Wall clock time and date at job start Mon Mar 30 2020 23:48:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31408 * 1 3 3 Si 1.86803 * 119.99954 * 2 1 4 4 H 1.48500 * 109.47113 * 179.97438 * 3 2 1 5 5 H 1.48499 * 109.47080 * 300.00170 * 3 2 1 6 6 H 1.48502 * 109.46876 * 60.00073 * 3 2 1 7 7 C 1.38947 * 120.00029 * 180.02562 * 2 1 3 8 8 H 1.08005 * 120.00099 * 179.97438 * 7 2 1 9 9 N 1.37091 * 120.00053 * 0.02562 * 7 2 1 10 10 C 1.34781 * 120.00352 * 180.02562 * 9 7 2 11 11 O 1.21299 * 119.99554 * 359.97438 * 10 9 7 12 12 C 1.50694 * 120.00527 * 179.97438 * 10 9 7 13 13 N 1.46493 * 109.47566 * 179.97438 * 12 10 9 14 14 C 1.34772 * 120.00563 * 180.02562 * 13 12 10 15 15 O 1.21516 * 119.99634 * 359.97438 * 14 13 12 16 16 O 1.34639 * 120.00599 * 180.02562 * 14 13 12 17 17 C 1.45190 * 117.00170 * 179.97438 * 16 14 13 18 18 C 1.50707 * 109.47131 * 179.97438 * 17 16 14 19 19 C 1.38238 * 119.99792 * 90.00017 * 18 17 16 20 20 C 1.38235 * 119.99712 * 179.97438 * 19 18 17 21 21 C 1.38234 * 120.00220 * 359.97124 * 20 19 18 22 22 C 1.38233 * 120.00037 * 0.28719 * 21 20 19 23 23 C 1.38234 * 120.00179 * 269.97954 * 18 17 16 24 24 H 0.97004 * 120.00410 * 0.02562 * 1 2 3 25 25 H 0.97004 * 120.00086 * 359.97438 * 9 7 2 26 26 H 1.09003 * 109.47069 * 59.99476 * 12 10 9 27 27 H 1.09000 * 109.47229 * 300.00004 * 12 10 9 28 28 H 0.97006 * 119.99893 * 359.97438 * 13 12 10 29 29 H 1.09005 * 109.47695 * 59.99979 * 17 16 14 30 30 H 1.09000 * 109.47342 * 299.99215 * 17 16 14 31 31 H 1.08005 * 120.00068 * 359.97438 * 19 18 17 32 32 H 1.07999 * 119.99770 * 179.97438 * 20 19 18 33 33 H 1.08002 * 119.99744 * 180.02562 * 21 20 19 34 34 H 1.07998 * 120.00395 * 179.72811 * 22 21 20 35 35 H 1.07999 * 119.99968 * 359.97438 * 23 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3141 0.0000 0.0000 3 14 2.2481 1.6178 0.0000 4 1 3.7081 1.3464 0.0006 5 1 1.8893 2.3965 -1.2125 6 1 1.8893 2.3964 1.2125 7 6 2.0088 -1.2033 -0.0005 8 1 3.0889 -1.2033 -0.0010 9 7 1.3234 -2.3906 -0.0016 10 6 1.9972 -3.5578 -0.0016 11 8 3.2102 -3.5578 -0.0011 12 6 1.2438 -4.8629 -0.0022 13 7 2.1957 -5.9764 -0.0027 14 6 1.7466 -7.2471 -0.0038 15 8 0.5519 -7.4691 -0.0039 16 8 2.6215 -8.2705 -0.0037 17 6 2.0665 -9.6121 -0.0043 18 6 3.1875 -10.6195 -0.0048 19 6 3.7016 -11.0820 1.1922 20 6 4.7294 -12.0063 1.1917 21 6 5.2428 -12.4686 -0.0056 22 6 4.7323 -12.0021 -1.2025 23 6 3.7013 -11.0812 -1.2021 24 1 -0.4851 0.8400 -0.0004 25 1 0.3533 -2.3906 -0.0016 26 1 0.6174 -4.9204 -0.8924 27 1 0.6168 -4.9209 0.8875 28 1 3.1495 -5.7992 -0.0030 29 1 1.4531 -9.7513 -0.8946 30 1 1.4526 -9.7518 0.8854 31 1 3.3001 -10.7211 2.1277 32 1 5.1313 -12.3674 2.1269 33 1 6.0455 -13.1911 -0.0059 34 1 5.1364 -12.3599 -2.1380 35 1 3.2992 -10.7204 -2.1373 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000013676533.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 23:48:33 Heat of formation + Delta-G solvation = -116.402687 kcal Electronic energy + Delta-G solvation = -19905.998499 eV Core-core repulsion = 16482.073552 eV Total energy + Delta-G solvation = -3423.924946 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 278.110 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -41.67729 -40.36841 -39.96023 -37.72264 -36.28526 -35.47085 -33.40368 -33.10105 -31.84139 -29.58314 -27.47561 -26.32416 -23.53089 -22.78327 -22.15532 -21.44187 -20.29837 -19.80447 -18.27565 -17.79170 -17.61590 -17.22133 -16.74109 -16.39740 -16.16077 -16.00065 -15.80495 -15.35939 -14.74111 -14.46174 -14.24241 -14.05898 -13.86207 -13.55522 -13.52688 -13.30939 -12.91776 -12.44684 -12.13557 -12.10194 -12.07493 -11.81758 -11.69479 -11.58699 -10.59476 -10.38737 -10.09942 -9.86253 -9.86049 -8.51529 -6.01558 0.11772 0.46336 1.17873 1.35139 1.44296 1.58203 1.63593 1.89371 2.28021 2.77172 3.04009 3.15674 3.27273 3.72965 3.80952 4.08674 4.17765 4.23276 4.25845 4.30245 4.38609 4.38830 4.59305 4.70063 4.99566 5.00620 5.11661 5.26625 5.38915 5.51174 5.57291 5.58522 5.91060 6.04445 6.28743 6.47548 7.03224 7.16667 7.42864 7.93240 8.65466 Molecular weight = 278.11amu Principal moments of inertia in cm(-1) A = 0.042943 B = 0.002576 C = 0.002497 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 651.874387 B =10867.599390 C =11209.683657 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.915 5.915 2 C -0.010 4.010 3 Si 0.997 3.003 4 H -0.271 1.271 5 H -0.271 1.271 6 H -0.271 1.271 7 C -0.336 4.336 8 H 0.086 0.914 9 N -0.556 5.556 10 C 0.432 3.568 11 O -0.624 6.624 12 C 0.140 3.860 13 N -0.688 5.688 14 C 0.654 3.346 15 O -0.600 6.600 16 O -0.367 6.367 17 C 0.126 3.874 18 C -0.117 4.117 19 C -0.107 4.107 20 C -0.130 4.130 21 C -0.111 4.111 22 C -0.130 4.130 23 C -0.107 4.107 24 H 0.280 0.720 25 H 0.401 0.599 26 H 0.104 0.896 27 H 0.104 0.896 28 H 0.417 0.583 29 H 0.083 0.917 30 H 0.083 0.917 31 H 0.131 0.869 32 H 0.146 0.854 33 H 0.149 0.851 34 H 0.146 0.854 35 H 0.131 0.869 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.405 -22.270 -0.015 22.916 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.555 5.555 2 C -0.211 4.211 3 Si 0.820 3.180 4 H -0.195 1.195 5 H -0.196 1.196 6 H -0.196 1.196 7 C -0.465 4.465 8 H 0.104 0.896 9 N -0.192 5.192 10 C 0.219 3.781 11 O -0.512 6.512 12 C 0.013 3.987 13 N -0.350 5.350 14 C 0.406 3.594 15 O -0.492 6.492 16 O -0.281 6.281 17 C 0.052 3.948 18 C -0.117 4.117 19 C -0.125 4.125 20 C -0.148 4.148 21 C -0.129 4.129 22 C -0.148 4.148 23 C -0.125 4.125 24 H 0.090 0.910 25 H 0.235 0.765 26 H 0.122 0.878 27 H 0.122 0.878 28 H 0.255 0.745 29 H 0.102 0.898 30 H 0.102 0.898 31 H 0.149 0.851 32 H 0.164 0.836 33 H 0.167 0.833 34 H 0.164 0.836 35 H 0.149 0.851 Dipole moment (debyes) X Y Z Total from point charges 5.472 -22.277 -0.014 22.940 hybrid contribution -0.068 1.032 -0.001 1.034 sum 5.404 -21.246 -0.015 21.922 Atomic orbital electron populations 1.69677 1.06951 1.29622 1.49204 1.26116 0.96546 1.02638 0.95758 0.84816 0.78117 0.76757 0.78321 1.19512 1.19611 1.19622 1.19761 0.92962 0.83469 1.50341 0.89615 1.41804 1.09673 1.04451 1.63280 1.20316 0.88071 0.85837 0.83837 1.90501 1.15261 1.87467 1.58001 1.20805 0.90479 0.82172 1.05228 1.44286 1.12180 1.01644 1.76844 1.17933 0.83284 0.81941 0.76194 1.90965 1.15687 1.84996 1.57511 1.86329 1.39119 1.15818 1.86796 1.21907 0.94028 0.74846 1.04032 1.19594 0.99075 0.98153 0.94873 1.21340 0.96563 0.97012 0.97559 1.21488 0.96414 0.97221 0.99659 1.21630 0.99672 0.99407 0.92207 1.21489 0.96392 0.97237 0.99664 1.21338 0.96538 0.97043 0.97553 0.91021 0.76495 0.87824 0.87813 0.74461 0.89826 0.89821 0.85105 0.83587 0.83296 0.83586 0.85106 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -47.97 13.05 21.66 0.28 -47.69 16 2 C -0.01 -0.50 5.50 84.93 0.47 -0.04 16 3 Si 1.00 41.47 29.55 68.60 2.03 43.49 16 4 H -0.27 -11.33 7.11 99.48 0.71 -10.62 16 5 H -0.27 -10.83 7.11 99.48 0.71 -10.12 16 6 H -0.27 -10.83 7.11 99.48 0.71 -10.13 16 7 C -0.34 -18.35 9.68 84.04 0.81 -17.54 16 8 H 0.09 4.96 7.16 -2.91 -0.02 4.94 16 9 N -0.56 -27.50 5.29 -306.98 -1.62 -29.12 16 10 C 0.43 19.74 7.85 87.65 0.69 20.43 16 11 O -0.62 -32.43 15.24 -3.09 -0.05 -32.48 16 12 C 0.14 4.99 6.15 85.63 0.53 5.52 16 13 N -0.69 -23.76 5.53 -594.63 -3.29 -27.05 16 14 C 0.65 21.90 8.75 129.79 1.14 23.04 16 15 O -0.60 -22.23 16.13 19.79 0.32 -21.91 16 16 O -0.37 -10.79 10.25 -55.49 -0.57 -11.36 16 17 C 0.13 2.94 5.60 71.24 0.40 3.34 16 18 C -0.12 -2.41 5.52 -19.86 -0.11 -2.52 16 19 C -0.11 -1.95 9.70 22.27 0.22 -1.73 16 20 C -0.13 -1.90 10.05 22.27 0.22 -1.68 16 21 C -0.11 -1.48 10.05 22.27 0.22 -1.25 16 22 C -0.13 -1.91 10.05 22.27 0.22 -1.68 16 23 C -0.11 -1.95 9.70 22.27 0.22 -1.73 16 24 H 0.28 13.71 8.31 -92.71 -0.77 12.94 16 25 H 0.40 18.83 7.90 -92.71 -0.73 18.09 16 26 H 0.10 3.42 8.14 -2.39 -0.02 3.40 16 27 H 0.10 3.43 8.14 -2.39 -0.02 3.41 16 28 H 0.42 14.72 7.55 -92.70 -0.70 14.02 16 29 H 0.08 1.86 8.08 -2.38 -0.02 1.84 16 30 H 0.08 1.86 8.08 -2.39 -0.02 1.84 16 31 H 0.13 2.11 8.06 -2.91 -0.02 2.09 16 32 H 0.15 1.42 8.06 -2.91 -0.02 1.40 16 33 H 0.15 1.14 8.06 -2.91 -0.02 1.12 16 34 H 0.15 1.42 8.06 -2.91 -0.02 1.40 16 35 H 0.13 2.11 8.06 -2.91 -0.02 2.09 16 Total: -1.00 -66.09 318.61 1.83 -64.26 By element: Atomic # 1 Polarization: 38.00 SS G_CDS: -0.30 Total: 37.71 kcal Atomic # 6 Polarization: 19.13 SS G_CDS: 5.02 Total: 24.16 kcal Atomic # 7 Polarization: -99.23 SS G_CDS: -4.63 Total: -103.86 kcal Atomic # 8 Polarization: -65.46 SS G_CDS: -0.30 Total: -65.75 kcal Atomic # 14 Polarization: 41.47 SS G_CDS: 2.03 Total: 43.49 kcal Total: -66.09 1.83 -64.26 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000013676533.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -52.144 kcal (2) G-P(sol) polarization free energy of solvation -66.087 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -118.231 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.828 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.259 kcal (6) G-S(sol) free energy of system = (1) + (5) -116.403 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds