Wall clock time and date at job start Mon Mar 30 2020 23:44:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31440 * 1 3 3 Si 1.86798 * 120.00217 * 2 1 4 4 H 1.48499 * 109.47105 * 180.02562 * 3 2 1 5 5 H 1.48498 * 109.47412 * 300.00299 * 3 2 1 6 6 H 1.48500 * 109.46980 * 60.00504 * 3 2 1 7 7 C 1.38760 * 119.99833 * 180.02562 * 2 1 3 8 8 H 1.08000 * 120.00017 * 180.02562 * 7 2 1 9 9 O 1.34919 * 119.99782 * 359.97438 * 7 2 1 10 10 C 1.34313 * 116.99677 * 180.02562 * 9 7 2 11 11 O 1.21209 * 119.99961 * 359.97438 * 10 9 7 12 12 C 1.50703 * 119.99876 * 180.28090 * 10 9 7 13 13 C 1.52992 * 109.47157 * 179.72467 * 12 10 9 14 14 H 1.09007 * 109.47163 * 304.99643 * 13 12 10 15 15 N 1.46496 * 109.47726 * 64.99341 * 13 12 10 16 16 C 1.34779 * 119.99563 * 62.20216 * 15 13 12 17 17 N 1.34778 * 120.00521 * 184.63330 * 16 15 13 18 18 O 1.21590 * 120.00259 * 4.63420 * 16 15 13 19 19 C 1.50703 * 109.47396 * 184.99862 * 13 12 10 20 20 C 1.38230 * 120.00266 * 200.00530 * 19 13 12 21 21 C 1.38236 * 119.99904 * 179.78813 * 20 19 13 22 22 C 1.38237 * 120.00103 * 0.43734 * 21 20 19 23 23 C 1.38236 * 119.99842 * 359.81458 * 22 21 20 24 24 C 1.38235 * 120.00126 * 359.97438 * 23 22 21 25 25 H 0.96998 * 119.99850 * 359.97438 * 1 2 3 26 26 H 1.09000 * 109.46827 * 299.72554 * 12 10 9 27 27 H 1.08998 * 109.47430 * 59.71773 * 12 10 9 28 28 H 0.96995 * 120.00475 * 242.20571 * 15 13 12 29 29 H 0.97001 * 119.99199 * 0.02562 * 17 16 15 30 30 H 0.96990 * 120.00575 * 179.97438 * 17 16 15 31 31 H 1.08003 * 120.00285 * 359.97438 * 20 19 13 32 32 H 1.08005 * 120.00121 * 180.27449 * 21 20 19 33 33 H 1.07992 * 119.99975 * 179.83425 * 22 21 20 34 34 H 1.07995 * 120.00022 * 179.97438 * 23 22 21 35 35 H 1.08000 * 120.00373 * 180.02562 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3144 0.0000 0.0000 3 14 2.2485 1.6177 0.0000 4 1 3.7084 1.3463 -0.0006 5 1 1.8897 2.3965 -1.2124 6 1 1.8898 2.3963 1.2126 7 6 2.0082 -1.2017 -0.0005 8 1 3.0882 -1.2018 -0.0001 9 8 1.3335 -2.3701 -0.0005 10 6 2.0650 -3.4966 -0.0005 11 8 3.2754 -3.4331 -0.0010 12 6 1.3808 -4.8393 -0.0069 13 6 2.4344 -5.9485 -0.0125 14 1 3.1119 -5.8020 -0.8538 15 7 3.1944 -5.9067 1.2393 16 6 2.5677 -6.1099 2.4151 17 7 3.2466 -5.9794 3.5720 18 8 1.3898 -6.4110 2.4322 19 6 1.7542 -7.2870 -0.1427 20 6 2.4176 -8.4392 0.2355 21 6 1.7920 -9.6665 0.1202 22 6 0.5062 -9.7424 -0.3818 23 6 -0.1553 -8.5906 -0.7649 24 6 0.4687 -7.3629 -0.6455 25 1 -0.4850 0.8400 0.0004 26 1 0.7582 -4.9340 0.8827 27 1 0.7578 -4.9254 -0.8971 28 1 4.1484 -5.7327 1.2219 29 1 4.1862 -5.7388 3.5584 30 1 2.7956 -6.1252 4.4182 31 1 3.4237 -8.3804 0.6239 32 1 2.3087 -10.5663 0.4198 33 1 0.0184 -10.7014 -0.4744 34 1 -1.1596 -8.6499 -1.1574 35 1 -0.0482 -6.4630 -0.9443 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000011685967.