Wall clock time and date at job start Tue Mar 31 2020 00:53:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 C 1.37979 * 119.93190 * 2 1 4 4 C 1.39556 * 119.85695 * 180.29832 * 3 2 1 5 5 C 1.47844 * 120.14585 * 179.70007 * 4 3 2 6 6 O 1.21553 * 120.00003 * 21.91257 * 5 4 3 7 7 N 1.34770 * 120.00037 * 201.91674 * 5 4 3 8 8 C 1.46500 * 120.00155 * 4.51479 * 7 5 4 9 9 C 1.46509 * 120.00337 * 184.51399 * 7 5 4 10 10 C 1.50702 * 109.46816 * 270.00116 * 9 7 5 11 11 H 1.07998 * 120.00269 * 359.97438 * 10 9 7 12 12 C 1.37877 * 119.99182 * 180.02562 * 10 9 7 13 13 N 1.31513 * 120.00619 * 359.97438 * 12 10 9 14 14 Si 1.86798 * 119.99637 * 179.97438 * 12 10 9 15 15 H 1.48500 * 109.47351 * 359.97438 * 14 12 10 16 16 H 1.48504 * 109.47210 * 119.99679 * 14 12 10 17 17 H 1.48494 * 109.47356 * 239.99792 * 14 12 10 18 18 C 1.39593 * 119.71120 * 359.42145 * 4 3 2 19 19 C 1.37939 * 119.85115 * 0.27755 * 18 4 3 20 20 C 1.38338 * 119.92784 * 179.69981 * 2 1 3 21 21 N 1.48012 * 119.85154 * 359.97438 * 20 2 1 22 22 O 1.21808 * 119.99794 * 173.04821 * 21 20 2 23 23 O 1.21796 * 120.00309 * 353.04424 * 21 20 2 24 24 H 1.09001 * 109.46967 * 263.18838 * 1 2 3 25 25 H 1.08999 * 109.47017 * 23.18698 * 1 2 3 26 26 H 1.08997 * 109.46926 * 143.18890 * 1 2 3 27 27 H 1.08004 * 120.06979 * 0.02562 * 3 2 1 28 28 H 1.09001 * 109.47581 * 264.30539 * 8 7 5 29 29 H 1.09008 * 109.47043 * 24.30210 * 8 7 5 30 30 H 1.09000 * 109.47719 * 144.29979 * 8 7 5 31 31 H 1.08998 * 109.46926 * 149.99648 * 9 7 5 32 32 H 1.08997 * 109.46269 * 29.99862 * 9 7 5 33 33 H 0.96994 * 120.00382 * 180.02562 * 13 12 10 34 34 H 1.07990 * 120.07396 * 180.29567 * 18 4 3 35 35 H 1.08003 * 119.92972 * 180.02562 * 19 18 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1955 1.1957 0.0000 4 6 3.5910 1.1939 -0.0063 5 6 4.3351 2.4714 -0.0130 6 8 3.7989 3.4892 0.3796 7 7 5.6079 2.5076 -0.4545 8 6 6.2217 1.3034 -1.0196 9 6 6.3779 3.7511 -0.3694 10 6 6.1830 4.5500 -1.6324 11 1 5.5495 4.1693 -2.4198 12 6 6.8145 5.7663 -1.7828 13 7 7.5864 6.2297 -0.8242 14 14 6.5737 6.7563 -3.3485 15 1 5.6657 6.0204 -4.2647 16 1 5.9778 8.0747 -3.0139 17 1 7.8864 6.9604 -4.0120 18 6 4.2813 -0.0193 -0.0003 19 6 3.5810 -1.2077 0.0060 20 6 2.1972 -1.1989 0.0063 21 7 1.4522 -2.4778 0.0136 22 8 2.0504 -3.5318 -0.1086 23 8 0.2410 -2.4764 0.1418 24 1 -0.3633 -0.1219 1.0204 25 1 -0.3633 0.9446 -0.4046 26 1 -0.3633 -0.8227 -0.6157 27 1 1.6555 2.1311 0.0004 28 1 6.7907 0.7881 -0.2457 29 1 5.4425 0.6420 -1.3987 30 1 6.8886 1.5837 -1.8350 31 1 7.4352 3.5161 -0.2475 32 1 6.0341 4.3333 0.4855 33 1 8.0304 7.0855 -0.9299 34 1 5.3612 -0.0276 -0.0003 35 1 4.1138 -2.1472 0.0110 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000019833774.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:53:03 Heat of formation + Delta-G solvation = 12.785754 kcal Electronic energy + Delta-G solvation = -21109.212289 eV Core-core repulsion = 17690.889374 eV Total energy + Delta-G solvation = -3418.322915 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 278.110 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -42.38965 -40.42846 -38.40083 -36.80001 -35.39852 -33.56031 -32.57831 -32.02234 -28.48806 -28.05216 -26.46028 -25.97894 -23.66014 -22.55446 -22.19969 -19.42009 -19.21231 -18.78232 -17.73005 -16.80057 -16.67501 -16.21825 -15.25254 -15.01558 -14.74682 -14.69160 -13.99259 -13.89055 -13.69170 -12.98098 -12.83168 -12.68857 -12.56713 -12.22900 -12.05124 -11.54991 -11.43337 -11.26741 -11.15407 -11.01010 -10.79447 -10.72547 -10.30041 -9.82698 -9.66693 -9.39587 -9.23912 -8.56579 -7.94989 -6.17640 -4.23179 -0.41724 0.73990 1.06718 1.26789 2.72427 3.21952 3.29651 3.32005 3.43485 3.65036 4.12863 4.14794 4.32959 4.49723 4.62697 4.70489 4.92815 5.14822 5.17739 5.30977 5.35975 5.41001 5.52124 5.55785 5.71094 5.80337 5.86847 5.97438 6.03935 6.38347 6.79715 7.18998 7.27201 7.53524 7.77278 8.03953 8.06492 8.60047 8.82195 9.42512 10.90650 Molecular weight = 278.11amu Principal moments of inertia in cm(-1) A = 0.033224 B = 0.003822 C = 0.003666 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 842.562224 B = 7324.055229 C = 7636.522606 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.131 4.131 2 C -0.023 4.023 3 C -0.073 4.073 4 C -0.058 4.058 5 C 0.537 3.463 6 O -0.521 6.521 7 N -0.586 5.586 8 C 0.060 3.940 9 C 0.244 3.756 10 C -0.531 4.531 11 H 0.059 0.941 12 C 0.063 3.937 13 N -0.893 5.893 14 Si 0.900 3.100 15 H -0.273 1.273 16 H -0.282 1.282 17 H -0.282 1.282 18 C -0.121 4.121 19 C -0.060 4.060 20 C -0.042 4.042 21 N 0.033 4.967 22 O -0.170 6.170 23 O -0.160 6.160 24 H 0.089 0.911 25 H 0.076 0.924 26 H 0.097 0.903 27 H 0.158 0.842 28 H 0.057 0.943 29 H 0.074 0.926 30 H 0.079 0.921 31 H 0.038 0.962 32 H 0.047 0.953 33 H 0.264 0.736 34 H 0.175 0.825 35 H 0.156 0.844 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.610 -14.798 1.175 16.682 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.187 4.187 2 C -0.025 4.025 3 C -0.092 4.092 4 C -0.062 4.062 5 C 0.322 3.678 6 O -0.399 6.399 7 N -0.317 5.317 8 C -0.083 4.083 9 C 0.126 3.874 10 C -0.569 4.569 11 H 0.077 0.923 12 C -0.140 4.140 13 N -0.532 5.532 14 Si 0.727 3.273 15 H -0.198 1.198 16 H -0.207 1.207 17 H -0.209 1.209 18 C -0.139 4.139 19 C -0.079 4.079 20 C -0.125 4.125 21 N 0.549 4.451 22 O -0.383 6.383 23 O -0.374 6.374 24 H 0.107 0.893 25 H 0.095 0.905 26 H 0.115 0.885 27 H 0.175 0.825 28 H 0.075 0.925 29 H 0.093 0.907 30 H 0.098 0.902 31 H 0.056 0.944 32 H 0.065 0.935 33 H 0.074 0.926 34 H 0.192 0.808 35 H 0.174 0.826 Dipole moment (debyes) X Y Z Total from point charges -7.373 -13.476 1.422 15.426 hybrid contribution -0.092 0.233 -0.888 0.922 sum -7.464 -13.243 0.534 15.211 Atomic orbital electron populations 1.21299 0.88229 1.04599 1.04568 1.19826 0.98214 0.90120 0.94291 1.21285 0.92854 0.97761 0.97298 1.20848 0.94548 0.95024 0.95801 1.18014 0.82357 0.87133 0.80282 1.90803 1.67250 1.34097 1.47727 1.48133 1.11953 1.13496 1.58113 1.22392 0.98859 0.88084 0.98984 1.19431 0.90335 0.79006 0.98649 1.21412 1.29229 1.04158 1.02129 0.92276 1.24932 0.94881 0.97218 0.96957 1.69926 1.30553 1.20149 1.32532 0.86413 0.77901 0.80092 0.82856 1.19784 1.20750 1.20852 1.22421 1.02956 0.89975 0.98567 1.21009 0.90697 1.00725 0.95488 1.21134 0.92483 0.83095 1.15817 1.43605 1.01105 1.02806 0.97541 1.94533 1.70438 1.19806 1.53549 1.94466 0.96451 1.93804 1.52724 0.89258 0.90531 0.88488 0.82483 0.92487 0.90729 0.90222 0.94389 0.93536 0.92584 0.80830 0.82607 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.25 8.65 36.01 0.31 -0.94 16 2 C -0.02 -0.27 5.87 -104.68 -0.61 -0.88 16 3 C -0.07 -0.95 9.21 -39.19 -0.36 -1.31 16 4 C -0.06 -0.84 5.57 -104.97 -0.58 -1.43 16 5 C 0.54 10.35 7.52 -12.33 -0.09 10.26 16 6 O -0.52 -12.26 16.18 5.32 0.09 -12.18 16 7 N -0.59 -11.35 2.86 -184.07 -0.53 -11.87 16 8 C 0.06 0.82 8.68 59.85 0.52 1.34 16 9 C 0.24 5.98 5.15 -5.19 -0.03 5.95 16 10 C -0.53 -14.35 9.39 -34.44 -0.32 -14.68 16 11 H 0.06 1.61 7.81 -52.49 -0.41 1.20 16 12 C 0.06 1.72 5.46 -17.82 -0.10 1.63 16 13 N -0.89 -25.53 13.29 55.43 0.74 -24.80 16 14 Si 0.90 21.13 29.54 -169.99 -5.02 16.11 16 15 H -0.27 -6.34 7.11 56.52 0.40 -5.94 16 16 H -0.28 -6.63 7.11 56.52 0.40 -6.23 16 17 H -0.28 -6.47 7.11 56.52 0.40 -6.07 16 18 C -0.12 -1.35 7.55 -39.19 -0.30 -1.64 16 19 C -0.06 -0.63 9.54 -39.64 -0.38 -1.01 16 20 C -0.04 -0.50 6.83 -79.86 -0.55 -1.05 16 21 N 0.03 0.44 4.45 34.01 0.15 0.59 16 22 O -0.17 -2.30 18.45 -29.46 -0.54 -2.84 16 23 O -0.16 -2.10 15.35 -29.46 -0.45 -2.55 16 24 H 0.09 0.79 8.14 -51.93 -0.42 0.37 16 25 H 0.08 0.62 8.03 -51.93 -0.42 0.20 16 26 H 0.10 0.96 5.89 -51.93 -0.31 0.65 16 27 H 0.16 2.02 7.80 -52.48 -0.41 1.62 16 28 H 0.06 0.61 7.21 -51.93 -0.37 0.24 16 29 H 0.07 0.84 4.92 -51.92 -0.26 0.58 16 30 H 0.08 1.13 8.11 -51.93 -0.42 0.71 16 31 H 0.04 0.93 8.07 -51.93 -0.42 0.51 16 32 H 0.05 1.29 7.49 -51.93 -0.39 0.90 16 33 H 0.26 7.13 8.31 -40.82 -0.34 6.79 16 34 H 0.17 1.61 4.17 -52.49 -0.22 1.40 16 35 H 0.16 1.29 7.62 -52.48 -0.40 0.89 16 LS Contribution 304.45 15.07 4.59 4.59 Total: -1.00 -31.86 304.45 -7.05 -38.91 By element: Atomic # 1 Polarization: 1.39 SS G_CDS: -3.58 Total: -2.19 kcal Atomic # 6 Polarization: -1.27 SS G_CDS: -2.49 Total: -3.76 kcal Atomic # 7 Polarization: -36.45 SS G_CDS: 0.36 Total: -36.08 kcal Atomic # 8 Polarization: -16.66 SS G_CDS: -0.91 Total: -17.57 kcal Atomic # 14 Polarization: 21.13 SS G_CDS: -5.02 Total: 16.11 kcal Total LS contribution 4.59 Total: 4.59 kcal Total: -31.86 -7.05 -38.91 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000019833774.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 51.698 kcal (2) G-P(sol) polarization free energy of solvation -31.865 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 19.834 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.048 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.912 kcal (6) G-S(sol) free energy of system = (1) + (5) 12.786 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds