Wall clock time and date at job start Tue Mar 31 2020 01:05:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.08998 * 109.46889 * 2 1 4 4 C 1.50706 * 109.46708 * 119.99468 * 2 1 3 5 5 H 1.08000 * 119.99302 * 120.00101 * 4 2 1 6 6 C 1.37871 * 120.00436 * 299.72635 * 4 2 1 7 7 N 1.31515 * 119.99684 * 359.97438 * 6 4 2 8 8 Si 1.86800 * 120.00405 * 180.02562 * 6 4 2 9 9 H 1.48496 * 109.46683 * 359.97438 * 8 6 4 10 10 H 1.48492 * 109.47426 * 119.99743 * 8 6 4 11 11 H 1.48501 * 109.46833 * 239.99986 * 8 6 4 12 12 N 1.46895 * 109.47264 * 239.99375 * 2 1 3 13 13 C 1.46896 * 111.00286 * 183.95490 * 12 2 1 14 14 C 1.46901 * 110.99816 * 60.00142 * 12 2 1 15 15 C 1.50700 * 109.47247 * 189.99662 * 14 12 2 16 16 C 1.38364 * 119.91377 * 90.00421 * 15 14 12 17 17 C 1.38456 * 120.29209 * 180.02562 * 16 15 14 18 18 Cl 1.73594 * 119.93736 * 179.97438 * 17 16 15 19 19 C 1.38090 * 120.12301 * 359.97438 * 17 16 15 20 20 C 1.39590 * 119.83338 * 0.02562 * 19 17 16 21 21 C 1.43204 * 120.14661 * 179.97438 * 20 19 17 22 22 N 7.86850 * 120.98908 * 258.96908 * 2 1 3 23 23 C 1.37930 * 119.91915 * 269.73254 * 15 14 12 24 24 H 1.09002 * 109.46792 * 60.00409 * 1 2 3 25 25 H 1.09002 * 109.47539 * 180.02562 * 1 2 3 26 26 H 1.09005 * 109.47120 * 300.00634 * 1 2 3 27 27 H 0.97004 * 120.00247 * 180.02562 * 7 6 4 28 28 H 1.09007 * 109.46868 * 59.99912 * 13 12 2 29 29 H 1.09000 * 109.47584 * 180.02562 * 13 12 2 30 30 H 1.09005 * 109.47057 * 300.00495 * 13 12 2 31 31 H 1.08999 * 109.47446 * 310.00393 * 14 12 2 32 32 H 1.09006 * 109.46810 * 70.00068 * 14 12 2 33 33 H 1.08005 * 119.85498 * 359.97438 * 16 15 14 34 34 H 1.08001 * 120.08066 * 179.97438 * 19 17 16 35 35 H 1.08002 * 120.06457 * 359.97438 * 23 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0322 -0.7103 1.2306 5 1 2.6531 -1.5884 1.1315 6 6 1.7038 -0.2360 2.4828 7 7 0.9526 0.8368 2.6033 8 14 2.3270 -1.1160 4.0081 9 1 3.1463 -2.2867 3.6040 10 1 3.1572 -0.1843 4.8128 11 1 1.1722 -1.5772 4.8199 12 7 2.0197 -0.6926 -1.1993 13 6 3.4850 -0.7947 -1.1869 14 6 1.5487 -0.0266 -2.4210 15 6 1.8580 -0.8913 -3.6158 16 6 0.9353 -1.8278 -4.0473 17 6 1.2116 -2.6267 -5.1437 18 17 0.0476 -3.7991 -5.6767 19 6 2.4115 -2.4928 -5.8141 20 6 3.3461 -1.5497 -5.3832 21 6 4.5927 -1.4055 -6.0731 22 7 5.5813 -1.2907 -6.6208 23 6 3.0579 -0.7435 -4.2798 24 1 -0.3633 0.5138 -0.8900 25 1 -0.3634 -1.0277 0.0005 26 1 -0.3633 0.5140 0.8900 27 1 0.7218 1.1708 3.4843 28 1 3.8029 -1.3532 -0.3064 29 1 3.8210 -1.3111 -2.0861 30 1 3.9186 0.2050 -1.1590 31 1 0.4723 0.1323 -2.3564 32 1 2.0520 0.9344 -2.5280 33 1 -0.0043 -1.9365 -3.5259 34 1 2.6265 -3.1166 -6.6691 35 1 3.7749 -0.0087 -3.9446 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000929831782.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:05:53 Heat of formation + Delta-G solvation = 53.125118 kcal Electronic energy + Delta-G solvation = -18605.192244 eV Core-core repulsion = 15629.327740 eV Total energy + Delta-G solvation = -2975.864504 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 278.088 amu Computer time = 2.23 seconds Orbital eigenvalues (eV) -39.91796 -37.24656 -36.89238 -36.13824 -33.20508 -31.69960 -31.14052 -29.10405 -27.12412 -24.80235 -24.31353 -23.31097 -21.80170 -19.65890 -18.35429 -16.52126 -16.38168 -16.11620 -15.27366 -15.13020 -14.49972 -14.02022 -13.91680 -13.83242 -13.33654 -13.10106 -13.06229 -12.64105 -12.49909 -12.02486 -11.80261 -11.62566 -11.47992 -11.19824 -11.07995 -11.03099 -10.70138 -10.63024 -10.21681 -10.12273 -9.92654 -9.09484 -8.92422 -8.86773 -8.47226 -7.31914 -6.07202 -4.11699 0.54658 0.96654 1.88234 2.51007 2.72545 3.26548 3.35035 3.39006 3.59210 3.66413 4.36743 4.54761 4.80100 4.87572 5.03437 5.10765 5.22815 5.29258 5.51016 5.74140 5.90510 5.97081 5.99188 6.10406 6.26413 6.41436 6.47289 6.69863 6.75659 6.95845 7.05175 7.27535 7.41174 7.60975 7.76763 8.08590 8.22691 8.48693 8.94596 9.53862 10.99709 Molecular weight = 278.09amu Principal moments of inertia in cm(-1) A = 0.019878 B = 0.004269 C = 0.003840 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1408.230399 B = 6557.283764 C = 7289.755828 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C 0.212 3.788 3 H 0.000 1.000 4 C -0.504 4.504 5 H 0.065 0.935 6 C 0.060 3.940 7 N -0.893 5.893 8 Si 0.896 3.104 9 H -0.273 1.273 10 H -0.285 1.285 11 H -0.284 1.284 12 N -0.530 5.530 13 C 0.032 3.968 14 C 0.080 3.920 15 C -0.046 4.046 16 C -0.058 4.058 17 C -0.037 4.037 18 Cl -0.064 7.064 19 C -0.072 4.072 20 C -0.021 4.021 21 C 0.261 3.739 22 N -0.418 5.418 23 C -0.061 4.061 24 H 0.009 0.991 25 H 0.036 0.964 26 H 0.086 0.914 27 H 0.260 0.740 28 H 0.078 0.922 29 H 0.045 0.955 30 H 0.013 0.987 31 H 0.091 0.909 32 H 0.039 0.961 33 H 0.144 0.856 34 H 0.139 0.861 35 H 0.137 0.863 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.108 -4.275 -14.554 15.209 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C 0.106 3.894 3 H 0.018 0.982 4 C -0.542 4.542 5 H 0.083 0.917 6 C -0.142 4.142 7 N -0.532 5.532 8 Si 0.724 3.276 9 H -0.197 1.197 10 H -0.212 1.212 11 H -0.210 1.210 12 N -0.255 5.255 13 C -0.116 4.116 14 C -0.048 4.048 15 C -0.047 4.047 16 C -0.078 4.078 17 C -0.064 4.064 18 Cl -0.035 7.035 19 C -0.094 4.094 20 C -0.025 4.025 21 C -0.055 4.055 22 N -0.093 5.093 23 C -0.082 4.082 24 H 0.028 0.972 25 H 0.055 0.945 26 H 0.104 0.896 27 H 0.070 0.930 28 H 0.096 0.904 29 H 0.064 0.936 30 H 0.032 0.968 31 H 0.110 0.890 32 H 0.057 0.943 33 H 0.162 0.838 34 H 0.157 0.843 35 H 0.154 0.846 Dipole moment (debyes) X Y Z Total from point charges 0.053 -4.552 -15.278 15.942 hybrid contribution 0.164 0.215 1.075 1.108 sum 0.217 -4.337 -14.204 14.853 Atomic orbital electron populations 1.21879 0.97621 0.99802 0.99979 1.19291 0.92396 0.92075 0.85588 0.98196 1.21167 1.31173 1.12270 0.89619 0.91738 1.24918 0.95176 0.95030 0.99040 1.69894 1.37140 1.22757 1.23411 0.86472 0.78628 0.79628 0.82889 1.19725 1.21162 1.20999 1.62212 1.09557 1.52341 1.01387 1.22313 0.88605 0.99240 1.01484 1.21203 1.02226 0.93198 0.88148 1.19917 0.92516 0.96247 0.96000 1.21260 1.00633 0.92637 0.93277 1.20655 0.91984 0.95688 0.98056 1.98383 1.58206 1.57175 1.89740 1.20891 0.91390 0.97337 0.99768 1.15715 0.88918 1.00632 0.97251 1.25554 0.92789 0.93731 0.93383 1.81249 1.10962 1.08029 1.09064 1.21269 0.96812 0.97631 0.92535 0.97202 0.94485 0.89591 0.92990 0.90367 0.93636 0.96826 0.89040 0.94336 0.83799 0.84307 0.84564 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.02 8.77 37.16 0.33 -2.69 16 2 C 0.21 4.94 2.06 -68.87 -0.14 4.80 16 3 H 0.00 0.01 8.14 -51.93 -0.42 -0.41 16 4 C -0.50 -13.05 7.92 -34.44 -0.27 -13.32 16 5 H 0.06 1.68 6.39 -52.49 -0.34 1.34 16 6 C 0.06 1.58 5.30 -17.82 -0.09 1.48 16 7 N -0.89 -24.44 11.34 55.43 0.63 -23.81 16 8 Si 0.90 20.64 29.54 -169.99 -5.02 15.62 16 9 H -0.27 -6.22 7.11 56.52 0.40 -5.82 16 10 H -0.29 -6.57 7.11 56.52 0.40 -6.17 16 11 H -0.28 -6.54 7.11 56.52 0.40 -6.14 16 12 N -0.53 -10.18 4.61 -237.73 -1.10 -11.28 16 13 C 0.03 0.57 8.90 60.06 0.53 1.11 16 14 C 0.08 1.23 4.93 -4.98 -0.02 1.20 16 15 C -0.05 -0.58 4.88 -104.69 -0.51 -1.09 16 16 C -0.06 -0.68 9.47 -39.45 -0.37 -1.05 16 17 C -0.04 -0.39 6.31 -39.56 -0.25 -0.64 16 18 Cl -0.06 -0.64 28.95 -51.86 -1.50 -2.14 16 19 C -0.07 -0.71 9.54 -39.13 -0.37 -1.08 16 20 C -0.02 -0.23 5.73 -106.93 -0.61 -0.84 16 21 C 0.26 3.09 15.33 -22.47 -0.34 2.74 16 22 N -0.42 -5.78 18.54 41.83 0.78 -5.00 16 23 C -0.06 -0.70 7.61 -39.16 -0.30 -0.99 16 24 H 0.01 0.18 6.20 -51.93 -0.32 -0.14 16 25 H 0.04 0.82 8.14 -51.93 -0.42 0.39 16 26 H 0.09 2.16 6.09 -51.93 -0.32 1.84 16 27 H 0.26 6.82 8.31 -40.82 -0.34 6.48 16 28 H 0.08 1.54 6.23 -51.92 -0.32 1.22 16 29 H 0.04 0.69 5.90 -51.93 -0.31 0.39 16 30 H 0.01 0.24 8.14 -51.93 -0.42 -0.19 16 31 H 0.09 1.39 5.77 -51.93 -0.30 1.09 16 32 H 0.04 0.58 8.06 -51.93 -0.42 0.16 16 33 H 0.14 1.64 8.06 -52.48 -0.42 1.21 16 34 H 0.14 1.11 8.06 -52.49 -0.42 0.69 16 35 H 0.14 1.45 8.00 -52.49 -0.42 1.03 16 LS Contribution 312.56 15.07 4.71 4.71 Total: -1.00 -27.37 312.56 -7.93 -35.30 By element: Atomic # 1 Polarization: 0.96 SS G_CDS: -3.99 Total: -3.03 kcal Atomic # 6 Polarization: -7.94 SS G_CDS: -2.44 Total: -10.38 kcal Atomic # 7 Polarization: -40.39 SS G_CDS: 0.31 Total: -40.08 kcal Atomic # 14 Polarization: 20.64 SS G_CDS: -5.02 Total: 15.62 kcal Atomic # 17 Polarization: -0.64 SS G_CDS: -1.50 Total: -2.14 kcal Total LS contribution 4.71 Total: 4.71 kcal Total: -27.37 -7.93 -35.30 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000929831782.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 88.430 kcal (2) G-P(sol) polarization free energy of solvation -27.374 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 61.057 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.931 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.305 kcal (6) G-S(sol) free energy of system = (1) + (5) 53.125 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.23 seconds