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 23:44:27 Heat of formation + Delta-G solvation = -81.035605 kcal Electronic energy + Delta-G solvation = -21565.580231 eV Core-core repulsion = 18143.188917 eV Total energy + Delta-G solvation = -3422.391315 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 278.110 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -40.35353 -38.74130 -38.59705 -35.68245 -34.48620 -33.52273 -32.11535 -31.31050 -30.56856 -29.22498 -25.60837 -24.24564 -22.41466 -21.68082 -20.49865 -19.30851 -18.28236 -17.71844 -17.40958 -16.83770 -16.09761 -15.24498 -15.04108 -14.93737 -14.47244 -14.33512 -14.22396 -14.00131 -13.88273 -13.22704 -12.89358 -12.65545 -12.22836 -11.89598 -11.55834 -11.51548 -11.13544 -10.88443 -10.78416 -10.39956 -10.33780 -9.94350 -9.76043 -9.43446 -8.98747 -8.85438 -8.72493 -8.55184 -8.43558 -6.37557 -4.05644 1.51666 1.59075 3.11296 3.16182 3.19563 3.26754 3.52035 3.60012 3.91803 4.01574 4.51570 4.70213 5.01171 5.06574 5.12813 5.16329 5.26125 5.35883 5.50926 5.68104 5.73795 5.94264 6.13776 6.20376 6.34916 6.59242 6.61059 6.67229 6.84936 6.86315 6.97942 7.11559 7.16913 7.42236 7.98742 8.22439 8.74772 8.91239 9.11089 9.91258 10.80732 Molecular weight = 278.11amu Principal moments of inertia in cm(-1) A = 0.025486 B = 0.004589 C = 0.004206 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1098.385009 B = 6099.765550 C = 6655.041681 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.865 5.865 2 C 0.041 3.959 3 Si 0.941 3.059 4 H -0.266 1.266 5 H -0.276 1.276 6 H -0.277 1.277 7 C -0.381 4.381 8 H 0.095 0.905 9 O -0.216 6.216 10 C 0.404 3.596 11 O -0.560 6.560 12 C -0.126 4.126 13 C 0.225 3.775 14 H 0.108 0.892 15 N -0.726 5.726 16 C 0.705 3.295 17 N -0.871 5.871 18 O -0.585 6.585 19 C -0.070 4.070 20 C -0.103 4.103 21 C -0.124 4.124 22 C -0.128 4.128 23 C -0.119 4.119 24 C -0.106 4.106 25 H 0.268 0.732 26 H 0.112 0.888 27 H 0.101 0.899 28 H 0.401 0.599 29 H 0.395 0.605 30 H 0.411 0.589 31 H 0.114 0.886 32 H 0.115 0.885 33 H 0.115 0.885 34 H 0.119 0.881 35 H 0.128 0.872 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.110 -15.873 1.536 16.746 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.502 5.502 2 C -0.163 4.163 3 Si 0.766 3.234 4 H -0.190 1.190 5 H -0.202 1.202 6 H -0.202 1.202 7 C -0.458 4.458 8 H 0.112 0.888 9 O -0.123 6.123 10 C 0.250 3.750 11 O -0.458 6.458 12 C -0.165 4.165 13 C 0.119 3.881 14 H 0.126 0.874 15 N -0.380 5.380 16 C 0.403 3.597 17 N -0.438 5.438 18 O -0.462 6.462 19 C -0.071 4.071 20 C -0.122 4.122 21 C -0.142 4.142 22 C -0.146 4.146 23 C -0.137 4.137 24 C -0.124 4.124 25 H 0.078 0.922 26 H 0.130 0.870 27 H 0.119 0.881 28 H 0.235 0.765 29 H 0.222 0.778 30 H 0.242 0.758 31 H 0.132 0.868 32 H 0.133 0.867 33 H 0.133 0.867 34 H 0.137 0.863 35 H 0.146 0.854 Dipole moment (debyes) X Y Z Total from point charges 4.223 -15.906 1.365 16.513 hybrid contribution 1.075 1.027 0.481 1.562 sum 5.298 -14.879 1.846 15.901 Atomic orbital electron populations 1.70008 1.05988 1.27467 1.46753 1.25333 0.95784 0.98839 0.96355 0.85641 0.79378 0.80270 0.78093 1.19048 1.20196 1.20246 1.21235 0.92269 0.79967 1.52300 0.88761 1.83891 1.39420 1.13419 1.75545 1.23074 0.86626 0.87166 0.78090 1.90489 1.15649 1.88209 1.51459 1.21703 0.99171 0.89544 1.06090 1.19308 0.92651 0.90049 0.86060 0.87403 1.44914 1.12000 1.76797 1.04318 1.16009 0.85106 0.77715 0.80833 1.42982 1.14842 1.78485 1.07539 1.90956 1.14241 1.54708 1.86324 1.19991 0.94681 0.94449 0.97976 1.20783 0.99695 0.91982 0.99703 1.21008 0.95468 0.97274 1.00418 1.21054 0.95215 0.98167 1.00160 1.21089 0.99691 0.92590 1.00292 1.21170 0.94138 0.98102 0.99026 0.92188 0.87027 0.88101 0.76505 0.77812 0.75776 0.86750 0.86689 0.86656 0.86252 0.85404 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.86 -25.83 13.67 55.48 0.76 -25.08 16 2 C 0.04 1.16 5.49 -17.53 -0.10 1.07 16 3 Si 0.94 21.45 29.55 -169.99 -5.02 16.43 16 4 H -0.27 -5.94 7.11 56.52 0.40 -5.54 16 5 H -0.28 -6.09 7.11 56.52 0.40 -5.68 16 6 H -0.28 -6.12 7.11 56.52 0.40 -5.72 16 7 C -0.38 -11.36 9.65 30.93 0.30 -11.07 16 8 H 0.09 2.80 6.86 -52.49 -0.36 2.44 16 9 O -0.22 -6.29 9.75 -20.71 -0.20 -6.49 16 10 C 0.40 9.85 7.77 36.01 0.28 10.13 16 11 O -0.56 -13.96 14.59 -19.05 -0.28 -14.24 16 12 C -0.13 -2.41 4.38 -27.89 -0.12 -2.53 16 13 C 0.23 3.55 2.56 -69.09 -0.18 3.37 16 14 H 0.11 1.61 7.96 -51.93 -0.41 1.20 16 15 N -0.73 -10.68 3.74 -59.81 -0.22 -10.91 16 16 C 0.71 11.21 7.88 -86.91 -0.68 10.52 16 17 N -0.87 -10.08 8.88 27.64 0.25 -9.83 16 18 O -0.58 -11.45 14.46 5.29 0.08 -11.37 16 19 C -0.07 -1.03 4.02 -104.62 -0.42 -1.45 16 20 C -0.10 -1.38 8.95 -39.59 -0.35 -1.74 16 21 C -0.12 -1.51 10.05 -39.58 -0.40 -1.91 16 22 C -0.13 -1.53 10.05 -39.58 -0.40 -1.93 16 23 C -0.12 -1.52 10.05 -39.58 -0.40 -1.92 16 24 C -0.11 -1.53 9.12 -39.58 -0.36 -1.89 16 25 H 0.27 7.32 8.31 -40.82 -0.34 6.98 16 26 H 0.11 2.33 6.38 -51.93 -0.33 2.00 16 27 H 0.10 1.72 6.35 -51.93 -0.33 1.39 16 28 H 0.40 5.06 8.85 -40.82 -0.36 4.69 16 29 H 0.39 3.44 8.85 -40.82 -0.36 3.08 16 30 H 0.41 4.26 8.93 -40.82 -0.36 3.90 16 31 H 0.11 1.37 7.72 -52.48 -0.41 0.97 16 32 H 0.12 1.13 8.06 -52.48 -0.42 0.70 16 33 H 0.12 1.09 8.06 -52.49 -0.42 0.67 16 34 H 0.12 1.26 8.06 -52.49 -0.42 0.84 16 35 H 0.13 1.78 5.86 -52.49 -0.31 1.47 16 LS Contribution 306.11 15.07 4.61 4.61 Total: -1.00 -36.34 306.11 -6.50 -42.84 By element: Atomic # 1 Polarization: 17.02 SS G_CDS: -3.64 Total: 13.38 kcal Atomic # 6 Polarization: 3.49 SS G_CDS: -2.83 Total: 0.66 kcal Atomic # 7 Polarization: -46.59 SS G_CDS: 0.78 Total: -45.81 kcal Atomic # 8 Polarization: -31.70 SS G_CDS: -0.40 Total: -32.10 kcal Atomic # 14 Polarization: 21.45 SS G_CDS: -5.02 Total: 16.43 kcal Total LS contribution 4.61 Total: 4.61 kcal Total: -36.34 -6.50 -42.84 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000011685967.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -38.199 kcal (2) G-P(sol) polarization free energy of solvation -36.337 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -74.536 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.500 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.836 kcal (6) G-S(sol) free energy of system = (1) + (5) -81.036 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds