Wall clock time and date at job start Mon Mar 30 2020 23:37:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31403 * 1 3 3 Si 1.86793 * 120.00393 * 2 1 4 4 H 1.48500 * 109.47369 * 239.99986 * 3 2 1 5 5 H 1.48508 * 109.47005 * 359.97438 * 3 2 1 6 6 H 1.48506 * 109.47548 * 119.99652 * 3 2 1 7 7 C 1.38951 * 119.99905 * 179.97438 * 2 1 3 8 8 H 1.07998 * 120.00320 * 180.02562 * 7 2 1 9 9 N 1.37099 * 119.99862 * 0.02562 * 7 2 1 10 10 C 1.34779 * 120.00192 * 180.02562 * 9 7 2 11 11 O 1.21292 * 119.99595 * 359.97438 * 10 9 7 12 12 C 1.50698 * 120.00463 * 180.02562 * 10 9 7 13 13 N 1.46896 * 109.47257 * 179.97438 * 12 10 9 14 14 C 1.47247 * 110.99831 * 175.00079 * 13 12 10 15 15 C 1.54083 * 114.59331 * 194.46895 * 14 13 12 16 16 S 1.79891 * 112.95430 * 316.84277 * 15 14 13 17 17 O 1.42107 * 108.63077 * 331.41884 * 16 15 14 18 18 O 1.42104 * 108.68392 * 200.21924 * 16 15 14 19 19 C 1.83394 * 101.54568 * 85.80902 * 16 15 14 20 20 C 1.45801 * 109.81874 * 291.08223 * 19 16 15 21 21 O 1.43533 * 114.49030 * 62.88810 * 20 19 16 22 22 H 0.97003 * 119.99828 * 0.02562 * 1 2 3 23 23 H 0.97006 * 120.00298 * 359.97438 * 9 7 2 24 24 H 1.09004 * 109.46982 * 59.99788 * 12 10 9 25 25 H 1.09002 * 109.46881 * 299.99831 * 12 10 9 26 26 H 1.08995 * 108.45672 * 73.14365 * 14 13 12 27 27 H 1.09005 * 108.33038 * 315.69940 * 14 13 12 28 28 H 1.08998 * 108.78690 * 195.94052 * 15 14 13 29 29 H 1.09008 * 108.69394 * 77.67171 * 15 14 13 30 30 H 1.09003 * 109.41546 * 170.97741 * 19 16 15 31 31 H 1.09002 * 109.35597 * 51.14977 * 19 16 15 32 32 H 1.09002 * 108.45626 * 184.13913 * 20 19 16 33 33 H 1.09003 * 108.45403 * 301.64516 * 20 19 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3140 0.0000 0.0000 3 14 2.2481 1.6176 0.0000 4 1 3.1019 1.6963 -1.2125 5 1 1.2831 2.7464 -0.0006 6 1 3.1019 1.6964 1.2126 7 6 2.0088 -1.2034 0.0005 8 1 3.0887 -1.2034 0.0010 9 7 1.3232 -2.3907 0.0005 10 6 1.9970 -3.5579 0.0016 11 8 3.2099 -3.5579 0.0021 12 6 1.2435 -4.8630 0.0010 13 7 2.1981 -5.9796 0.0017 14 6 1.5000 -7.2705 0.1210 15 6 2.4100 -8.4609 0.4802 16 16 3.9578 -8.4624 -0.4365 17 8 3.7453 -7.8220 -1.6872 18 8 4.5003 -9.7755 -0.4116 19 6 5.0038 -7.3764 0.6075 20 6 4.5164 -6.0041 0.5367 21 8 3.1872 -5.8178 1.0454 22 1 -0.4850 0.8401 -0.0004 23 1 0.3532 -2.3907 0.0005 24 1 0.6179 -4.9209 -0.8897 25 1 0.6159 -4.9205 0.8903 26 1 1.0084 -7.4859 -0.8277 27 1 0.7345 -7.1764 0.8913 28 1 1.8759 -9.3873 0.2690 29 1 2.6335 -8.4205 1.5464 30 1 6.0334 -7.4140 0.2515 31 1 4.9648 -7.7219 1.6406 32 1 5.1953 -5.3671 1.1038 33 1 4.5350 -5.6846 -0.5052 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001660672720.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 23:37:55 Heat of formation + Delta-G solvation = -84.725616 kcal Electronic energy + Delta-G solvation = -20536.777903 eV Core-core repulsion = 17113.837434 eV Total energy + Delta-G solvation = -3422.940469 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 278.081 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -38.67867 -37.48726 -36.76410 -35.98939 -34.68553 -33.87564 -31.98845 -31.26826 -30.36276 -26.48502 -24.25640 -23.49367 -21.76335 -19.37056 -18.83693 -17.97092 -17.42294 -16.98874 -16.27774 -16.10097 -15.39774 -15.16999 -14.93334 -14.43366 -14.31289 -14.00320 -13.68138 -13.63960 -13.17255 -12.58435 -12.28019 -12.13773 -12.06204 -11.92468 -11.68442 -11.51495 -11.31222 -11.02154 -10.75762 -10.44670 -10.35396 -10.21058 -9.94585 -9.47902 -8.66733 -8.28083 -7.95443 -6.41043 -3.81580 -0.03689 2.57633 2.83593 3.20596 3.26283 3.30482 3.57938 3.76010 3.92034 4.14687 4.33885 4.45810 4.52965 4.82522 4.99707 5.11884 5.24038 5.30434 5.35769 5.47817 5.59114 5.72011 5.84139 6.03141 6.14568 6.26721 6.66517 7.10155 7.55675 8.05095 8.61787 9.18521 9.53887 10.05584 10.76865 Molecular weight = 278.08amu Principal moments of inertia in cm(-1) A = 0.043339 B = 0.004288 C = 0.004078 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 645.914310 B = 6527.726864 C = 6863.879292 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.903 5.903 2 C 0.022 3.978 3 Si 0.931 3.069 4 H -0.274 1.274 5 H -0.285 1.285 6 H -0.274 1.274 7 C -0.297 4.297 8 H 0.103 0.897 9 N -0.565 5.565 10 C 0.451 3.549 11 O -0.570 6.570 12 C 0.038 3.962 13 N -0.360 5.360 14 C 0.059 3.941 15 C -0.616 4.616 16 S 2.418 3.582 17 O -0.912 6.912 18 O -0.953 6.953 19 C -0.613 4.613 20 C 0.076 3.924 21 O -0.219 6.219 22 H 0.272 0.728 23 H 0.392 0.608 24 H 0.112 0.888 25 H 0.062 0.938 26 H 0.104 0.896 27 H 0.058 0.942 28 H 0.140 0.860 29 H 0.132 0.868 30 H 0.143 0.857 31 H 0.128 0.872 32 H 0.102 0.898 33 H 0.099 0.901 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.177 -15.168 2.295 15.494 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.545 5.545 2 C -0.179 4.179 3 Si 0.758 3.242 4 H -0.199 1.199 5 H -0.210 1.210 6 H -0.200 1.200 7 C -0.426 4.426 8 H 0.121 0.879 9 N -0.202 5.202 10 C 0.235 3.765 11 O -0.453 6.453 12 C -0.092 4.092 13 N -0.128 5.128 14 C -0.070 4.070 15 C -0.744 4.744 16 S 2.598 3.402 17 O -0.909 6.909 18 O -0.950 6.950 19 C -0.742 4.742 20 C -0.003 4.003 21 O -0.226 6.226 22 H 0.081 0.919 23 H 0.225 0.775 24 H 0.129 0.871 25 H 0.080 0.920 26 H 0.122 0.878 27 H 0.077 0.923 28 H 0.159 0.841 29 H 0.151 0.849 30 H 0.161 0.839 31 H 0.146 0.854 32 H 0.120 0.880 33 H 0.117 0.883 Dipole moment (debyes) X Y Z Total from point charges 3.267 -15.390 1.288 15.786 hybrid contribution -0.896 1.003 1.558 2.058 sum 2.371 -14.387 2.847 14.857 Atomic orbital electron populations 1.69598 1.05933 1.28225 1.50718 1.25239 0.95619 0.99667 0.97393 0.85922 0.78750 0.80522 0.79027 1.19897 1.21029 1.19990 1.19628 0.93304 0.82115 1.47590 0.87945 1.41801 1.09138 1.04459 1.64849 1.19373 0.88349 0.84122 0.84618 1.90489 1.13428 1.86747 1.54599 1.22206 0.93539 0.90778 1.02727 1.67417 1.12593 1.01078 1.31694 1.22206 0.94806 0.86680 1.03286 1.30358 1.21343 1.06383 1.16349 1.08196 0.78299 0.75927 0.77807 1.93624 1.84216 1.76384 1.36712 1.93579 1.77374 1.36647 1.87404 1.29592 1.15379 1.13244 1.15993 1.20531 0.84172 0.90949 1.04615 1.90870 1.13439 1.92695 1.25548 0.91857 0.77511 0.87055 0.91987 0.87758 0.92337 0.84141 0.84947 0.83934 0.85390 0.88020 0.88337 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -24.29 13.05 55.50 0.72 -23.56 16 2 C 0.02 0.59 5.50 -17.47 -0.10 0.49 16 3 Si 0.93 20.86 29.55 -169.99 -5.02 15.84 16 4 H -0.27 -6.11 7.11 56.52 0.40 -5.70 16 5 H -0.28 -6.25 7.11 56.52 0.40 -5.85 16 6 H -0.27 -6.11 7.11 56.52 0.40 -5.71 16 7 C -0.30 -8.12 9.68 -14.93 -0.14 -8.27 16 8 H 0.10 2.93 7.16 -52.49 -0.38 2.55 16 9 N -0.57 -13.97 5.29 -10.96 -0.06 -14.03 16 10 C 0.45 10.31 7.63 -10.99 -0.08 10.23 16 11 O -0.57 -14.59 13.38 -16.55 -0.22 -14.81 16 12 C 0.04 0.65 5.87 -4.98 -0.03 0.62 16 13 N -0.36 -5.76 3.93 -114.17 -0.45 -6.20 16 14 C 0.06 0.68 5.46 -3.07 -0.02 0.66 16 15 C -0.62 -5.63 5.73 37.72 0.22 -5.42 16 16 S 2.42 27.78 5.19 -107.50 -0.56 27.23 16 17 O -0.91 -14.06 16.66 -57.82 -0.96 -15.02 16 18 O -0.95 -13.05 18.10 -57.82 -1.05 -14.09 16 19 C -0.61 -6.34 6.18 33.75 0.21 -6.13 16 20 C 0.08 1.13 4.84 33.75 0.16 1.29 16 21 O -0.22 -3.69 8.94 -35.13 -0.31 -4.00 16 22 H 0.27 6.95 8.31 -40.82 -0.34 6.61 16 23 H 0.39 9.21 7.90 -40.82 -0.32 8.89 16 24 H 0.11 1.62 8.14 -51.93 -0.42 1.20 16 25 H 0.06 0.94 7.95 -51.93 -0.41 0.53 16 26 H 0.10 1.04 8.14 -51.93 -0.42 0.61 16 27 H 0.06 0.59 7.83 -51.93 -0.41 0.18 16 28 H 0.14 0.91 8.14 -51.69 -0.42 0.49 16 29 H 0.13 0.98 8.06 -51.69 -0.42 0.57 16 30 H 0.14 1.17 8.14 -51.93 -0.42 0.75 16 31 H 0.13 1.00 8.14 -51.93 -0.42 0.58 16 32 H 0.10 1.48 8.14 -51.93 -0.42 1.06 16 33 H 0.10 1.68 7.23 -51.93 -0.38 1.30 16 LS Contribution 289.60 15.07 4.36 4.36 Total: -1.00 -35.46 289.60 -7.31 -42.77 By element: Atomic # 1 Polarization: 12.03 SS G_CDS: -3.98 Total: 8.05 kcal Atomic # 6 Polarization: -6.74 SS G_CDS: 0.22 Total: -6.52 kcal Atomic # 7 Polarization: -44.01 SS G_CDS: 0.22 Total: -43.80 kcal Atomic # 8 Polarization: -45.39 SS G_CDS: -2.55 Total: -47.93 kcal Atomic # 14 Polarization: 20.86 SS G_CDS: -5.02 Total: 15.84 kcal Atomic # 16 Polarization: 27.78 SS G_CDS: -0.56 Total: 27.23 kcal Total LS contribution 4.36 Total: 4.36 kcal Total: -35.46 -7.31 -42.77 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001660672720.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -41.957 kcal (2) G-P(sol) polarization free energy of solvation -35.463 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -77.419 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.306 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.769 kcal (6) G-S(sol) free energy of system = (1) + (5) -84.726 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds