Wall clock time and date at job start Mon Mar 30 2020 23:37:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31403 * 1 3 3 Si 1.86793 * 120.00393 * 2 1 4 4 H 1.48500 * 109.47369 * 239.99986 * 3 2 1 5 5 H 1.48508 * 109.47005 * 359.97438 * 3 2 1 6 6 H 1.48506 * 109.47548 * 119.99652 * 3 2 1 7 7 C 1.38951 * 119.99905 * 179.97438 * 2 1 3 8 8 H 1.07998 * 120.00320 * 180.02562 * 7 2 1 9 9 N 1.37099 * 119.99862 * 0.02562 * 7 2 1 10 10 C 1.34779 * 120.00192 * 180.02562 * 9 7 2 11 11 O 1.21292 * 119.99595 * 359.97438 * 10 9 7 12 12 C 1.50698 * 120.00463 * 180.02562 * 10 9 7 13 13 N 1.46896 * 109.47257 * 179.97438 * 12 10 9 14 14 C 1.47247 * 110.99831 * 175.00079 * 13 12 10 15 15 C 1.54083 * 114.59331 * 194.46895 * 14 13 12 16 16 S 1.79891 * 112.95430 * 316.84277 * 15 14 13 17 17 O 1.42107 * 108.63077 * 331.41884 * 16 15 14 18 18 O 1.42104 * 108.68392 * 200.21924 * 16 15 14 19 19 C 1.83394 * 101.54568 * 85.80902 * 16 15 14 20 20 C 1.45801 * 109.81874 * 291.08223 * 19 16 15 21 21 O 1.43533 * 114.49030 * 62.88810 * 20 19 16 22 22 H 0.97003 * 119.99828 * 0.02562 * 1 2 3 23 23 H 0.97006 * 120.00298 * 359.97438 * 9 7 2 24 24 H 1.09004 * 109.46982 * 59.99788 * 12 10 9 25 25 H 1.09002 * 109.46881 * 299.99831 * 12 10 9 26 26 H 1.08995 * 108.45672 * 73.14365 * 14 13 12 27 27 H 1.09005 * 108.33038 * 315.69940 * 14 13 12 28 28 H 1.08998 * 108.78690 * 195.94052 * 15 14 13 29 29 H 1.09008 * 108.69394 * 77.67171 * 15 14 13 30 30 H 1.09003 * 109.41546 * 170.97741 * 19 16 15 31 31 H 1.09002 * 109.35597 * 51.14977 * 19 16 15 32 32 H 1.09002 * 108.45626 * 184.13913 * 20 19 16 33 33 H 1.09003 * 108.45403 * 301.64516 * 20 19 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3140 0.0000 0.0000 3 14 2.2481 1.6176 0.0000 4 1 3.1019 1.6963 -1.2125 5 1 1.2831 2.7464 -0.0006 6 1 3.1019 1.6964 1.2126 7 6 2.0088 -1.2034 0.0005 8 1 3.0887 -1.2034 0.0010 9 7 1.3232 -2.3907 0.0005 10 6 1.9970 -3.5579 0.0016 11 8 3.2099 -3.5579 0.0021 12 6 1.2435 -4.8630 0.0010 13 7 2.1981 -5.9796 0.0017 14 6 1.5000 -7.2705 0.1210 15 6 2.4100 -8.4609 0.4802 16 16 3.9578 -8.4624 -0.4365 17 8 3.7453 -7.8220 -1.6872 18 8 4.5003 -9.7755 -0.4116 19 6 5.0038 -7.3764 0.6075 20 6 4.5164 -6.0041 0.5367 21 8 3.1872 -5.8178 1.0454 22 1 -0.4850 0.8401 -0.0004 23 1 0.3532 -2.3907 0.0005 24 1 0.6179 -4.9209 -0.8897 25 1 0.6159 -4.9205 0.8903 26 1 1.0084 -7.4859 -0.8277 27 1 0.7345 -7.1764 0.8913 28 1 1.8759 -9.3873 0.2690 29 1 2.6335 -8.4205 1.5464 30 1 6.0334 -7.4140 0.2515 31 1 4.9648 -7.7219 1.6406 32 1 5.1953 -5.3671 1.1038 33 1 4.5350 -5.6846 -0.5052 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001660672720.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 23:37:55 Heat of formation + Delta-G solvation = -113.788689 kcal Electronic energy + Delta-G solvation = -20538.038172 eV Core-core repulsion = 17113.837434 eV Total energy + Delta-G solvation = -3424.200738 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 278.081 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -40.23018 -38.86156 -37.81329 -36.99841 -35.93852 -35.66415 -33.22802 -32.93283 -31.54462 -27.98899 -25.93386 -24.51575 -22.83615 -21.09324 -19.90326 -19.76602 -18.56644 -18.00819 -17.57804 -17.32379 -16.62290 -16.45096 -16.21970 -16.01102 -15.57534 -15.50985 -15.04954 -14.79452 -14.22489 -13.84986 -13.63237 -13.39679 -13.22425 -13.09376 -13.06758 -12.86686 -12.73178 -12.38902 -12.27862 -12.11193 -11.69717 -11.47376 -11.36933 -11.01535 -10.22378 -9.94994 -9.68556 -8.42209 -5.89554 -0.90955 1.41962 1.43565 1.53701 1.62814 1.80450 2.13568 2.31685 2.74252 2.82330 3.14547 3.25802 3.56131 3.70629 3.84282 4.02993 4.22092 4.31686 4.32994 4.48937 4.53952 4.56765 4.67013 4.78860 4.96112 5.11298 5.42270 5.48317 5.94377 6.05214 6.65943 7.18324 7.61967 8.18243 8.75340 Molecular weight = 278.08amu Principal moments of inertia in cm(-1) A = 0.043339 B = 0.004288 C = 0.004078 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 645.914310 B = 6527.726864 C = 6863.879292 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.923 5.923 2 C -0.013 4.013 3 Si 0.990 3.010 4 H -0.273 1.273 5 H -0.272 1.272 6 H -0.273 1.273 7 C -0.328 4.328 8 H 0.079 0.921 9 N -0.578 5.578 10 C 0.446 3.554 11 O -0.602 6.602 12 C 0.046 3.954 13 N -0.378 5.378 14 C 0.048 3.952 15 C -0.602 4.602 16 S 2.423 3.577 17 O -0.961 6.961 18 O -0.978 6.978 19 C -0.605 4.605 20 C 0.078 3.922 21 O -0.239 6.239 22 H 0.276 0.724 23 H 0.396 0.604 24 H 0.138 0.862 25 H 0.086 0.914 26 H 0.120 0.880 27 H 0.082 0.918 28 H 0.175 0.825 29 H 0.157 0.843 30 H 0.162 0.838 31 H 0.161 0.839 32 H 0.095 0.905 33 H 0.066 0.934 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.385 -16.295 3.269 16.677 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.564 5.564 2 C -0.213 4.213 3 Si 0.814 3.186 4 H -0.199 1.199 5 H -0.197 1.197 6 H -0.198 1.198 7 C -0.457 4.457 8 H 0.097 0.903 9 N -0.216 5.216 10 C 0.233 3.767 11 O -0.486 6.486 12 C -0.084 4.084 13 N -0.148 5.148 14 C -0.080 4.080 15 C -0.733 4.733 16 S 2.608 3.392 17 O -0.958 6.958 18 O -0.975 6.975 19 C -0.734 4.734 20 C 0.000 4.000 21 O -0.246 6.246 22 H 0.085 0.915 23 H 0.230 0.770 24 H 0.156 0.844 25 H 0.104 0.896 26 H 0.138 0.862 27 H 0.100 0.900 28 H 0.193 0.807 29 H 0.175 0.825 30 H 0.179 0.821 31 H 0.179 0.821 32 H 0.112 0.888 33 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges 2.486 -16.549 2.244 16.884 hybrid contribution -0.657 1.294 1.287 1.940 sum 1.829 -15.255 3.531 15.764 Atomic orbital electron populations 1.69660 1.06769 1.29162 1.50822 1.25965 0.96490 1.02227 0.96593 0.85030 0.77753 0.76962 0.78831 1.19861 1.19696 1.19815 1.19594 0.92664 0.83948 1.49519 0.90277 1.41873 1.09268 1.04557 1.65901 1.20461 0.88418 0.85595 0.82275 1.90470 1.15251 1.87629 1.55260 1.22149 0.93312 0.87869 1.05115 1.67410 1.12905 1.02481 1.31961 1.22441 0.95407 0.85001 1.05175 1.30231 1.19001 1.07000 1.17061 1.07740 0.79103 0.74960 0.77406 1.93567 1.85196 1.77024 1.40005 1.93548 1.78459 1.37611 1.87872 1.29465 1.16016 1.10072 1.17884 1.20450 0.83763 0.93409 1.02417 1.90807 1.14168 1.93295 1.26294 0.91460 0.77024 0.84426 0.89608 0.86200 0.89975 0.80732 0.82483 0.82056 0.82069 0.88754 0.91566 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -49.44 13.05 21.66 0.28 -49.16 16 2 C -0.01 -0.71 5.50 84.93 0.47 -0.24 16 3 Si 0.99 42.78 29.55 68.60 2.03 44.81 16 4 H -0.27 -11.72 7.11 99.48 0.71 -11.01 16 5 H -0.27 -11.13 7.11 99.48 0.71 -10.42 16 6 H -0.27 -11.64 7.11 99.48 0.71 -10.93 16 7 C -0.33 -18.33 9.68 84.04 0.81 -17.52 16 8 H 0.08 4.70 7.16 -2.91 -0.02 4.68 16 9 N -0.58 -28.95 5.29 -306.98 -1.62 -30.58 16 10 C 0.45 20.55 7.63 87.66 0.67 21.22 16 11 O -0.60 -31.68 13.38 18.06 0.24 -31.43 16 12 C 0.05 1.49 5.87 85.56 0.50 1.99 16 13 N -0.38 -11.49 3.93 -515.13 -2.03 -13.51 16 14 C 0.05 0.93 5.46 86.60 0.47 1.40 16 15 C -0.60 -8.74 5.73 72.35 0.41 -8.33 16 16 S 2.42 51.88 5.19 -56.49 -0.29 51.59 16 17 O -0.96 -29.55 16.66 -127.38 -2.12 -31.67 16 18 O -0.98 -25.21 18.10 -127.38 -2.31 -27.52 16 19 C -0.60 -11.54 6.18 69.78 0.43 -11.11 16 20 C 0.08 2.31 4.84 69.78 0.34 2.65 16 21 O -0.24 -7.83 8.94 -24.95 -0.22 -8.05 16 22 H 0.28 13.93 8.31 -92.71 -0.77 13.16 16 23 H 0.40 18.74 7.90 -92.70 -0.73 18.01 16 24 H 0.14 3.70 8.14 -2.39 -0.02 3.68 16 25 H 0.09 2.37 7.95 -2.39 -0.02 2.35 16 26 H 0.12 1.97 8.14 -2.39 -0.02 1.95 16 27 H 0.08 1.27 7.83 -2.38 -0.02 1.26 16 28 H 0.18 1.42 8.14 -2.54 -0.02 1.40 16 29 H 0.16 1.59 8.06 -2.53 -0.02 1.57 16 30 H 0.16 2.44 8.14 -2.39 -0.02 2.42 16 31 H 0.16 2.00 8.14 -2.39 -0.02 1.98 16 32 H 0.09 2.82 8.14 -2.39 -0.02 2.80 16 33 H 0.07 2.36 7.23 -2.39 -0.02 2.34 16 Total: -1.00 -78.68 289.60 -1.53 -80.21 By element: Atomic # 1 Polarization: 24.84 SS G_CDS: 0.40 Total: 25.24 kcal Atomic # 6 Polarization: -14.04 SS G_CDS: 4.11 Total: -9.94 kcal Atomic # 7 Polarization: -89.88 SS G_CDS: -3.37 Total: -93.24 kcal Atomic # 8 Polarization: -94.26 SS G_CDS: -4.41 Total: -98.67 kcal Atomic # 14 Polarization: 42.78 SS G_CDS: 2.03 Total: 44.81 kcal Atomic # 16 Polarization: 51.88 SS G_CDS: -0.29 Total: 51.59 kcal Total: -78.68 -1.53 -80.21 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001660672720.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -33.582 kcal (2) G-P(sol) polarization free energy of solvation -78.679 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -112.260 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.529 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.207 kcal (6) G-S(sol) free energy of system = (1) + (5) -113.789 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds