Wall clock time and date at job start Tue Mar 31 2020 00:53:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50702 * 1 3 3 C 1.38382 * 119.85697 * 2 1 4 4 C 1.37934 * 120.14449 * 179.97438 * 3 2 1 5 5 C 1.39590 * 119.85608 * 359.97438 * 4 3 2 6 6 C 1.47843 * 120.14387 * 180.02562 * 5 4 3 7 7 O 1.21552 * 119.99911 * 200.90189 * 6 5 4 8 8 N 1.34771 * 120.00087 * 20.90796 * 6 5 4 9 9 C 1.46496 * 120.00152 * 6.22048 * 8 6 5 10 10 C 1.46502 * 120.00168 * 186.22329 * 8 6 5 11 11 C 1.50698 * 109.47374 * 269.99913 * 10 8 6 12 12 H 1.08000 * 119.99673 * 359.97438 * 11 10 8 13 13 C 1.37873 * 120.00096 * 180.02562 * 11 10 8 14 14 N 1.31512 * 119.99862 * 180.02562 * 13 11 10 15 15 Si 1.86801 * 120.00060 * 359.97438 * 13 11 10 16 16 H 1.48504 * 109.46884 * 90.00330 * 15 13 11 17 17 H 1.48492 * 109.47433 * 210.00144 * 15 13 11 18 18 H 1.48493 * 109.47450 * 330.00674 * 15 13 11 19 19 C 1.39564 * 119.71050 * 0.28404 * 5 4 3 20 20 C 1.37975 * 119.85097 * 359.46446 * 19 5 4 21 21 N 1.48015 * 119.92951 * 180.25713 * 20 19 5 22 22 O 1.21799 * 119.99776 * 6.72713 * 21 20 19 23 23 O 1.21795 * 120.00084 * 186.72299 * 21 20 19 24 24 H 1.09003 * 109.46979 * 97.07162 * 1 2 3 25 25 H 1.08995 * 109.47639 * 217.07092 * 1 2 3 26 26 H 1.08998 * 109.46835 * 337.07509 * 1 2 3 27 27 H 1.07994 * 119.92219 * 359.96944 * 3 2 1 28 28 H 1.08001 * 120.07027 * 179.97438 * 4 3 2 29 29 H 1.08998 * 109.47176 * 264.15646 * 9 8 6 30 30 H 1.09003 * 109.47192 * 24.15201 * 9 8 6 31 31 H 1.09001 * 109.47274 * 144.15169 * 9 8 6 32 32 H 1.09004 * 109.47129 * 149.99643 * 10 8 6 33 33 H 1.08998 * 109.46877 * 29.99896 * 10 8 6 34 34 H 0.97008 * 119.99864 * 179.97438 * 14 13 11 35 35 H 1.07995 * 120.07085 * 179.70002 * 19 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1959 1.2002 0.0000 4 6 3.5753 1.2071 0.0005 5 6 4.2762 -0.0001 0.0016 6 6 5.7547 -0.0001 0.0028 7 8 6.3627 -0.9836 -0.3719 8 7 6.4282 1.0904 0.4193 9 6 5.7018 2.2233 0.9981 10 6 7.8869 1.1429 0.2933 11 6 8.5194 0.5856 1.5424 12 1 7.8972 0.2283 2.3495 13 6 9.8925 0.5326 1.6551 14 7 10.4445 0.0458 2.7449 15 14 10.9688 1.1512 0.2592 16 1 11.2567 2.5944 0.4583 17 1 12.2437 0.3900 0.2424 18 1 10.2618 0.9612 -1.0327 19 6 3.5754 -1.2069 -0.0039 20 6 2.1956 -1.1999 0.0009 21 7 1.4506 -2.4788 0.0009 22 8 2.0496 -3.5326 0.1202 23 8 0.2385 -2.4775 -0.1185 24 1 -0.3633 -0.1265 -1.0199 25 1 -0.3634 -0.8199 0.6194 26 1 -0.3633 0.9465 0.4003 27 1 1.6524 2.1333 -0.0005 28 1 4.1117 2.1444 0.0001 29 1 5.5168 2.9693 0.2253 30 1 4.7512 1.8766 1.4033 31 1 6.2969 2.6669 1.7964 32 1 8.2027 2.1772 0.1564 33 1 8.1987 0.5509 -0.5671 34 1 11.4106 0.0082 2.8241 35 1 4.1118 -2.1442 -0.0079 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000019833777.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:53:14 Heat of formation + Delta-G solvation = -4.915839 kcal Electronic energy + Delta-G solvation = -21216.413299 eV Core-core repulsion = 17797.322785 eV Total energy + Delta-G solvation = -3419.090514 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 278.110 amu Computer time = 1.02 seconds Orbital eigenvalues (eV) -43.44271 -41.65134 -39.73971 -37.84289 -36.99976 -35.02337 -34.09958 -33.10222 -30.65949 -29.22276 -27.68830 -27.27885 -24.85259 -23.73939 -23.21645 -21.34255 -19.90346 -19.70737 -19.19502 -18.78802 -17.70569 -17.50195 -16.96483 -16.73298 -16.04995 -15.94090 -15.33332 -14.90407 -14.81631 -14.42630 -14.17414 -13.85507 -13.79765 -13.60639 -13.31865 -13.01897 -12.95179 -12.57597 -12.50768 -12.41386 -12.26074 -12.03388 -11.80229 -11.71598 -11.04635 -10.84383 -10.63550 -10.24788 -9.55224 -8.36484 -6.43099 -1.29503 -0.53459 0.19273 0.26672 1.31283 1.37010 1.46839 1.55364 2.00920 2.29706 2.37391 2.97628 3.15594 3.24734 3.48839 3.64385 3.69074 3.95144 4.21758 4.34130 4.46708 4.52014 4.62760 4.71420 4.73925 4.85329 4.90315 4.90891 5.00756 5.03216 5.17146 5.40395 5.45863 5.50204 6.17248 6.45438 6.45896 6.58930 7.08293 7.23566 8.80801 Molecular weight = 278.11amu Principal moments of inertia in cm(-1) A = 0.030474 B = 0.004171 C = 0.003860 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 918.586851 B = 6711.889063 C = 7252.542082 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C 0.010 3.990 3 C -0.105 4.105 4 C -0.037 4.037 5 C -0.143 4.143 6 C 0.538 3.462 7 O -0.588 6.588 8 N -0.592 5.592 9 C 0.051 3.949 10 C 0.223 3.777 11 C -0.541 4.541 12 H 0.024 0.976 13 C 0.009 3.991 14 N -0.947 5.947 15 Si 0.952 3.048 16 H -0.245 1.245 17 H -0.285 1.285 18 H -0.253 1.253 19 C -0.018 4.018 20 C -0.074 4.074 21 N 0.034 4.966 22 O -0.243 6.243 23 O -0.113 6.113 24 H 0.102 0.898 25 H 0.084 0.916 26 H 0.116 0.884 27 H 0.212 0.788 28 H 0.203 0.797 29 H 0.110 0.890 30 H 0.099 0.901 31 H 0.072 0.928 32 H 0.065 0.935 33 H 0.021 0.979 34 H 0.269 0.731 35 H 0.127 0.873 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.893 11.764 -7.366 25.922 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.191 4.191 2 C 0.008 3.992 3 C -0.123 4.123 4 C -0.055 4.055 5 C -0.147 4.147 6 C 0.326 3.674 7 O -0.470 6.470 8 N -0.322 5.322 9 C -0.090 4.090 10 C 0.101 3.899 11 C -0.580 4.580 12 H 0.042 0.958 13 C -0.189 4.189 14 N -0.587 5.587 15 Si 0.774 3.226 16 H -0.169 1.169 17 H -0.211 1.211 18 H -0.177 1.177 19 C -0.039 4.039 20 C -0.157 4.157 21 N 0.547 4.453 22 O -0.438 6.438 23 O -0.343 6.343 24 H 0.121 0.879 25 H 0.103 0.897 26 H 0.134 0.866 27 H 0.229 0.771 28 H 0.219 0.781 29 H 0.128 0.872 30 H 0.117 0.883 31 H 0.090 0.910 32 H 0.083 0.917 33 H 0.039 0.961 34 H 0.078 0.922 35 H 0.145 0.855 Dipole moment (debyes) X Y Z Total from point charges -20.896 11.754 -7.433 25.101 hybrid contribution 1.208 -1.407 0.073 1.856 sum -19.688 10.347 -7.359 23.428 Atomic orbital electron populations 1.21484 0.85993 1.06321 1.05284 1.20631 0.99760 0.89548 0.89221 1.21765 0.92757 0.98360 0.99393 1.23172 0.95698 0.98640 0.87982 1.19749 0.92259 0.94421 1.08256 1.18658 0.87587 0.82799 0.78313 1.90762 1.70876 1.34500 1.50836 1.47792 1.08121 1.17179 1.59098 1.22838 0.97912 0.88186 1.00027 1.19456 0.76958 0.97937 0.95513 1.21541 0.92275 1.42083 1.02093 0.95752 1.25917 0.99503 0.94808 0.98629 1.70064 1.11729 1.47269 1.29603 0.85661 0.77783 0.79767 0.79430 1.16905 1.21123 1.17702 1.20858 0.91700 0.99932 0.91381 1.20924 0.91465 0.83760 1.19586 1.43756 1.01075 1.03197 0.97240 1.94623 1.70751 1.20618 1.57780 1.94374 0.96417 1.93781 1.49691 0.87948 0.89715 0.86571 0.77122 0.78083 0.87223 0.88251 0.90965 0.91743 0.96061 0.92222 0.85504 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.31 8.66 71.24 0.62 -0.69 16 2 C 0.01 0.16 5.89 -19.80 -0.12 0.04 16 3 C -0.11 -1.02 9.65 22.23 0.21 -0.80 16 4 C -0.04 -0.59 7.58 22.52 0.17 -0.42 16 5 C -0.14 -4.14 5.57 -20.09 -0.11 -4.25 16 6 C 0.54 21.79 7.52 86.79 0.65 22.44 16 7 O -0.59 -30.73 16.18 -3.88 -0.06 -30.79 16 8 N -0.59 -22.30 2.86 -854.59 -2.44 -24.74 16 9 C 0.05 1.14 8.66 127.77 1.11 2.25 16 10 C 0.22 10.33 4.21 85.63 0.36 10.69 16 11 C -0.54 -31.45 9.94 25.60 0.25 -31.19 16 12 H 0.02 1.60 8.06 -2.91 -0.02 1.58 16 13 C 0.01 0.55 5.47 84.65 0.46 1.01 16 14 N -0.95 -59.80 13.96 21.45 0.30 -59.50 16 15 Si 0.95 43.20 27.47 68.60 1.88 45.09 16 16 H -0.25 -9.96 7.11 99.48 0.71 -9.25 16 17 H -0.29 -13.03 7.11 99.48 0.71 -12.32 16 18 H -0.25 -10.96 6.54 99.48 0.65 -10.31 16 19 C -0.02 -0.58 9.10 22.53 0.20 -0.37 16 20 C -0.07 -1.91 6.82 36.34 0.25 -1.66 16 21 N 0.03 1.02 4.45 -46.55 -0.21 0.81 16 22 O -0.24 -8.76 18.46 18.89 0.35 -8.41 16 23 O -0.11 -2.92 15.34 18.89 0.29 -2.63 16 24 H 0.10 0.86 8.14 -2.39 -0.02 0.84 16 25 H 0.08 1.14 5.86 -2.39 -0.01 1.13 16 26 H 0.12 0.27 8.03 -2.39 -0.02 0.25 16 27 H 0.21 -0.26 8.05 -2.91 -0.02 -0.28 16 28 H 0.20 1.88 4.12 -2.91 -0.01 1.86 16 29 H 0.11 1.37 7.16 -2.39 -0.02 1.35 16 30 H 0.10 1.72 5.01 -2.39 -0.01 1.70 16 31 H 0.07 1.81 8.11 -2.39 -0.02 1.79 16 32 H 0.06 2.56 7.50 -2.38 -0.02 2.54 16 33 H 0.02 1.08 6.57 -2.39 -0.02 1.06 16 34 H 0.27 15.75 8.31 -92.70 -0.77 14.98 16 35 H 0.13 4.82 7.35 -2.91 -0.02 4.80 16 Total: -1.00 -86.65 300.82 5.25 -81.39 By element: Atomic # 1 Polarization: 0.65 SS G_CDS: 1.08 Total: 1.73 kcal Atomic # 6 Polarization: -7.00 SS G_CDS: 4.06 Total: -2.94 kcal Atomic # 7 Polarization: -81.08 SS G_CDS: -2.35 Total: -83.43 kcal Atomic # 8 Polarization: -42.41 SS G_CDS: 0.58 Total: -41.84 kcal Atomic # 14 Polarization: 43.20 SS G_CDS: 1.88 Total: 45.09 kcal Total: -86.65 5.25 -81.39 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000019833777.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 76.476 kcal (2) G-P(sol) polarization free energy of solvation -86.646 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -10.170 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.254 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -81.392 kcal (6) G-S(sol) free energy of system = (1) + (5) -4.916 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.02 seconds