Wall clock time and date at job start Mon Mar 30 2020 23:48:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31408 * 1 3 3 Si 1.86803 * 119.99954 * 2 1 4 4 H 1.48500 * 109.47113 * 179.97438 * 3 2 1 5 5 H 1.48499 * 109.47080 * 300.00170 * 3 2 1 6 6 H 1.48502 * 109.46876 * 60.00073 * 3 2 1 7 7 C 1.38947 * 120.00029 * 180.02562 * 2 1 3 8 8 H 1.08005 * 120.00099 * 179.97438 * 7 2 1 9 9 N 1.37091 * 120.00053 * 0.02562 * 7 2 1 10 10 C 1.34781 * 120.00352 * 180.02562 * 9 7 2 11 11 O 1.21299 * 119.99554 * 359.97438 * 10 9 7 12 12 C 1.50694 * 120.00527 * 179.97438 * 10 9 7 13 13 N 1.46493 * 109.47566 * 179.97438 * 12 10 9 14 14 C 1.34772 * 120.00563 * 180.02562 * 13 12 10 15 15 O 1.21516 * 119.99634 * 359.97438 * 14 13 12 16 16 O 1.34639 * 120.00599 * 180.02562 * 14 13 12 17 17 C 1.45190 * 117.00170 * 179.97438 * 16 14 13 18 18 C 1.50707 * 109.47131 * 179.97438 * 17 16 14 19 19 C 1.38238 * 119.99792 * 90.00017 * 18 17 16 20 20 C 1.38235 * 119.99712 * 179.97438 * 19 18 17 21 21 C 1.38234 * 120.00220 * 359.97124 * 20 19 18 22 22 C 1.38233 * 120.00037 * 0.28719 * 21 20 19 23 23 C 1.38234 * 120.00179 * 269.97954 * 18 17 16 24 24 H 0.97004 * 120.00410 * 0.02562 * 1 2 3 25 25 H 0.97004 * 120.00086 * 359.97438 * 9 7 2 26 26 H 1.09003 * 109.47069 * 59.99476 * 12 10 9 27 27 H 1.09000 * 109.47229 * 300.00004 * 12 10 9 28 28 H 0.97006 * 119.99893 * 359.97438 * 13 12 10 29 29 H 1.09005 * 109.47695 * 59.99979 * 17 16 14 30 30 H 1.09000 * 109.47342 * 299.99215 * 17 16 14 31 31 H 1.08005 * 120.00068 * 359.97438 * 19 18 17 32 32 H 1.07999 * 119.99770 * 179.97438 * 20 19 18 33 33 H 1.08002 * 119.99744 * 180.02562 * 21 20 19 34 34 H 1.07998 * 120.00395 * 179.72811 * 22 21 20 35 35 H 1.07999 * 119.99968 * 359.97438 * 23 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3141 0.0000 0.0000 3 14 2.2481 1.6178 0.0000 4 1 3.7081 1.3464 0.0006 5 1 1.8893 2.3965 -1.2125 6 1 1.8893 2.3964 1.2125 7 6 2.0088 -1.2033 -0.0005 8 1 3.0889 -1.2033 -0.0010 9 7 1.3234 -2.3906 -0.0016 10 6 1.9972 -3.5578 -0.0016 11 8 3.2102 -3.5578 -0.0011 12 6 1.2438 -4.8629 -0.0022 13 7 2.1957 -5.9764 -0.0027 14 6 1.7466 -7.2471 -0.0038 15 8 0.5519 -7.4691 -0.0039 16 8 2.6215 -8.2705 -0.0037 17 6 2.0665 -9.6121 -0.0043 18 6 3.1875 -10.6195 -0.0048 19 6 3.7016 -11.0820 1.1922 20 6 4.7294 -12.0063 1.1917 21 6 5.2428 -12.4686 -0.0056 22 6 4.7323 -12.0021 -1.2025 23 6 3.7013 -11.0812 -1.2021 24 1 -0.4851 0.8400 -0.0004 25 1 0.3533 -2.3906 -0.0016 26 1 0.6174 -4.9204 -0.8924 27 1 0.6168 -4.9209 0.8875 28 1 3.1495 -5.7992 -0.0030 29 1 1.4531 -9.7513 -0.8946 30 1 1.4526 -9.7518 0.8854 31 1 3.3001 -10.7211 2.1277 32 1 5.1313 -12.3674 2.1269 33 1 6.0455 -13.1911 -0.0059 34 1 5.1364 -12.3599 -2.1380 35 1 3.2992 -10.7204 -2.1373 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000013676533.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 23:48:33 Heat of formation + Delta-G solvation = -94.858285 kcal Electronic energy + Delta-G solvation = -19905.064263 eV Core-core repulsion = 16482.073552 eV Total energy + Delta-G solvation = -3422.990711 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 278.110 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -40.40158 -39.37522 -38.39212 -36.45076 -34.54190 -33.78020 -32.33397 -31.40705 -31.19571 -28.06975 -26.41900 -24.52042 -22.87736 -21.75598 -21.09380 -19.73223 -18.69364 -17.99236 -17.32069 -16.58284 -16.47759 -15.68236 -15.30521 -15.23813 -14.98682 -14.46644 -14.36777 -13.73520 -13.70661 -13.62093 -13.12259 -13.07621 -12.53378 -12.20128 -12.02035 -11.65162 -11.37501 -11.36815 -11.15810 -10.62610 -10.49286 -10.41821 -10.32800 -9.67243 -9.20408 -9.16612 -8.96101 -8.67670 -8.12920 -6.53765 -3.95795 0.87626 1.12066 2.37120 2.99255 3.09371 3.21922 3.28768 3.53038 3.70172 4.07484 4.30033 4.53474 4.65443 4.74548 4.81917 4.84389 4.99510 5.14560 5.16777 5.26359 5.36446 5.65609 5.74820 5.78168 5.87994 6.00801 6.13442 6.20849 6.28747 6.35553 6.59794 6.68073 7.44516 7.68955 7.89528 8.41620 8.53158 9.02321 9.35824 9.83463 10.63105 Molecular weight = 278.11amu Principal moments of inertia in cm(-1) A = 0.042943 B = 0.002576 C = 0.002497 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 651.874387 B =10867.599390 C =11209.683657 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.894 5.894 2 C 0.026 3.974 3 Si 0.933 3.067 4 H -0.267 1.267 5 H -0.280 1.280 6 H -0.280 1.280 7 C -0.304 4.304 8 H 0.107 0.893 9 N -0.547 5.547 10 C 0.428 3.572 11 O -0.594 6.594 12 C 0.127 3.873 13 N -0.686 5.686 14 C 0.648 3.352 15 O -0.581 6.581 16 O -0.365 6.365 17 C 0.129 3.871 18 C -0.097 4.097 19 C -0.093 4.093 20 C -0.125 4.125 21 C -0.111 4.111 22 C -0.125 4.125 23 C -0.093 4.093 24 H 0.274 0.726 25 H 0.396 0.604 26 H 0.087 0.913 27 H 0.088 0.912 28 H 0.418 0.582 29 H 0.080 0.920 30 H 0.080 0.920 31 H 0.126 0.874 32 H 0.125 0.875 33 H 0.123 0.877 34 H 0.125 0.875 35 H 0.126 0.874 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.836 -21.394 -0.014 21.934 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.534 5.534 2 C -0.177 4.177 3 Si 0.760 3.240 4 H -0.191 1.191 5 H -0.206 1.206 6 H -0.206 1.206 7 C -0.434 4.434 8 H 0.125 0.875 9 N -0.182 5.182 10 C 0.213 3.787 11 O -0.480 6.480 12 C 0.000 4.000 13 N -0.347 5.347 14 C 0.400 3.600 15 O -0.471 6.471 16 O -0.279 6.279 17 C 0.054 3.946 18 C -0.097 4.097 19 C -0.111 4.111 20 C -0.143 4.143 21 C -0.129 4.129 22 C -0.143 4.143 23 C -0.111 4.111 24 H 0.084 0.916 25 H 0.230 0.770 26 H 0.105 0.895 27 H 0.106 0.894 28 H 0.257 0.743 29 H 0.098 0.902 30 H 0.098 0.902 31 H 0.144 0.856 32 H 0.143 0.857 33 H 0.141 0.859 34 H 0.143 0.857 35 H 0.144 0.856 Dipole moment (debyes) X Y Z Total from point charges 4.916 -21.373 -0.013 21.931 hybrid contribution 0.062 0.903 -0.001 0.906 sum 4.979 -20.469 -0.014 21.066 Atomic orbital electron populations 1.69619 1.06024 1.28486 1.49281 1.25336 0.95681 0.99974 0.96740 0.85746 0.79705 0.80739 0.77838 1.19096 1.20590 1.20595 1.19787 0.93525 0.81887 1.48168 0.87548 1.41775 1.09513 1.04385 1.62567 1.19643 0.88297 0.84849 0.85919 1.90522 1.13620 1.86711 1.57194 1.20949 0.90934 0.84434 1.03684 1.44327 1.12432 1.01430 1.76539 1.17992 0.83424 0.81841 0.76758 1.90981 1.14840 1.84677 1.56606 1.86308 1.39323 1.15028 1.87288 1.21668 0.93125 0.76145 1.03633 1.19581 0.98497 0.97704 0.93892 1.21141 0.95950 0.96408 0.97623 1.21169 0.96989 0.97793 0.98329 1.21241 0.99514 0.99548 0.92626 1.21169 0.96964 0.97808 0.98333 1.21139 0.95924 0.96442 0.97617 0.91597 0.76976 0.89453 0.89442 0.74348 0.90209 0.90203 0.85633 0.85734 0.85914 0.85733 0.85636 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -23.65 13.05 55.50 0.72 -22.93 16 2 C 0.03 0.66 5.50 -17.47 -0.10 0.57 16 3 Si 0.93 20.40 29.55 -169.99 -5.02 15.38 16 4 H -0.27 -5.83 7.11 56.52 0.40 -5.43 16 5 H -0.28 -6.04 7.11 56.52 0.40 -5.63 16 6 H -0.28 -6.04 7.11 56.52 0.40 -5.64 16 7 C -0.30 -8.20 9.68 -14.94 -0.14 -8.35 16 8 H 0.11 3.00 7.16 -52.48 -0.38 2.62 16 9 N -0.55 -13.42 5.29 -10.96 -0.06 -13.48 16 10 C 0.43 9.73 7.85 -10.99 -0.09 9.65 16 11 O -0.59 -15.25 15.24 5.54 0.08 -15.17 16 12 C 0.13 2.32 6.15 -5.20 -0.03 2.28 16 13 N -0.69 -12.04 5.53 -66.47 -0.37 -12.41 16 14 C 0.65 11.06 8.75 54.05 0.47 11.54 16 15 O -0.58 -11.01 16.13 -19.28 -0.31 -11.32 16 16 O -0.37 -5.45 10.25 -40.32 -0.41 -5.86 16 17 C 0.13 1.53 5.60 36.01 0.20 1.73 16 18 C -0.10 -1.02 5.52 -104.62 -0.58 -1.60 16 19 C -0.09 -0.89 9.70 -39.58 -0.38 -1.28 16 20 C -0.12 -1.03 10.05 -39.58 -0.40 -1.43 16 21 C -0.11 -0.87 10.05 -39.58 -0.40 -1.27 16 22 C -0.12 -1.03 10.05 -39.58 -0.40 -1.43 16 23 C -0.09 -0.89 9.70 -39.58 -0.38 -1.28 16 24 H 0.27 6.83 8.31 -40.82 -0.34 6.49 16 25 H 0.40 9.28 7.90 -40.82 -0.32 8.95 16 26 H 0.09 1.50 8.14 -51.93 -0.42 1.08 16 27 H 0.09 1.50 8.14 -51.93 -0.42 1.08 16 28 H 0.42 7.40 7.55 -40.82 -0.31 7.10 16 29 H 0.08 0.89 8.08 -51.93 -0.42 0.47 16 30 H 0.08 0.89 8.08 -51.93 -0.42 0.47 16 31 H 0.13 1.05 8.06 -52.48 -0.42 0.63 16 32 H 0.12 0.76 8.06 -52.49 -0.42 0.34 16 33 H 0.12 0.68 8.06 -52.49 -0.42 0.25 16 34 H 0.12 0.76 8.06 -52.49 -0.42 0.34 16 35 H 0.13 1.05 8.06 -52.49 -0.42 0.63 16 LS Contribution 318.61 15.07 4.80 4.80 Total: -1.00 -31.36 318.61 -6.73 -38.09 By element: Atomic # 1 Polarization: 17.69 SS G_CDS: -3.94 Total: 13.75 kcal Atomic # 6 Polarization: 11.36 SS G_CDS: -2.22 Total: 9.13 kcal Atomic # 7 Polarization: -49.11 SS G_CDS: 0.30 Total: -48.81 kcal Atomic # 8 Polarization: -31.71 SS G_CDS: -0.64 Total: -32.35 kcal Atomic # 14 Polarization: 20.40 SS G_CDS: -5.02 Total: 15.38 kcal Total LS contribution 4.80 Total: 4.80 kcal Total: -31.36 -6.73 -38.09 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000013676533.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -56.767 kcal (2) G-P(sol) polarization free energy of solvation -31.364 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -88.132 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.727 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.091 kcal (6) G-S(sol) free energy of system = (1) + (5) -94.858 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds