Wall clock time and date at job start Mon Mar 30 2020 23:44:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31437 * 1 3 3 Si 1.86801 * 119.99907 * 2 1 4 4 H 1.48500 * 109.47166 * 269.99885 * 3 2 1 5 5 H 1.48494 * 109.47057 * 29.99987 * 3 2 1 6 6 H 1.48507 * 109.46992 * 150.00215 * 3 2 1 7 7 C 1.38756 * 120.00128 * 180.02562 * 2 1 3 8 8 H 1.08004 * 120.00048 * 359.97438 * 7 2 1 9 9 O 1.34914 * 120.00076 * 179.97438 * 7 2 1 10 10 C 1.34312 * 116.99968 * 179.97438 * 9 7 2 11 11 O 1.21211 * 120.00341 * 0.02562 * 10 9 7 12 12 C 1.50705 * 120.00041 * 179.97438 * 10 9 7 13 13 C 1.53001 * 109.46861 * 180.02562 * 12 10 9 14 14 H 1.09000 * 109.47288 * 55.00514 * 13 12 10 15 15 N 1.46493 * 109.47559 * 295.00184 * 13 12 10 16 16 C 1.34776 * 120.00391 * 155.92068 * 15 13 12 17 17 N 1.34776 * 120.00152 * 175.39281 * 16 15 13 18 18 O 1.21590 * 119.99927 * 355.11291 * 16 15 13 19 19 C 1.50705 * 109.46699 * 174.99771 * 13 12 10 20 20 C 1.38235 * 119.99862 * 75.01131 * 19 13 12 21 21 C 1.38237 * 120.00200 * 179.78440 * 20 19 13 22 22 C 1.38233 * 119.99759 * 0.44171 * 21 20 19 23 23 C 1.38240 * 120.00060 * 359.81311 * 22 21 20 24 24 C 1.38230 * 119.99723 * 359.97438 * 23 22 21 25 25 H 0.97005 * 120.00011 * 359.97438 * 1 2 3 26 26 H 1.09005 * 109.46834 * 60.00261 * 12 10 9 27 27 H 1.08997 * 109.47416 * 300.00320 * 12 10 9 28 28 H 0.97001 * 119.99968 * 335.91278 * 15 13 12 29 29 H 0.96999 * 119.99737 * 179.72662 * 17 16 15 30 30 H 0.96992 * 120.00071 * 359.71440 * 17 16 15 31 31 H 1.08000 * 119.99953 * 359.97438 * 20 19 13 32 32 H 1.07996 * 120.00014 * 180.27452 * 21 20 19 33 33 H 1.08001 * 120.00025 * 179.82924 * 22 21 20 34 34 H 1.08001 * 119.99990 * 180.02562 * 23 22 21 35 35 H 1.08007 * 119.99965 * 180.02562 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3144 0.0000 0.0000 3 14 2.2484 1.6178 0.0000 4 1 2.4959 2.0464 -1.4001 5 1 1.4458 2.6526 0.7000 6 1 3.5460 1.4402 0.7000 7 6 2.0082 -1.2016 -0.0005 8 1 1.4682 -2.1370 -0.0005 9 8 3.3573 -1.2016 -0.0011 10 6 3.9671 -2.3984 -0.0010 11 8 3.3070 -3.4150 -0.0010 12 6 5.4721 -2.4772 -0.0022 13 6 5.9058 -3.9445 -0.0025 14 1 5.4430 -4.4600 -0.8440 15 7 5.4854 -4.5784 1.2495 16 6 5.3066 -5.9132 1.3022 17 7 5.0106 -6.5076 2.4750 18 8 5.4072 -6.5804 0.2907 19 6 7.4055 -4.0248 -0.1276 20 6 8.2067 -3.7241 0.9580 21 6 9.5822 -3.8021 0.8447 22 6 10.1568 -4.1720 -0.3569 23 6 9.3557 -4.4677 -1.4441 24 6 7.9802 -4.3940 -1.3294 25 1 -0.4850 0.8401 0.0004 26 1 5.8625 -1.9827 0.8874 27 1 5.8611 -1.9835 -0.8926 28 1 5.3359 -4.0374 2.0406 29 1 4.8780 -7.4678 2.5121 30 1 4.9304 -5.9754 3.2818 31 1 7.7579 -3.4311 1.8957 32 1 10.2079 -3.5714 1.6941 33 1 11.2315 -4.2303 -0.4463 34 1 9.8047 -4.7572 -2.3827 35 1 7.3543 -4.6254 -2.1786 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000011685968.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 23:44:29 Heat of formation + Delta-G solvation = -85.675319 kcal Electronic energy + Delta-G solvation = -21292.315018 eV Core-core repulsion = 17869.722511 eV Total energy + Delta-G solvation = -3422.592508 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 278.110 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -40.26190 -39.02387 -38.82902 -35.97024 -34.70684 -33.50776 -32.31615 -31.19443 -30.84229 -29.72276 -25.81608 -24.05519 -22.67170 -21.64788 -20.53474 -19.75020 -18.14810 -17.94073 -17.46956 -16.82514 -16.42896 -15.60882 -15.29465 -14.87940 -14.80412 -14.59053 -14.13093 -14.08795 -13.54541 -13.39377 -13.15099 -12.78312 -12.44377 -12.20514 -12.01179 -11.52648 -11.21056 -11.15686 -10.96422 -10.48183 -10.37998 -10.04439 -9.71493 -9.50998 -9.24173 -8.94966 -8.88014 -8.70657 -8.67925 -6.37562 -4.13442 1.29313 1.39134 3.07627 3.13409 3.22545 3.33408 3.39831 3.49588 3.73836 4.07510 4.23401 4.64685 4.83680 4.89409 4.94547 5.03166 5.08175 5.12000 5.39297 5.49010 5.54490 5.73897 5.91642 5.94940 6.08934 6.35700 6.44215 6.47042 6.52097 6.71874 6.89827 6.96774 7.07589 7.73338 8.02972 8.15550 8.62190 8.86757 9.00936 9.67808 10.71073 Molecular weight = 278.11amu Principal moments of inertia in cm(-1) A = 0.018706 B = 0.004978 C = 0.004244 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1496.466084 B = 5623.720993 C = 6595.976248 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.876 5.876 2 C 0.065 3.935 3 Si 0.905 3.095 4 H -0.273 1.273 5 H -0.283 1.283 6 H -0.261 1.261 7 C -0.381 4.381 8 H 0.109 0.891 9 O -0.254 6.254 10 C 0.404 3.596 11 O -0.526 6.526 12 C -0.111 4.111 13 C 0.219 3.781 14 H 0.107 0.893 15 N -0.724 5.724 16 C 0.715 3.285 17 N -0.870 5.870 18 O -0.594 6.594 19 C -0.090 4.090 20 C -0.103 4.103 21 C -0.124 4.124 22 C -0.123 4.123 23 C -0.121 4.121 24 C -0.099 4.099 25 H 0.279 0.721 26 H 0.098 0.902 27 H 0.110 0.890 28 H 0.395 0.605 29 H 0.411 0.589 30 H 0.395 0.605 31 H 0.119 0.881 32 H 0.119 0.881 33 H 0.118 0.882 34 H 0.121 0.879 35 H 0.125 0.875 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 18.865 -5.693 4.434 20.198 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.515 5.515 2 C -0.138 4.138 3 Si 0.731 3.269 4 H -0.199 1.199 5 H -0.208 1.208 6 H -0.185 1.185 7 C -0.456 4.456 8 H 0.126 0.874 9 O -0.163 6.163 10 C 0.249 3.751 11 O -0.420 6.420 12 C -0.150 4.150 13 C 0.113 3.887 14 H 0.125 0.875 15 N -0.378 5.378 16 C 0.413 3.587 17 N -0.438 5.438 18 O -0.472 6.472 19 C -0.091 4.091 20 C -0.122 4.122 21 C -0.143 4.143 22 C -0.142 4.142 23 C -0.139 4.139 24 C -0.117 4.117 25 H 0.089 0.911 26 H 0.116 0.884 27 H 0.128 0.872 28 H 0.228 0.772 29 H 0.243 0.757 30 H 0.222 0.778 31 H 0.137 0.863 32 H 0.137 0.863 33 H 0.136 0.864 34 H 0.139 0.861 35 H 0.143 0.857 Dipole moment (debyes) X Y Z Total from point charges 18.606 -6.239 3.477 19.929 hybrid contribution -0.030 0.910 0.842 1.240 sum 18.576 -5.329 4.319 19.802 Atomic orbital electron populations 1.69610 1.05723 1.28347 1.47838 1.24545 0.94988 0.98635 0.95656 0.86224 0.80205 0.81584 0.78927 1.19881 1.20836 1.18473 1.20630 0.76195 0.96892 1.51933 0.87385 1.83515 1.23934 1.31426 1.77421 1.22799 0.90306 0.82816 0.79159 1.90665 1.66756 1.35980 1.48558 1.21468 0.91424 0.96267 1.05827 1.19373 0.88907 0.91850 0.88563 0.87493 1.44832 1.73498 1.05890 1.13576 1.15807 0.76991 0.82113 0.83741 1.42925 1.79364 1.12121 1.09362 1.90929 1.58981 1.63736 1.33559 1.20255 0.95432 0.99248 0.94188 1.20927 0.93423 0.99529 0.98282 1.21089 0.94853 1.00624 0.97687 1.21124 0.99590 1.00051 0.93389 1.21119 0.93655 1.00400 0.98762 1.21081 0.94974 0.98300 0.97371 0.91073 0.88390 0.87166 0.77172 0.75730 0.77813 0.86325 0.86316 0.86400 0.86113 0.85711 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.88 -25.84 13.96 55.48 0.77 -25.07 16 2 C 0.07 1.85 5.49 -17.53 -0.10 1.75 16 3 Si 0.91 21.09 28.62 -169.99 -4.86 16.23 16 4 H -0.27 -6.24 7.11 56.52 0.40 -5.84 16 5 H -0.28 -6.37 7.11 56.52 0.40 -5.97 16 6 H -0.26 -5.88 7.11 56.52 0.40 -5.48 16 7 C -0.38 -11.16 10.10 30.92 0.31 -10.84 16 8 H 0.11 3.52 7.09 -52.48 -0.37 3.15 16 9 O -0.25 -6.47 8.58 -20.69 -0.18 -6.65 16 10 C 0.40 8.95 7.77 36.01 0.28 9.23 16 11 O -0.53 -13.38 14.59 -19.05 -0.28 -13.66 16 12 C -0.11 -1.71 5.28 -27.88 -0.15 -1.86 16 13 C 0.22 3.32 1.76 -69.08 -0.12 3.20 16 14 H 0.11 1.95 7.16 -51.93 -0.37 1.58 16 15 N -0.72 -10.49 3.67 -59.81 -0.22 -10.71 16 16 C 0.72 11.48 8.78 -86.92 -0.76 10.72 16 17 N -0.87 -9.76 8.88 27.63 0.25 -9.52 16 18 O -0.59 -12.11 16.83 5.29 0.09 -12.02 16 19 C -0.09 -1.18 4.89 -104.62 -0.51 -1.69 16 20 C -0.10 -1.18 9.29 -39.58 -0.37 -1.54 16 21 C -0.12 -1.28 10.05 -39.58 -0.40 -1.67 16 22 C -0.12 -1.24 10.05 -39.58 -0.40 -1.64 16 23 C -0.12 -1.32 10.05 -39.58 -0.40 -1.72 16 24 C -0.10 -1.25 9.67 -39.59 -0.38 -1.63 16 25 H 0.28 7.52 8.31 -40.82 -0.34 7.18 16 26 H 0.10 1.25 8.14 -51.93 -0.42 0.83 16 27 H 0.11 1.50 8.14 -51.93 -0.42 1.08 16 28 H 0.39 4.81 8.61 -40.82 -0.35 4.46 16 29 H 0.41 4.08 8.93 -40.82 -0.36 3.71 16 30 H 0.39 3.21 8.85 -40.82 -0.36 2.85 16 31 H 0.12 1.16 7.87 -52.49 -0.41 0.75 16 32 H 0.12 0.95 8.06 -52.49 -0.42 0.52 16 33 H 0.12 0.91 8.06 -52.49 -0.42 0.49 16 34 H 0.12 1.05 8.06 -52.49 -0.42 0.63 16 35 H 0.12 1.52 8.00 -52.48 -0.42 1.10 16 LS Contribution 314.88 15.07 4.75 4.75 Total: -1.00 -36.73 314.88 -6.58 -43.31 By element: Atomic # 1 Polarization: 14.94 SS G_CDS: -3.90 Total: 11.04 kcal Atomic # 6 Polarization: 5.30 SS G_CDS: -2.99 Total: 2.31 kcal Atomic # 7 Polarization: -46.10 SS G_CDS: 0.80 Total: -45.30 kcal Atomic # 8 Polarization: -31.96 SS G_CDS: -0.37 Total: -32.33 kcal Atomic # 14 Polarization: 21.09 SS G_CDS: -4.86 Total: 16.23 kcal Total LS contribution 4.75 Total: 4.75 kcal Total: -36.73 -6.58 -43.31 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000011685968.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -42.366 kcal (2) G-P(sol) polarization free energy of solvation -36.730 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -79.096 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.580 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.309 kcal (6) G-S(sol) free energy of system = (1) + (5) -85.675 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds