162 -20.94983 -19.08359 -18.13784 -16.89738 -16.73622 -16.26034 -15.60698 -14.99358 -14.48109 -13.97901 -13.83811 -13.58300 -13.47819 -13.24794 -12.99099 -12.91541 -12.57861 -12.46478 -12.33096 -11.66669 -11.51917 -11.17366 -11.01579 -10.67146 -10.59021 -10.34905 -9.91111 -9.59081 -9.31502 -8.75064 -8.59368 -8.08330 -7.50934 -6.05974 -4.04362 0.23043 1.11805 1.62373 1.72958 2.35237 2.72659 2.96567 3.29199 3.36132 3.37435 3.81981 4.41510 4.73840 4.77481 4.82521 5.03532 5.09752 5.24540 5.25854 5.32665 5.38923 5.45395 5.64307 5.79332 5.83487 5.91748 6.04569 6.07994 6.16092 6.35581 6.73025 6.97456 7.56681 7.75539 7.84408 8.26903 8.63319 9.02126 9.55217 11.07299 Molecular weight = 278.08amu Principal moments of inertia in cm(-1) A = 0.026546 B = 0.003494 C = 0.003257 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1054.538240 B = 8011.643470 C = 8594.259472 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.068 4.068 2 C -0.041 4.041 3 O -0.193 6.193 4 C 0.241 3.759 5 C -0.124 4.124 6 C -0.106 4.106 7 C -0.137 4.137 8 C -0.223 4.223 9 S 0.216 5.784 10 N -0.444 5.444 11 C 0.015 3.985 12 C 0.135 3.865 13 N -0.672 5.672 14 C 0.165 3.835 15 C -0.516 4.516 16 H 0.079 0.921 17 C 0.069 3.931 18 N -0.900 5.900 19 Si 0.878 3.122 20 H -0.275 1.275 21 H -0.286 1.286 22 H -0.267 1.267 23 H 0.089 0.911 24 H 0.077 0.923 25 H 0.094 0.906 26 H 0.146 0.854 27 H 0.145 0.855 28 H 0.170 0.830 29 H 0.084 0.916 30 H 0.040 0.960 31 H 0.335 0.665 32 H -0.014 1.014 33 H 0.025 0.975 34 H 0.264 0.736 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.919 20.239 -12.559 24.804 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.125 4.125 2 C -0.096 4.096 3 O -0.081 6.081 4 C 0.037 3.963 5 C -0.243 4.243 6 C -0.141 4.141 7 C -0.167 4.167 8 C -0.360 4.360 9 S 0.482 5.518 10 N -0.173 5.173 11 C -0.107 4.107 12 C 0.005 3.995 13 N -0.303 5.303 14 C 0.038 3.962 15 C -0.554 4.554 16 H 0.097 0.903 17 C -0.133 4.133 18 N -0.539 5.539 19 Si 0.705 3.295 20 H -0.201 1.201 21 H -0.212 1.212 22 H -0.192 1.192 23 H 0.107 0.893 24 H 0.096 0.904 25 H 0.112 0.888 26 H 0.164 0.836 27 H 0.163 0.837 28 H 0.188 0.812 29 H 0.103 0.897 30 H 0.058 0.942 31 H 0.152 0.848 32 H 0.004 0.996 33 H 0.043 0.957 34 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges 8.774 18.116 -12.374 23.628 hybrid contribution -2.359 1.223 -0.795 2.773 sum 6.416 19.339 -13.168 24.260 Atomic orbital electron populations 1.20330 0.83634 1.04219 1.04283 1.23358 0.94813 0.83810 1.07588 1.84441 1.16903 1.36131 1.70619 1.22181 0.81976 0.88309 1.03839 1.21454 0.93478 0.94663 1.14682 1.20627 0.99574 0.91964 1.01904 1.19941 0.91034 1.01294 1.04448 1.26093 1.03750 0.96754 1.09434 1.84633 0.93576 1.04856 1.68756 1.70726 1.23028 1.07293 1.16277 1.21553 0.87527 0.97292 1.04338 1.20224 0.98935 0.87196 0.93185 1.60459 1.55730 1.05253 1.08839 1.20032 0.93000 0.84802 0.98404 1.21030 1.45109 0.98413 0.90884 0.90300 1.24901 0.95036 0.97947 0.95418 1.69900 1.47730 1.18750 1.17483 0.86817 0.78534 0.81289 0.82828 1.20076 1.21212 1.19213 0.89269 0.90415 0.88792 0.83617 0.83715 0.81213 0.89744 0.94218 0.84764 0.99617 0.95709 0.92616 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -0.72 10.21 36.00 0.37 -0.35 16 2 C -0.04 -0.61 7.38 -35.64 -0.26 -0.87 16 3 O -0.19 -2.95 10.79 3.39 0.04 -2.91 16 4 C 0.24 3.85 8.09 -14.13 -0.11 3.74 16 5 C -0.12 -1.63 6.46 -36.77 -0.24 -1.87 16 6 C -0.11 -1.11 10.15 -40.51 -0.41 -1.52 16 7 C -0.14 -1.13 10.15 -41.36 -0.42 -1.55 16 8 C -0.22 -1.82 11.21 29.14 0.33 -1.49 16 9 S 0.22 2.41 23.30 -107.50 -2.50 -0.09 16 10 N -0.44 -8.06 11.33 -8.13 -0.09 -8.15 16 11 C 0.02 0.27 6.61 -82.88 -0.55 -0.28 16 12 C 0.13 2.40 6.01 -4.97 -0.03 2.37 16 13 N -0.67 -14.47 6.48 -116.34 -0.75 -15.22 16 14 C 0.17 4.04 4.51 -4.97 -0.02 4.01 16 15 C -0.52 -14.94 9.87 -34.44 -0.34 -15.28 16 16 H 0.08 2.49 8.06 -52.48 -0.42 2.07 16 17 C 0.07 2.01 5.47 -17.82 -0.10 1.91 16 18 N -0.90 -27.84 13.96 55.43 0.77 -27.06 16 19 Si 0.88 21.56 27.47 -169.99 -4.67 16.89 16 20 H -0.28 -6.68 7.11 56.52 0.40 -6.28 16 21 H -0.29 -6.93 7.11 56.52 0.40 -6.53 16 22 H -0.27 -6.26 6.54 56.52 0.37 -5.89 16 23 H 0.09 0.89 8.14 -51.93 -0.42 0.47 16 24 H 0.08 0.66 8.14 -51.93 -0.42 0.23 16 25 H 0.09 0.91 7.14 -51.93 -0.37 0.54 16 26 H 0.15 1.31 8.06 -52.48 -0.42 0.89 16 27 H 0.15 0.80 8.06 -52.49 -0.42 0.38 16 28 H 0.17 0.89 8.06 -52.48 -0.42 0.47 16 29 H 0.08 1.55 8.14 -51.93 -0.42 1.13 16 30 H 0.04 0.62 7.14 -51.93 -0.37 0.25 16 31 H 0.34 6.92 8.71 -39.29 -0.34 6.57 16 32 H -0.01 -0.33 7.20 -51.93 -0.37 -0.70 16 33 H 0.02 0.62 7.57 -51.93 -0.39 0.22 16 34 H 0.26 7.61 8.31 -40.82 -0.34 7.27 16 LS Contribution 312.93 15.07 4.72 4.72 Total: -1.00 -33.64 312.93 -8.26 -41.90 By element: Atomic # 1 Polarization: 5.08 SS G_CDS: -3.98 Total: 1.10 kcal Atomic # 6 Polarization: -9.39 SS G_CDS: -1.79 Total: -11.17 kcal Atomic # 7 Polarization: -50.37 SS G_CDS: -0.07 Total: -50.44 kcal Atomic # 8 Polarization: -2.95 SS G_CDS: 0.04 Total: -2.91 kcal Atomic # 14 Polarization: 21.56 SS G_CDS: -4.67 Total: 16.89 kcal Atomic # 16 Polarization: 2.41 SS G_CDS: -2.50 Total: -0.09 kcal Total LS contribution 4.72 Total: 4.72 kcal Total: -33.64 -8.26 -41.90 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001658144616.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 100.784 kcal (2) G-P(sol) polarization free energy of solvation -33.643 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 67.141 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.260 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.903 kcal (6) G-S(sol) free energy of system = (1) + (5) 58.881 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.00 seconds