Wall clock time and date at job start Tue Mar 31 2020 00:53:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50702 * 1 3 3 C 1.38382 * 119.85697 * 2 1 4 4 C 1.37934 * 120.14449 * 179.97438 * 3 2 1 5 5 C 1.39590 * 119.85608 * 359.97438 * 4 3 2 6 6 C 1.47843 * 120.14387 * 180.02562 * 5 4 3 7 7 O 1.21552 * 119.99911 * 200.90189 * 6 5 4 8 8 N 1.34771 * 120.00087 * 20.90796 * 6 5 4 9 9 C 1.46496 * 120.00152 * 6.22048 * 8 6 5 10 10 C 1.46502 * 120.00168 * 186.22329 * 8 6 5 11 11 C 1.50698 * 109.47374 * 269.99913 * 10 8 6 12 12 H 1.08000 * 119.99673 * 359.97438 * 11 10 8 13 13 C 1.37873 * 120.00096 * 180.02562 * 11 10 8 14 14 N 1.31512 * 119.99862 * 180.02562 * 13 11 10 15 15 Si 1.86801 * 120.00060 * 359.97438 * 13 11 10 16 16 H 1.48504 * 109.46884 * 90.00330 * 15 13 11 17 17 H 1.48492 * 109.47433 * 210.00144 * 15 13 11 18 18 H 1.48493 * 109.47450 * 330.00674 * 15 13 11 19 19 C 1.39564 * 119.71050 * 0.28404 * 5 4 3 20 20 C 1.37975 * 119.85097 * 359.46446 * 19 5 4 21 21 N 1.48015 * 119.92951 * 180.25713 * 20 19 5 22 22 O 1.21799 * 119.99776 * 6.72713 * 21 20 19 23 23 O 1.21795 * 120.00084 * 186.72299 * 21 20 19 24 24 H 1.09003 * 109.46979 * 97.07162 * 1 2 3 25 25 H 1.08995 * 109.47639 * 217.07092 * 1 2 3 26 26 H 1.08998 * 109.46835 * 337.07509 * 1 2 3 27 27 H 1.07994 * 119.92219 * 359.96944 * 3 2 1 28 28 H 1.08001 * 120.07027 * 179.97438 * 4 3 2 29 29 H 1.08998 * 109.47176 * 264.15646 * 9 8 6 30 30 H 1.09003 * 109.47192 * 24.15201 * 9 8 6 31 31 H 1.09001 * 109.47274 * 144.15169 * 9 8 6 32 32 H 1.09004 * 109.47129 * 149.99643 * 10 8 6 33 33 H 1.08998 * 109.46877 * 29.99896 * 10 8 6 34 34 H 0.97008 * 119.99864 * 179.97438 * 14 13 11 35 35 H 1.07995 * 120.07085 * 179.70002 * 19 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1959 1.2002 0.0000 4 6 3.5753 1.2071 0.0005 5 6 4.2762 -0.0001 0.0016 6 6 5.7547 -0.0001 0.0028 7 8 6.3627 -0.9836 -0.3719 8 7 6.4282 1.0904 0.4193 9 6 5.7018 2.2233 0.9981 10 6 7.8869 1.1429 0.2933 11 6 8.5194 0.5856 1.5424 12 1 7.8972 0.2283 2.3495 13 6 9.8925 0.5326 1.6551 14 7 10.4445 0.0458 2.7449 15 14 10.9688 1.1512 0.2592 16 1 11.2567 2.5944 0.4583 17 1 12.2437 0.3900 0.2424 18 1 10.2618 0.9612 -1.0327 19 6 3.5754 -1.2069 -0.0039 20 6 2.1956 -1.1999 0.0009 21 7 1.4506 -2.4788 0.0009 22 8 2.0496 -3.5326 0.1202 23 8 0.2385 -2.4775 -0.1185 24 1 -0.3633 -0.1265 -1.0199 25 1 -0.3634 -0.8199 0.6194 26 1 -0.3633 0.9465 0.4003 27 1 1.6524 2.1333 -0.0005 28 1 4.1117 2.1444 0.0001 29 1 5.5168 2.9693 0.2253 30 1 4.7512 1.8766 1.4033 31 1 6.2969 2.6669 1.7964 32 1 8.2027 2.1772 0.1564 33 1 8.1987 0.5509 -0.5671 34 1 11.4106 0.0082 2.8241 35 1 4.1118 -2.1442 -0.0079 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000019833777.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:53:14 Heat of formation + Delta-G solvation = 18.643915 kcal Electronic energy + Delta-G solvation = -21215.391671 eV Core-core repulsion = 17797.322785 eV Total energy + Delta-G solvation = -3418.068886 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 278.110 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -42.33943 -40.44687 -38.50006 -36.71314 -35.44871 -33.53608 -32.55890 -32.06054 -29.01030 -28.22251 -26.41302 -26.11338 -23.36264 -22.72860 -21.95919 -20.03669 -18.76175 -18.46050 -17.67007 -17.08494 -16.45026 -16.31772 -15.80392 -15.31751 -14.73761 -14.49446 -14.19141 -13.93556 -13.35831 -13.25081 -12.97768 -12.70438 -12.52929 -12.38885 -11.98773 -11.84044 -11.45194 -11.38060 -11.16738 -11.06139 -10.76882 -10.65469 -10.22521 -9.79398 -9.67545 -9.45409 -9.25274 -8.68276 -7.98091 -6.17052 -4.17408 -0.27584 0.47995 1.19244 1.30217 2.69252 3.19569 3.26973 3.31366 3.37602 3.62161 4.09636 4.13411 4.31262 4.40487 4.54258 4.63404 4.87609 5.07480 5.15120 5.25058 5.26742 5.33054 5.44270 5.45488 5.65972 5.74124 5.79901 5.91712 5.98709 6.40088 6.47219 6.78124 7.05151 7.48045 7.60093 7.90970 8.33665 8.61525 8.85788 9.41488 10.96174 Molecular weight = 278.11amu Principal moments of inertia in cm(-1) A = 0.030474 B = 0.004171 C = 0.003860 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 918.586851 B = 6711.889063 C = 7252.542082 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 C -0.004 4.004 3 C -0.134 4.134 4 C -0.057 4.057 5 C -0.124 4.124 6 C 0.547 3.453 7 O -0.520 6.520 8 N -0.586 5.586 9 C 0.063 3.937 10 C 0.217 3.783 11 C -0.534 4.534 12 H 0.075 0.925 13 C 0.074 3.926 14 N -0.894 5.894 15 Si 0.875 3.125 16 H -0.275 1.275 17 H -0.282 1.282 18 H -0.264 1.264 19 C 0.003 3.997 20 C -0.059 4.059 21 N 0.034 4.966 22 O -0.161 6.161 23 O -0.163 6.163 24 H 0.089 0.911 25 H 0.099 0.901 26 H 0.074 0.926 27 H 0.151 0.849 28 H 0.171 0.829 29 H 0.057 0.943 30 H 0.074 0.926 31 H 0.081 0.919 32 H 0.031 0.969 33 H 0.043 0.957 34 H 0.266 0.734 35 H 0.164 0.836 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.965 6.978 -5.847 21.037 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.190 4.190 2 C -0.005 4.005 3 C -0.152 4.152 4 C -0.075 4.075 5 C -0.128 4.128 6 C 0.333 3.667 7 O -0.397 6.397 8 N -0.317 5.317 9 C -0.080 4.080 10 C 0.097 3.903 11 C -0.572 4.572 12 H 0.093 0.907 13 C -0.129 4.129 14 N -0.532 5.532 15 Si 0.702 3.298 16 H -0.200 1.200 17 H -0.208 1.208 18 H -0.189 1.189 19 C -0.017 4.017 20 C -0.142 4.142 21 N 0.551 4.449 22 O -0.376 6.376 23 O -0.376 6.376 24 H 0.108 0.892 25 H 0.117 0.883 26 H 0.093 0.907 27 H 0.169 0.831 28 H 0.188 0.812 29 H 0.075 0.925 30 H 0.092 0.908 31 H 0.100 0.900 32 H 0.049 0.951 33 H 0.061 0.939 34 H 0.076 0.924 35 H 0.182 0.818 Dipole moment (debyes) X Y Z Total from point charges -18.066 7.028 -5.953 20.278 hybrid contribution 0.572 -0.011 -0.470 0.741 sum -17.494 7.017 -6.423 19.913 Atomic orbital electron populations 1.21339 0.88436 1.04536 1.04645 1.20054 0.98093 0.90543 0.91843 1.21122 0.93887 0.97157 1.03053 1.22847 0.94605 0.99812 0.90190 1.20185 0.95354 0.92560 1.04735 1.17861 0.85374 0.83780 0.79661 1.90813 1.68953 1.32088 1.47857 1.47723 1.09336 1.15485 1.59170 1.22359 0.97738 0.89225 0.98670 1.19765 0.74257 0.97196 0.99109 1.21269 0.92196 1.42259 1.01483 0.90663 1.24854 0.97766 0.94645 0.95623 1.69890 1.11171 1.45244 1.26870 0.86864 0.80644 0.79078 0.83253 1.20019 1.20779 1.18866 1.21114 0.90557 1.00813 0.89214 1.20800 0.92134 0.83522 1.17777 1.43510 1.01007 1.02758 0.97599 1.94591 1.70405 1.19446 1.53179 1.94434 0.96368 1.93717 1.53097 0.89224 0.88304 0.90689 0.83124 0.81203 0.92534 0.90774 0.89987 0.95148 0.93888 0.92406 0.81826 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.03 8.66 36.01 0.31 -0.71 16 2 C 0.00 -0.04 5.89 -104.53 -0.62 -0.65 16 3 C -0.13 -1.10 9.65 -39.64 -0.38 -1.48 16 4 C -0.06 -0.58 7.58 -39.19 -0.30 -0.87 16 5 C -0.12 -1.82 5.57 -104.97 -0.58 -2.40 16 6 C 0.55 10.67 7.52 -12.33 -0.09 10.58 16 7 O -0.52 -12.50 16.18 5.32 0.09 -12.41 16 8 N -0.59 -11.13 2.86 -184.08 -0.53 -11.66 16 9 C 0.06 0.82 8.66 59.84 0.52 1.34 16 10 C 0.22 5.00 4.21 -5.19 -0.02 4.98 16 11 C -0.53 -14.85 9.94 -34.44 -0.34 -15.20 16 12 H 0.08 2.32 8.06 -52.49 -0.42 1.89 16 13 C 0.07 2.11 5.47 -17.82 -0.10 2.01 16 14 N -0.89 -27.07 13.96 55.43 0.77 -26.29 16 15 Si 0.88 20.79 27.47 -169.99 -4.67 16.12 16 16 H -0.27 -6.22 7.11 56.52 0.40 -5.82 16 17 H -0.28 -6.74 7.11 56.52 0.40 -6.34 16 18 H -0.26 -6.09 6.54 56.52 0.37 -5.72 16 19 C 0.00 0.04 9.10 -39.18 -0.36 -0.31 16 20 C -0.06 -0.78 6.82 -80.01 -0.55 -1.32 16 21 N 0.03 0.50 4.45 33.93 0.15 0.65 16 22 O -0.16 -2.61 18.46 -29.46 -0.54 -3.16 16 23 O -0.16 -2.22 15.34 -29.46 -0.45 -2.67 16 24 H 0.09 0.64 8.14 -51.93 -0.42 0.22 16 25 H 0.10 0.88 5.86 -51.93 -0.30 0.58 16 26 H 0.07 0.39 8.03 -51.93 -0.42 -0.03 16 27 H 0.15 0.69 8.05 -52.49 -0.42 0.26 16 28 H 0.17 1.36 4.12 -52.49 -0.22 1.15 16 29 H 0.06 0.53 7.16 -51.93 -0.37 0.16 16 30 H 0.07 0.80 5.01 -51.93 -0.26 0.53 16 31 H 0.08 1.13 8.11 -51.93 -0.42 0.71 16 32 H 0.03 0.64 7.50 -51.93 -0.39 0.25 16 33 H 0.04 1.07 6.57 -51.93 -0.34 0.73 16 34 H 0.27 7.51 8.31 -40.82 -0.34 7.17 16 35 H 0.16 2.63 7.35 -52.49 -0.39 2.25 16 LS Contribution 300.82 15.07 4.53 4.53 Total: -1.00 -34.24 300.82 -6.70 -40.94 By element: Atomic # 1 Polarization: 1.55 SS G_CDS: -3.54 Total: -2.00 kcal Atomic # 6 Polarization: -1.55 SS G_CDS: -2.51 Total: -4.05 kcal Atomic # 7 Polarization: -37.70 SS G_CDS: 0.40 Total: -37.30 kcal Atomic # 8 Polarization: -17.33 SS G_CDS: -0.91 Total: -18.24 kcal Atomic # 14 Polarization: 20.79 SS G_CDS: -4.67 Total: 16.12 kcal Total LS contribution 4.53 Total: 4.53 kcal Total: -34.24 -6.70 -40.94 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000019833777.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 59.582 kcal (2) G-P(sol) polarization free energy of solvation -34.243 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 25.339 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.695 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.938 kcal (6) G-S(sol) free energy of system = (1) + (5) 18.644 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds