Wall clock time and date at job start Tue Mar 31 2020 00:53:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 C 1.37979 * 119.93190 * 2 1 4 4 C 1.39556 * 119.85695 * 180.29832 * 3 2 1 5 5 C 1.47844 * 120.14585 * 179.70007 * 4 3 2 6 6 O 1.21553 * 120.00003 * 21.91257 * 5 4 3 7 7 N 1.34770 * 120.00037 * 201.91674 * 5 4 3 8 8 C 1.46500 * 120.00155 * 4.51479 * 7 5 4 9 9 C 1.46509 * 120.00337 * 184.51399 * 7 5 4 10 10 C 1.50702 * 109.46816 * 270.00116 * 9 7 5 11 11 H 1.07998 * 120.00269 * 359.97438 * 10 9 7 12 12 C 1.37877 * 119.99182 * 180.02562 * 10 9 7 13 13 N 1.31513 * 120.00619 * 359.97438 * 12 10 9 14 14 Si 1.86798 * 119.99637 * 179.97438 * 12 10 9 15 15 H 1.48500 * 109.47351 * 359.97438 * 14 12 10 16 16 H 1.48504 * 109.47210 * 119.99679 * 14 12 10 17 17 H 1.48494 * 109.47356 * 239.99792 * 14 12 10 18 18 C 1.39593 * 119.71120 * 359.42145 * 4 3 2 19 19 C 1.37939 * 119.85115 * 0.27755 * 18 4 3 20 20 C 1.38338 * 119.92784 * 179.69981 * 2 1 3 21 21 N 1.48012 * 119.85154 * 359.97438 * 20 2 1 22 22 O 1.21808 * 119.99794 * 173.04821 * 21 20 2 23 23 O 1.21796 * 120.00309 * 353.04424 * 21 20 2 24 24 H 1.09001 * 109.46967 * 263.18838 * 1 2 3 25 25 H 1.08999 * 109.47017 * 23.18698 * 1 2 3 26 26 H 1.08997 * 109.46926 * 143.18890 * 1 2 3 27 27 H 1.08004 * 120.06979 * 0.02562 * 3 2 1 28 28 H 1.09001 * 109.47581 * 264.30539 * 8 7 5 29 29 H 1.09008 * 109.47043 * 24.30210 * 8 7 5 30 30 H 1.09000 * 109.47719 * 144.29979 * 8 7 5 31 31 H 1.08998 * 109.46926 * 149.99648 * 9 7 5 32 32 H 1.08997 * 109.46269 * 29.99862 * 9 7 5 33 33 H 0.96994 * 120.00382 * 180.02562 * 13 12 10 34 34 H 1.07990 * 120.07396 * 180.29567 * 18 4 3 35 35 H 1.08003 * 119.92972 * 180.02562 * 19 18 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1955 1.1957 0.0000 4 6 3.5910 1.1939 -0.0063 5 6 4.3351 2.4714 -0.0130 6 8 3.7989 3.4892 0.3796 7 7 5.6079 2.5076 -0.4545 8 6 6.2217 1.3034 -1.0196 9 6 6.3779 3.7511 -0.3694 10 6 6.1830 4.5500 -1.6324 11 1 5.5495 4.1693 -2.4198 12 6 6.8145 5.7663 -1.7828 13 7 7.5864 6.2297 -0.8242 14 14 6.5737 6.7563 -3.3485 15 1 5.6657 6.0204 -4.2647 16 1 5.9778 8.0747 -3.0139 17 1 7.8864 6.9604 -4.0120 18 6 4.2813 -0.0193 -0.0003 19 6 3.5810 -1.2077 0.0060 20 6 2.1972 -1.1989 0.0063 21 7 1.4522 -2.4778 0.0136 22 8 2.0504 -3.5318 -0.1086 23 8 0.2410 -2.4764 0.1418 24 1 -0.3633 -0.1219 1.0204 25 1 -0.3633 0.9446 -0.4046 26 1 -0.3633 -0.8227 -0.6157 27 1 1.6555 2.1311 0.0004 28 1 6.7907 0.7881 -0.2457 29 1 5.4425 0.6420 -1.3987 30 1 6.8886 1.5837 -1.8350 31 1 7.4352 3.5161 -0.2475 32 1 6.0341 4.3333 0.4855 33 1 8.0304 7.0855 -0.9299 34 1 5.3612 -0.0276 -0.0003 35 1 4.1138 -2.1472 0.0110 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000019833774.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:53:02 Heat of formation + Delta-G solvation = -6.129962 kcal Electronic energy + Delta-G solvation = -21110.032536 eV Core-core repulsion = 17690.889374 eV Total energy + Delta-G solvation = -3419.143162 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 278.110 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -43.37705 -41.64538 -39.68475 -37.80109 -36.95726 -35.09361 -34.04259 -33.09833 -30.08246 -29.13684 -27.64504 -27.30708 -25.22490 -23.70839 -23.33559 -20.79263 -20.23256 -19.78675 -18.76601 -18.70610 -18.04058 -17.56227 -16.73641 -16.29852 -16.15783 -15.88476 -15.28477 -14.95707 -14.76653 -14.35951 -14.06577 -13.89216 -13.78922 -13.49381 -13.38637 -13.02648 -12.86479 -12.61603 -12.55360 -12.30456 -12.27039 -12.11701 -11.76187 -11.73341 -10.99795 -10.69192 -10.67346 -10.17062 -9.58388 -8.26415 -6.40585 -1.43783 -0.16868 0.02297 0.29181 1.35773 1.37993 1.48804 1.55452 2.02895 2.36138 2.38171 3.04390 3.22919 3.25398 3.30886 3.68983 3.72297 4.02330 4.22686 4.35409 4.49257 4.54382 4.56957 4.63707 4.83558 4.84219 4.91241 4.99096 5.00957 5.08963 5.17074 5.44282 5.47220 5.72902 5.99744 6.51188 6.51714 6.67894 7.11359 7.31681 8.81096 Molecular weight = 278.11amu Principal moments of inertia in cm(-1) A = 0.033224 B = 0.003822 C = 0.003666 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 842.562224 B = 7324.055229 C = 7636.522606 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.131 4.131 2 C -0.019 4.019 3 C -0.077 4.077 4 C -0.073 4.073 5 C 0.532 3.468 6 O -0.580 6.580 7 N -0.593 5.593 8 C 0.051 3.949 9 C 0.258 3.742 10 C -0.545 4.545 11 H 0.053 0.947 12 C 0.011 3.989 13 N -0.926 5.926 14 Si 0.965 3.035 15 H -0.269 1.269 16 H -0.282 1.282 17 H -0.269 1.269 18 C -0.106 4.106 19 C -0.045 4.045 20 C -0.047 4.047 21 N 0.033 4.967 22 O -0.177 6.177 23 O -0.163 6.163 24 H 0.098 0.902 25 H 0.089 0.911 26 H 0.096 0.904 27 H 0.151 0.849 28 H 0.095 0.905 29 H 0.104 0.896 30 H 0.073 0.927 31 H 0.036 0.964 32 H 0.003 0.997 33 H 0.268 0.732 34 H 0.198 0.802 35 H 0.187 0.813 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.710 -16.850 0.181 18.531 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.187 4.187 2 C -0.020 4.020 3 C -0.097 4.097 4 C -0.076 4.076 5 C 0.320 3.680 6 O -0.461 6.461 7 N -0.322 5.322 8 C -0.090 4.090 9 C 0.137 3.863 10 C -0.583 4.583 11 H 0.071 0.929 12 C -0.188 4.188 13 N -0.565 5.565 14 Si 0.790 3.210 15 H -0.193 1.193 16 H -0.208 1.208 17 H -0.194 1.194 18 C -0.124 4.124 19 C -0.063 4.063 20 C -0.130 4.130 21 N 0.547 4.453 22 O -0.389 6.389 23 O -0.377 6.377 24 H 0.116 0.884 25 H 0.107 0.893 26 H 0.115 0.885 27 H 0.169 0.831 28 H 0.113 0.887 29 H 0.122 0.878 30 H 0.092 0.908 31 H 0.054 0.946 32 H 0.021 0.979 33 H 0.077 0.923 34 H 0.215 0.785 35 H 0.204 0.796 Dipole moment (debyes) X Y Z Total from point charges -7.459 -15.592 0.411 17.289 hybrid contribution -0.098 0.798 -0.538 0.967 sum -7.557 -14.794 -0.127 16.613 Atomic orbital electron populations 1.21366 0.86854 1.05322 1.05160 1.19917 0.99191 0.89436 0.93492 1.21236 0.92512 0.98199 0.97726 1.20439 0.94704 0.93608 0.98880 1.18705 0.82134 0.88323 0.78852 1.90760 1.68487 1.36680 1.50155 1.48089 1.12098 1.13642 1.58380 1.22793 0.99887 0.86371 0.99944 1.18900 0.90505 0.80860 0.96062 1.21691 1.28949 1.04920 1.02764 0.92905 1.25793 0.94566 0.98312 1.00146 1.70030 1.31399 1.20699 1.34398 0.85399 0.78348 0.78202 0.79051 1.19294 1.20799 1.19408 1.22545 1.03894 0.88669 0.97297 1.21300 0.90052 1.01496 0.93485 1.21352 0.93199 0.82701 1.15770 1.43714 1.01135 1.02987 0.97422 1.94531 1.70401 1.20117 1.53810 1.94472 0.96643 1.93900 1.52734 0.88371 0.89264 0.88524 0.83147 0.88738 0.87793 0.90849 0.94627 0.97850 0.92296 0.78543 0.79626 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.27 8.65 71.24 0.62 -1.65 16 2 C -0.02 -0.40 5.87 -19.90 -0.12 -0.52 16 3 C -0.08 -1.96 9.21 22.53 0.21 -1.75 16 4 C -0.07 -2.01 5.57 -20.09 -0.11 -2.12 16 5 C 0.53 20.85 7.52 86.79 0.65 21.50 16 6 O -0.58 -28.65 16.18 -3.88 -0.06 -28.71 16 7 N -0.59 -23.00 2.86 -854.55 -2.44 -25.44 16 8 C 0.05 1.27 8.68 127.77 1.11 2.38 16 9 C 0.26 13.04 5.15 85.63 0.44 13.48 16 10 C -0.54 -30.11 9.39 25.60 0.24 -29.87 16 11 H 0.05 2.91 7.81 -2.91 -0.02 2.89 16 12 C 0.01 0.63 5.46 84.65 0.46 1.09 16 13 N -0.93 -54.00 13.29 21.45 0.28 -53.72 16 14 Si 0.97 43.55 29.54 68.60 2.03 45.58 16 15 H -0.27 -11.80 7.11 99.48 0.71 -11.09 16 16 H -0.28 -12.68 7.11 99.48 0.71 -11.98 16 17 H -0.27 -11.48 7.11 99.48 0.71 -10.78 16 18 C -0.11 -2.02 7.55 22.53 0.17 -1.85 16 19 C -0.04 -0.76 9.54 22.23 0.21 -0.55 16 20 C -0.05 -0.99 6.83 36.44 0.25 -0.74 16 21 N 0.03 0.76 4.45 -46.32 -0.21 0.55 16 22 O -0.18 -4.28 18.45 18.88 0.35 -3.93 16 23 O -0.16 -3.92 15.35 18.89 0.29 -3.63 16 24 H 0.10 1.55 8.14 -2.39 -0.02 1.53 16 25 H 0.09 1.31 8.03 -2.39 -0.02 1.29 16 26 H 0.10 1.72 5.89 -2.39 -0.01 1.71 16 27 H 0.15 3.96 7.80 -2.91 -0.02 3.94 16 28 H 0.09 1.68 7.21 -2.39 -0.02 1.66 16 29 H 0.10 1.99 4.92 -2.38 -0.01 1.98 16 30 H 0.07 1.96 8.11 -2.39 -0.02 1.94 16 31 H 0.04 1.79 8.07 -2.39 -0.02 1.77 16 32 H 0.00 0.20 7.49 -2.39 -0.02 0.18 16 33 H 0.27 14.65 8.31 -92.71 -0.77 13.88 16 34 H 0.20 2.81 4.17 -2.92 -0.01 2.79 16 35 H 0.19 2.13 7.62 -2.91 -0.02 2.11 16 Total: -1.00 -71.58 304.45 5.50 -66.07 By element: Atomic # 1 Polarization: 2.70 SS G_CDS: 1.13 Total: 3.83 kcal Atomic # 6 Polarization: -4.75 SS G_CDS: 4.13 Total: -0.62 kcal Atomic # 7 Polarization: -76.24 SS G_CDS: -2.36 Total: -78.61 kcal Atomic # 8 Polarization: -36.84 SS G_CDS: 0.58 Total: -36.26 kcal Atomic # 14 Polarization: 43.55 SS G_CDS: 2.03 Total: 45.58 kcal Total: -71.58 5.50 -66.07 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000019833774.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 59.945 kcal (2) G-P(sol) polarization free energy of solvation -71.578 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -11.633 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.503 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.075 kcal (6) G-S(sol) free energy of system = (1) + (5) -6.130 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds