Wall clock time and date at job start Tue Mar 31 2020 01:05:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50695 * 1 3 3 O 1.34906 * 126.33658 * 2 1 4 4 C 1.34536 * 107.68457 * 180.30003 * 3 2 1 5 5 C 1.47017 * 125.76007 * 179.75837 * 4 3 2 6 6 C 1.36166 * 125.33955 * 359.97438 * 5 4 3 7 7 C 1.37728 * 114.44861 * 179.97438 * 6 5 4 8 8 C 1.33710 * 115.19102 * 359.97438 * 7 6 5 9 9 S 1.75832 * 109.96013 * 359.77313 * 8 7 6 10 10 N 1.31520 * 108.47472 * 359.74002 * 4 3 2 11 11 C 1.34216 * 108.61603 * 0.02562 * 10 4 3 12 12 C 1.50704 * 126.05167 * 180.02562 * 11 10 4 13 13 N 1.46898 * 109.47041 * 90.02293 * 12 11 10 14 14 C 1.46906 * 110.99888 * 179.97438 * 13 12 11 15 15 C 1.50699 * 109.47140 * 179.97438 * 14 13 12 16 16 H 1.08003 * 119.99962 * 359.97438 * 15 14 13 17 17 C 1.37873 * 119.99861 * 180.02562 * 15 14 13 18 18 N 1.31513 * 119.99892 * 180.02562 * 17 15 14 19 19 Si 1.86805 * 120.00241 * 359.97438 * 17 15 14 20 20 H 1.48499 * 109.47135 * 90.00125 * 19 17 15 21 21 H 1.48503 * 109.47215 * 210.00315 * 19 17 15 22 22 H 1.48508 * 109.46958 * 330.00276 * 19 17 15 23 23 H 1.09004 * 109.46942 * 270.14062 * 1 2 3 24 24 H 1.09002 * 109.47477 * 30.13866 * 1 2 3 25 25 H 1.08997 * 109.47006 * 150.14335 * 1 2 3 26 26 H 1.08006 * 122.77939 * 359.97342 * 6 5 4 27 27 H 1.08000 * 122.40558 * 180.02562 * 7 6 5 28 28 H 1.08003 * 125.02189 * 179.97438 * 8 7 6 29 29 H 1.08997 * 109.46924 * 330.02205 * 12 11 10 30 30 H 1.08995 * 109.46962 * 210.02359 * 12 11 10 31 31 H 1.00901 * 111.00121 * 56.04537 * 13 12 11 32 32 H 1.09004 * 109.47040 * 299.99934 * 14 13 12 33 33 H 1.09000 * 109.47033 * 59.99886 * 14 13 12 34 34 H 0.97002 * 119.99998 * 180.02562 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 8 2.3063 1.0867 0.0000 4 6 3.5810 0.6565 -0.0067 5 6 4.7765 1.5120 -0.0141 6 6 4.7706 2.8737 -0.0158 7 6 6.0219 3.4492 -0.0226 8 6 7.0445 2.5877 -0.0260 9 16 6.4388 0.9370 -0.0138 10 7 3.5769 -0.6587 -0.0051 11 6 2.3037 -1.0832 0.0020 12 6 1.8477 -2.5196 0.0067 13 7 1.7061 -2.9839 1.3932 14 6 1.2614 -4.3834 1.4369 15 6 1.1282 -4.8235 2.8720 16 1 1.3521 -4.1329 3.6716 17 6 0.7218 -6.1082 3.1641 18 7 0.6051 -6.4922 4.4165 19 14 0.3353 -7.3029 1.7810 20 1 1.5673 -8.0433 1.4077 21 1 -0.7023 -8.2644 2.2329 22 1 -0.1663 -6.5507 0.6028 23 1 -0.3633 0.0025 1.0277 24 1 -0.3634 0.8887 -0.5160 25 1 -0.3633 -0.8912 -0.5116 26 1 3.8600 3.4545 -0.0121 27 1 6.1667 4.5194 -0.0243 28 1 8.0883 2.8648 -0.0317 29 1 2.5836 -3.1361 -0.5095 30 1 0.8872 -2.5975 -0.5025 31 1 1.0774 -2.3887 1.9114 32 1 0.2965 -4.4737 0.9377 33 1 1.9929 -5.0130 0.9304 34 1 0.3195 -7.3961 4.6220 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001658144616.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:05:24 Heat of formation + Delta-G solvation = 32.995623 kcal Electronic energy + Delta-G solvation = -18128.568730 eV Core-core repulsion = 15153.875052 eV Total energy + Delta-G solvation = -2974.693679 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 278.083 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -44.36568 -38.68646 -37.68974 -35.79488 -34.66029 -33.66686 -31.06618 -30.22370 -27.73053 -26.10985 -24.83358 -23.17771 -23.07441 -22.05841 -20.02861 -19.09740 -18.88035 -17.93269 -17.50323 -16.70763 -16.42396 -16.02642 -15.50746 -15.15680 -14.89764 -14.56158 -14.40539 -14.29693 -13.78838 -13.69374 -13.52964 -13.31053 -13.23641 -13.05056 -12.61408 -12.51996 -12.24619 -11.84729 -11.79042 -11.57281 -11.53190 -10.81624 -10.56362 -9.57422 -9.23315 -9.05948 -8.30481 -6.35988 -0.64480 0.27104 0.57991 0.98916 1.36440 1.38487 1.42664 1.49327 1.67863 1.92737 2.34496 2.76955 3.03617 3.50892 3.68127 3.82079 4.08813 4.15205 4.24786 4.45744 4.51439 4.56018 4.62579 4.67191 4.80968 4.88512 4.98103 5.03536 5.06449 5.16498 5.26097 5.40071 5.49580 5.89066 6.50220 6.55695 6.61551 6.72646 7.28787 8.86470 Molecular weight = 278.08amu Principal moments of inertia in cm(-1) A = 0.026546 B = 0.003494 C = 0.003257 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1054.538240 B = 8011.643470 C = 8594.259472 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.068 4.068 2 C -0.031 4.031 3 O -0.195 6.195 4 C 0.242 3.758 5 C -0.172 4.172 6 C -0.085 4.085 7 C -0.142 4.142 8 C -0.191 4.191 9 S 0.169 5.831 10 N -0.486 5.486 11 C -0.020 4.020 12 C 0.142 3.858 13 N -0.688 5.688 14 C 0.177 3.823 15 C -0.530 4.530 16 H 0.032 0.968 17 C 0.007 3.993 18 N -0.948 5.948 19 Si 0.954 3.046 20 H -0.269 1.269 21 H -0.280 1.280 22 H -0.243 1.243 23 H 0.096 0.904 24 H 0.102 0.898 25 H 0.105 0.895 26 H 0.159 0.841 27 H 0.182 0.818 28 H 0.206 0.794 29 H 0.074 0.926 30 H 0.069 0.931 31 H 0.338 0.662 32 H 0.001 0.999 33 H 0.024 0.976 34 H 0.268 0.732 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.818 22.004 -14.660 27.306 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.124 4.124 2 C -0.085 4.085 3 O -0.083 6.083 4 C 0.038 3.962 5 C -0.290 4.290 6 C -0.120 4.120 7 C -0.171 4.171 8 C -0.328 4.328 9 S 0.435 5.565 10 N -0.216 5.216 11 C -0.141 4.141 12 C 0.013 3.987 13 N -0.320 5.320 14 C 0.049 3.951 15 C -0.569 4.569 16 H 0.051 0.949 17 C -0.190 4.190 18 N -0.589 5.589 19 Si 0.777 3.223 20 H -0.194 1.194 21 H -0.205 1.205 22 H -0.166 1.166 23 H 0.114 0.886 24 H 0.121 0.879 25 H 0.124 0.876 26 H 0.177 0.823 27 H 0.199 0.801 28 H 0.223 0.777 29 H 0.092 0.908 30 H 0.086 0.914 31 H 0.155 0.845 32 H 0.019 0.981 33 H 0.042 0.958 34 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges 8.670 19.897 -14.488 26.095 hybrid contribution -2.203 0.894 -0.067 2.379 sum 6.467 20.792 -14.555 26.191 Atomic orbital electron populations 1.20559 0.80616 1.06044 1.05206 1.23998 0.96258 0.82961 1.05313 1.84456 1.16881 1.36257 1.70721 1.22699 0.82852 0.88185 1.02493 1.21602 0.92960 0.95554 1.18873 1.21014 1.01241 0.90968 0.98811 1.20310 0.89807 1.03074 1.03933 1.26529 1.05453 0.94279 1.06531 1.84759 0.93724 1.08175 1.69859 1.70661 1.23887 1.08731 1.18290 1.21521 0.88005 0.97499 1.07100 1.20140 1.00019 0.87617 0.90912 1.60301 1.55903 1.04081 1.11668 1.19770 0.93596 0.86445 0.95281 1.21295 1.45141 0.98141 0.92283 0.94942 1.25916 0.94604 1.00082 0.98398 1.70060 1.48975 1.19613 1.20219 0.85614 0.78615 0.78460 0.79607 1.19420 1.20506 1.16641 0.88600 0.87882 0.87649 0.82338 0.80056 0.77730 0.90781 0.91354 0.84489 0.98102 0.95827 0.92278 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -1.29 10.21 71.23 0.73 -0.56 16 2 C -0.03 -0.89 7.38 24.82 0.18 -0.71 16 3 O -0.20 -5.88 10.79 -10.77 -0.12 -6.00 16 4 C 0.24 7.87 8.09 87.04 0.70 8.58 16 5 C -0.17 -4.48 6.46 24.09 0.16 -4.32 16 6 C -0.08 -1.60 10.15 21.67 0.22 -1.38 16 7 C -0.14 -1.86 10.15 21.12 0.21 -1.65 16 8 C -0.19 -2.55 11.21 66.79 0.75 -1.80 16 9 S 0.17 3.76 23.30 -56.49 -1.32 2.45 16 10 N -0.49 -18.25 11.33 -293.48 -3.33 -21.58 16 11 C -0.02 -0.70 6.61 41.33 0.27 -0.42 16 12 C 0.14 5.05 6.01 85.56 0.51 5.56 16 13 N -0.69 -29.96 6.48 -521.97 -3.38 -33.34 16 14 C 0.18 8.61 4.51 85.56 0.39 9.00 16 15 C -0.53 -31.51 9.87 25.60 0.25 -31.26 16 16 H 0.03 2.16 8.06 -2.91 -0.02 2.14 16 17 C 0.01 0.44 5.47 84.65 0.46 0.90 16 18 N -0.95 -60.15 13.96 21.45 0.30 -59.85 16 19 Si 0.95 44.11 27.47 68.60 1.88 46.00 16 20 H -0.27 -12.13 7.11 99.48 0.71 -11.42 16 21 H -0.28 -12.54 7.11 99.48 0.71 -11.84 16 22 H -0.24 -10.21 6.54 99.48 0.65 -9.56 16 23 H 0.10 1.74 8.14 -2.38 -0.02 1.72 16 24 H 0.10 1.44 8.14 -2.39 -0.02 1.42 16 25 H 0.11 1.77 7.14 -2.39 -0.02 1.76 16 26 H 0.16 2.49 8.06 -2.91 -0.02 2.47 16 27 H 0.18 1.10 8.06 -2.91 -0.02 1.07 16 28 H 0.21 1.25 8.06 -2.91 -0.02 1.23 16 29 H 0.07 2.74 8.14 -2.39 -0.02 2.72 16 30 H 0.07 2.01 7.14 -2.39 -0.02 2.00 16 31 H 0.34 14.19 8.71 -89.69 -0.78 13.41 16 32 H 0.00 0.06 7.20 -2.38 -0.02 0.04 16 33 H 0.02 1.16 7.57 -2.39 -0.02 1.14 16 34 H 0.27 15.76 8.31 -92.71 -0.77 14.99 16 Total: -1.00 -76.29 312.93 -0.82 -77.12 By element: Atomic # 1 Polarization: 12.99 SS G_CDS: 0.29 Total: 13.28 kcal Atomic # 6 Polarization: -22.91 SS G_CDS: 4.84 Total: -18.07 kcal Atomic # 7 Polarization: -108.37 SS G_CDS: -6.41 Total: -114.77 kcal Atomic # 8 Polarization: -5.88 SS G_CDS: -0.12 Total: -6.00 kcal Atomic # 14 Polarization: 44.11 SS G_CDS: 1.88 Total: 46.00 kcal Atomic # 16 Polarization: 3.76 SS G_CDS: -1.32 Total: 2.45 kcal Total: -76.29 -0.82 -77.12 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001658144616.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 110.111 kcal (2) G-P(sol) polarization free energy of solvation -76.292 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 33.819 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.824 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.115 kcal (6) G-S(sol) free energy of system = (1) + (5) 32.996 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds