Wall clock time and date at job start Mon Mar 30 2020 23:44:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31440 * 1 3 3 Si 1.86798 * 120.00217 * 2 1 4 4 H 1.48499 * 109.47105 * 180.02562 * 3 2 1 5 5 H 1.48498 * 109.47412 * 300.00299 * 3 2 1 6 6 H 1.48500 * 109.46980 * 60.00504 * 3 2 1 7 7 C 1.38760 * 119.99833 * 180.02562 * 2 1 3 8 8 H 1.08000 * 120.00017 * 180.02562 * 7 2 1 9 9 O 1.34919 * 119.99782 * 359.97438 * 7 2 1 10 10 C 1.34313 * 116.99677 * 180.02562 * 9 7 2 11 11 O 1.21209 * 119.99961 * 359.97438 * 10 9 7 12 12 C 1.50703 * 119.99876 * 180.28090 * 10 9 7 13 13 C 1.52992 * 109.47157 * 179.72467 * 12 10 9 14 14 H 1.09007 * 109.47163 * 304.99643 * 13 12 10 15 15 N 1.46496 * 109.47726 * 64.99341 * 13 12 10 16 16 C 1.34779 * 119.99563 * 62.20216 * 15 13 12 17 17 N 1.34778 * 120.00521 * 184.63330 * 16 15 13 18 18 O 1.21590 * 120.00259 * 4.63420 * 16 15 13 19 19 C 1.50703 * 109.47396 * 184.99862 * 13 12 10 20 20 C 1.38230 * 120.00266 * 200.00530 * 19 13 12 21 21 C 1.38236 * 119.99904 * 179.78813 * 20 19 13 22 22 C 1.38237 * 120.00103 * 0.43734 * 21 20 19 23 23 C 1.38236 * 119.99842 * 359.81458 * 22 21 20 24 24 C 1.38235 * 120.00126 * 359.97438 * 23 22 21 25 25 H 0.96998 * 119.99850 * 359.97438 * 1 2 3 26 26 H 1.09000 * 109.46827 * 299.72554 * 12 10 9 27 27 H 1.08998 * 109.47430 * 59.71773 * 12 10 9 28 28 H 0.96995 * 120.00475 * 242.20571 * 15 13 12 29 29 H 0.97001 * 119.99199 * 0.02562 * 17 16 15 30 30 H 0.96990 * 120.00575 * 179.97438 * 17 16 15 31 31 H 1.08003 * 120.00285 * 359.97438 * 20 19 13 32 32 H 1.08005 * 120.00121 * 180.27449 * 21 20 19 33 33 H 1.07992 * 119.99975 * 179.83425 * 22 21 20 34 34 H 1.07995 * 120.00022 * 179.97438 * 23 22 21 35 35 H 1.08000 * 120.00373 * 180.02562 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3144 0.0000 0.0000 3 14 2.2485 1.6177 0.0000 4 1 3.7084 1.3463 -0.0006 5 1 1.8897 2.3965 -1.2124 6 1 1.8898 2.3963 1.2126 7 6 2.0082 -1.2017 -0.0005 8 1 3.0882 -1.2018 -0.0001 9 8 1.3335 -2.3701 -0.0005 10 6 2.0650 -3.4966 -0.0005 11 8 3.2754 -3.4331 -0.0010 12 6 1.3808 -4.8393 -0.0069 13 6 2.4344 -5.9485 -0.0125 14 1 3.1119 -5.8020 -0.8538 15 7 3.1944 -5.9067 1.2393 16 6 2.5677 -6.1099 2.4151 17 7 3.2466 -5.9794 3.5720 18 8 1.3898 -6.4110 2.4322 19 6 1.7542 -7.2870 -0.1427 20 6 2.4176 -8.4392 0.2355 21 6 1.7920 -9.6665 0.1202 22 6 0.5062 -9.7424 -0.3818 23 6 -0.1553 -8.5906 -0.7649 24 6 0.4687 -7.3629 -0.6455 25 1 -0.4850 0.8400 0.0004 26 1 0.7582 -4.9340 0.8827 27 1 0.7578 -4.9254 -0.8971 28 1 4.1484 -5.7327 1.2219 29 1 4.1862 -5.7388 3.5584 30 1 2.7956 -6.1252 4.4182 31 1 3.4237 -8.3804 0.6239 32 1 2.3087 -10.5663 0.4198 33 1 0.0184 -10.7014 -0.4744 34 1 -1.1596 -8.6499 -1.1574 35 1 -0.0482 -6.4630 -0.9443 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000011685967.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 23:44:26 Heat of formation + Delta-G solvation = -107.703466 kcal Electronic energy + Delta-G solvation = -21566.736637 eV Core-core repulsion = 18143.188917 eV Total energy + Delta-G solvation = -3423.547720 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 278.110 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -41.69422 -40.63515 -39.67141 -37.46939 -36.04116 -34.72137 -34.28638 -32.45966 -31.57688 -30.60855 -27.57407 -25.71734 -23.52685 -22.80768 -22.06341 -20.72761 -19.86626 -19.52374 -18.72736 -18.21491 -17.56104 -16.87822 -16.51258 -16.27573 -16.01608 -15.86310 -15.68548 -15.34003 -15.12910 -14.42989 -14.20156 -14.06591 -13.61450 -13.47897 -13.40229 -12.95720 -12.81413 -12.30832 -12.16925 -11.96629 -11.95102 -11.77489 -11.28998 -10.95322 -10.69557 -10.59316 -10.06152 -9.72171 -9.49133 -8.52679 -6.32708 0.50696 0.59650 1.30896 1.33844 1.52890 1.66823 2.00597 2.11442 2.29198 2.73172 2.98594 2.99979 3.65304 3.77976 3.89087 4.11335 4.18758 4.26665 4.31950 4.49493 4.68471 4.74447 4.83251 4.88951 5.14259 5.19212 5.22241 5.47731 5.62869 5.68778 5.76294 5.84376 5.96379 6.08819 6.19748 6.67704 6.92549 7.14791 7.74217 7.80790 8.68881 Molecular weight = 278.11amu Principal moments of inertia in cm(-1) A = 0.025486 B = 0.004589 C = 0.004206 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1098.385009 B = 6099.765550 C = 6655.041681 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.908 5.908 2 C -0.009 4.009 3 Si 1.019 2.981 4 H -0.261 1.261 5 H -0.261 1.261 6 H -0.263 1.263 7 C -0.417 4.417 8 H 0.086 0.914 9 O -0.253 6.253 10 C 0.404 3.596 11 O -0.565 6.565 12 C -0.114 4.114 13 C 0.230 3.770 14 H 0.115 0.885 15 N -0.721 5.721 16 C 0.697 3.303 17 N -0.853 5.853 18 O -0.624 6.624 19 C -0.083 4.083 20 C -0.112 4.112 21 C -0.127 4.127 22 C -0.129 4.129 23 C -0.126 4.126 24 C -0.129 4.129 25 H 0.277 0.723 26 H 0.095 0.905 27 H 0.118 0.882 28 H 0.411 0.589 29 H 0.410 0.590 30 H 0.418 0.582 31 H 0.125 0.875 32 H 0.142 0.858 33 H 0.144 0.856 34 H 0.138 0.862 35 H 0.122 0.878 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.147 -16.642 1.667 17.819 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.545 5.545 2 C -0.208 4.208 3 Si 0.838 3.162 4 H -0.185 1.185 5 H -0.185 1.185 6 H -0.188 1.188 7 C -0.493 4.493 8 H 0.104 0.896 9 O -0.162 6.162 10 C 0.251 3.749 11 O -0.462 6.462 12 C -0.152 4.152 13 C 0.124 3.876 14 H 0.133 0.867 15 N -0.376 5.376 16 C 0.395 3.605 17 N -0.422 5.422 18 O -0.505 6.505 19 C -0.084 4.084 20 C -0.130 4.130 21 C -0.144 4.144 22 C -0.146 4.146 23 C -0.144 4.144 24 C -0.148 4.148 25 H 0.086 0.914 26 H 0.114 0.886 27 H 0.136 0.864 28 H 0.247 0.753 29 H 0.240 0.760 30 H 0.251 0.749 31 H 0.143 0.857 32 H 0.160 0.840 33 H 0.162 0.838 34 H 0.156 0.844 35 H 0.140 0.860 Dipole moment (debyes) X Y Z Total from point charges 5.314 -16.696 1.515 17.587 hybrid contribution 0.761 1.124 0.461 1.434 sum 6.076 -15.572 1.976 16.832 Atomic orbital electron populations 1.70108 1.07833 1.29186 1.47424 1.26591 0.96845 1.02548 0.94856 0.84547 0.77908 0.74691 0.79074 1.18452 1.18536 1.18764 1.21481 0.92197 0.81103 1.54508 0.89638 1.83919 1.40736 1.14470 1.77050 1.24090 0.86843 0.87765 0.76166 1.90455 1.16113 1.88505 1.51135 1.21766 0.99935 0.87457 1.06054 1.19243 0.91994 0.89626 0.86734 0.86683 1.44842 1.12418 1.76455 1.03894 1.16255 0.84838 0.77624 0.81779 1.42803 1.15550 1.77186 1.06642 1.90927 1.16061 1.56522 1.86979 1.19898 0.95088 0.94102 0.99355 1.20967 1.00306 0.92055 0.99672 1.21381 0.95712 0.97759 0.99596 1.21445 0.95196 0.99075 0.98931 1.21382 1.00634 0.92312 1.00107 1.21296 0.94473 0.98866 1.00127 0.91360 0.88649 0.86405 0.75301 0.75955 0.74904 0.85704 0.84017 0.83810 0.84384 0.85973 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -55.06 13.67 21.63 0.30 -54.76 16 2 C -0.01 -0.51 5.49 84.88 0.47 -0.05 16 3 Si 1.02 43.75 29.55 68.60 2.03 45.77 16 4 H -0.26 -10.82 7.11 99.48 0.71 -10.11 16 5 H -0.26 -10.48 7.11 99.48 0.71 -9.78 16 6 H -0.26 -10.64 7.11 99.48 0.71 -9.93 16 7 C -0.42 -25.48 9.65 67.94 0.66 -24.82 16 8 H 0.09 5.20 6.86 -2.91 -0.02 5.18 16 9 O -0.25 -15.26 9.75 14.86 0.14 -15.12 16 10 C 0.40 20.19 7.77 71.24 0.55 20.74 16 11 O -0.56 -28.46 14.59 20.78 0.30 -28.16 16 12 C -0.11 -4.43 4.38 29.85 0.13 -4.30 16 13 C 0.23 7.24 2.56 44.24 0.11 7.35 16 14 H 0.12 3.40 7.96 -2.38 -0.02 3.38 16 15 N -0.72 -20.84 3.74 -461.41 -1.73 -22.57 16 16 C 0.70 21.83 7.88 179.05 1.41 23.24 16 17 N -0.85 -18.77 8.88 -184.74 -1.64 -20.41 16 18 O -0.62 -24.56 14.46 -4.00 -0.06 -24.62 16 19 C -0.08 -2.42 4.02 -19.86 -0.08 -2.50 16 20 C -0.11 -2.83 8.95 22.27 0.20 -2.63 16 21 C -0.13 -2.79 10.05 22.27 0.22 -2.56 16 22 C -0.13 -2.77 10.05 22.27 0.22 -2.54 16 23 C -0.13 -3.07 10.05 22.27 0.22 -2.85 16 24 C -0.13 -3.71 9.12 22.27 0.20 -3.50 16 25 H 0.28 15.22 8.31 -92.71 -0.77 14.45 16 26 H 0.10 4.12 6.38 -2.39 -0.02 4.10 16 27 H 0.12 4.13 6.35 -2.39 -0.02 4.12 16 28 H 0.41 9.96 8.85 -92.71 -0.82 9.14 16 29 H 0.41 6.47 8.85 -92.71 -0.82 5.65 16 30 H 0.42 8.20 8.93 -92.72 -0.83 7.38 16 31 H 0.13 2.79 7.72 -2.91 -0.02 2.77 16 32 H 0.14 2.30 8.06 -2.91 -0.02 2.27 16 33 H 0.14 2.22 8.06 -2.91 -0.02 2.20 16 34 H 0.14 2.71 8.06 -2.91 -0.02 2.68 16 35 H 0.12 3.48 5.86 -2.91 -0.02 3.46 16 Total: -1.00 -79.70 306.11 2.37 -77.32 By element: Atomic # 1 Polarization: 38.27 SS G_CDS: -1.30 Total: 36.97 kcal Atomic # 6 Polarization: 1.25 SS G_CDS: 4.32 Total: 5.58 kcal Atomic # 7 Polarization: -94.67 SS G_CDS: -3.07 Total: -97.74 kcal Atomic # 8 Polarization: -68.29 SS G_CDS: 0.39 Total: -67.90 kcal Atomic # 14 Polarization: 43.75 SS G_CDS: 2.03 Total: 45.77 kcal Total: -79.70 2.37 -77.32 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000011685967.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -30.379 kcal (2) G-P(sol) polarization free energy of solvation -79.697 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -110.076 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.373 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.324 kcal (6) G-S(sol) free energy of system = (1) + (5) -107.703 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds